ESM 4 List of markers polymorphic between donor and recipient parents
S. No. / SSR marker / Genomic position( Mb) / Taraori Basmatiand
Imp Samba Mahsuri / Basmati 386and
Imp Samba Mahsuri
Chromosome 1
1 / RM8068 / 2.02 / + / +
2 / RM10843 / 13.2 / + / +
3 / RM10852 / 13.9 / + / +
4 / RM10927 / 15.7 / + / +
5 / JGT 16.2 / 16.2 / + / +
6 / RM562 / 16.23 / + / +
7 / RN3475 / 26.03 / + / +
8 / RM6827 / 39.19 / + / +
Chromosome 2
9 / JGT 2.13 / 2.13 / + / +
10 / RM300 / 13.1 / + / +
11 / JGT22.7 / 22.7 / + / -
12 / RM14156 / 34.82 / + / +
Chromosome 3
13 / RM16090 / 7.0 / + / +
14 / RM5474 / 9.0 / + / +
15 / RM7 / 16.0 / + / +
16 / RM6283 / 16.9 / + / +
17 / RM251 / 19.0 / + / +
18 / RM85 / 44.7 / - / +
Chromosome 4
19 / RM261 / 6.4 / + / -
20 / RM16913 / 19.6 / + / +
21 / RM17093 / 22.99 / + / +
22 / RM349 / 32.4 / + / +
Chromosome 5
23 / RM437 / 3.8 / + / -
24 / JGT7.8 / 7.8 / + / +
25 / RM18614 / 19.07 / + / +
26 / RM7446 / 24.8 / - / +
Chromosome 6
27 / RM190 / 1.7 / + / +
28 / RM225 / 4.0 / + / +
29 / JGT5.4 / 5.4 / + / +
30 / JGT6.9 / 6.9 / + / -
31 / JGT7.5 / 7.5 / + / +
32 / JGT18.1 / 18.1 / + / +
33 / RM6926 / 28.2 / + / +
Chromosome 7
36 / RM6728 / 5.76 / + / +
34 / RM11 / 11.0 / + / +
35 / RM542 / 12.7 / + / +
37 / RM21692 / 25.5 / + / +
Chromosome 8
38 / RM8.12 / 8.12 / + / -
39 / RM8.24 / 8.24 / + / +
40 / RM8.27 / 8.27 / + / +
41 / RM8.4 / 8.4 / + / +
42 / RM8.5 / 8.5 / + / +
43 / RM8.8 / 8.8 / + / +
44 / RM8.9 / 8.9 / + / +
45 / RM4599 / 15.4 / - / +
46 / RM3409 / 15.4 / + / +
47 / RM339 / 18.1 / + / +
48 / RM3496 / 27.8 / + / +
Chromosome 9
49 / RM23819 / 5.01 / + / +
50 / RM5777 / 10.07 / - / +
51 / RM24540 / 18.1 / + / -
52 / RM24720 / 20.9 / + / +
Chromosome 10
53 / RM25110 / 5.75 / + / +
54 / RM3283 / 11.8 / + / +
56 / RM5147 / 14.0 / + / +
55 / RM309 / 21.5 / + / +
Chromosome 11
57 / RM26101 / 2.8 / + / +
58 / JGT15.3 / 15.3 / + / +
59 / RM26703 / 16.4 / + / +
60 / RM144 / 22.8 / + / +
61 / RM4069A / 25.8 / + / -
Chromosome 12
62 / RM1080 / 0.8 / + / +
63 / RM1337 / 12.0 / + / +
64 / RM3331 / 23.5 / + / +
65 / RM1226 / 28.2 / + / +
“+” denotes polymorphic while “ –” denotes monomorphic