with pure
culture
Acetobacterium / KO 460 / S-G-Aceto-0826-a-A-21 / ACTGAGTCTCCCCAACACCTA / Members of target genus / 826 / 21 / 60.4 / nt
Acetobacterium / KO 461 / S-G-Aceto-1147-a-A-19 / TCCACGGCAGTCTGCTTAG / Members of target genus, uncultured / 1147 / 19 / 61 / nt
Acetobacterium / KO 462 / S-G-Aceto-1240-a-A-18 / CGCAGCCCTCTGTTCAGA / Members of target genus, uncultured / 1240 / 18 / 61.2 / nt
Acidobacterium / KO 463 / S-G-Acido-1156-a-A-17 / CCGTTATCCGAGGCGGT / Members of target genus / 1156 / 17 / 63 / +
Acidobacterium / KO 464 / S-G-Acido-0984-a-A-19 / CCACTACATTTCGAGCCCA / Members of target genus / 984 / 19 / 60.8 / +
Acidobacterium / KO 465 / S-G-Acido-0298-a-A-17 / GTGTGTCCGTGCGCCCT / Members of target genus / 298 / 17 / 63.9 / +
Acidovorax avenae subsp. avenae, cattleyae, citrulli / KO 201 / S-*-Aaacc-0644-a-A-18 / GCCGTACTCCAGCGATGC / Target species / 644 / 18 / 63.7 / +
Acidovorax avenae subsp. avenae, cattleyae, citrulli / KO 202 / S-*-Aaacc-0443-a-A-19 / GAAGAAGGCTTTTCGTTCC / Target species / 443 / 19 / 58.7 / +
Acidovorax avenae subsp. avenae, cattleyae, citrulli / KO 466 / S-*-Aaacc-0140-a-A-18 / TTTCGCCTCGTTATCCCC / Target species, Comomonas sp., A. konjaci / 140 / 18 / 62.7 / +
Acinetobacter / KO 252 / S-G-Acin-0651-a-A-22 / TACCATCCTCTCCCATACTCTA / Target genus / 651 / 22 / 58.3 / +
Acinetobacter calcoaceticus / KO 254 / S-S-Acalc-0576-a-A-18 / TTAATTAGCCGCCTACGC / Target species and uncultured / 576 / 18 / 59.1 / +
Acinetobacter calcoaceticus / KO 340 / S-*-Acalc-1135-a-A-22 / ATCCTTAAAGTTCCCGACATTA / Target species, uncultured, and A. baumanii / 1135 / 22 / 60.8 / +
Acinetobacter calcoaceticus / KO 341 / S-*-Acalc-0468-a-A-24 / GAGTAACGTCCACTATCTCTAGGT / Target species, A. haemolyticus, and A. baumanii / 468 / 24 / 59 / +
Acinetobacter lwoffii / KO 233 / S-S-Alwo-0574-a-A-18 / TAATTGGCCACCTACGCG / Target species, uncultured bacteria,1 Sphingobacterium sp. / 574 / 18 / 62.2 / +
Acinetobacter lwofii / KO 253 / S-*-Alwo-0153-a-A-19 / GCATCCCTTTCGAGATGTT / Target species and some other Acinetobacter species / 153 / 19 / 59 / +
Actinomadura / KO 467 / S-*-Actma-0449-a-A-20 / GGTACCGTCACGTTAGCTTC / Members of target genus, a few Actinomycetes / 449 / 20 / 59.4 / nt
Actinomadura / KO 468 / S-*-Actma-0732-a-A-20 / CAGTACAGGCCCAGAGAACC / Members of target genus, a few Actinomycetes / 732 / 20 / 61.3 / nt
Actinomadura species A / KO 469 / S-*-AcmaA-0611-a-A-18 / AGACCCACGGTTAAGCCG / Members of target genus, Streptomycoides sp., Thermomonospora sp. Sarracenospora / 611 / 18 / 62.5 / nt
Actinomadura species B / KO 470 / S-*-AcmaB-0611-a-A-20 / AGACCCACAGTTAAGCCGTG / Members of target genus, Excellospora viridulata, A. nitrogenes / 611 / 20 / 62 / nt
Actinomyces / KO 268 / S-G-Actin-0731-a-A-19 / CAGTAACGGCCCAGAGACC / Target genus / 731 / 19 / 61.9 / +
Actinomyces / KO 269 / S-*-Actin-0422-a-A-20 / GAAAGAGGTTCACAACCCGA / Target genus and some Mycobacterium sp. / 422 / 20 / 61.7 / +
Actinomyces / KO 342 / S-G-Actin-1313-a-A-18 / CACGGTGTCGAGTTGCAG / Members of target genus / 1313 / 18 / 59.2 / +
Aeromonas / KO 343 / S-G-Aero-0080-a-A-19 / CGGCAAAAGTAGCAAGCTA / Members of target genus / 80 / 19 / 59.3 / +w
Aeromonas / KO 344 / S-G-Aero-0220-a-A-18 / CCTGGGCATATCCAATCG / Members of target genus / 220 / 18 / 60.8 / +
Aeromonas caviae / KO 345 / S-*-Acav-0450-a-A-24 / GCAGATATTAGCTACTGACCTTTC / Target species, A. jandaei A. punctata, A. sp., A. hydrophila / 450 / 24 / 60.3 / +
Aeromonas caviae, hydrophila / KO 346 / S-*-Acahy-0125-a-A-18 / CTCGACTGGGCAATTTCC / Target species, A. hydrophila, A. media, A. trota / 125 / 18 / 59.9 / +
Aeromonas hydrophila / KO 228 / S-*-AhydA-0466-a-A-23 / AGTAACGTCACAGTTGATACGTA / Target species, A. salmonicida / 466 / 23 / 56.8 / +
Aeromonas hydrophila / KO 229 / S-*-AhydB-0454-a-A-21 / ACGTATTAGGCATCAACCTTT / Target species, A. salmonicida / 454 / 21 / 58.9 / +
Agrobacterium tumefaciens / KO 23 / S-S-Agrtu-0133-b-A-20 / AGAGCTATTCCGCAGAGATG / Species / 136 / 20 / 59.2 / +
Agrobacterium tumefaciens / KO 272 / S-*-Agrtu-1007-a-A-19 / AGGACATCGTCTCCAATGC / Target species, 1 Rhizobium strain, Bradyrhizobium japonicum / 1007 / 19 / 59.1 / FN
Agrobacterium tumefaciens / KO 273 / S-*-Agrtu-1005-a-A-20 / ACAATGTCTCCACTGCCCAA / Target species, 2 Rhizobium strains, A. rubi / 1005 / 20 / 62.5 / +
Agrobacterium tumefaciens / KO 347 / S-*-Agrtu-1031-a-A-17 / ACCTGTTCTGGGGCCAG / Target species, other Agrobacterium species, Bradyrhizobium, Rhizobium / 1031 / 17 / 59.3 / +
Agrobacterium tumefaciens / KO 348 / S-*-Agrtu-1255-a-A-20 / TAGCTCGACATCGCTGTCTC / Target species, other Agrobacterium species, Bradyrhizobium / 1255 / 20 / 60.3 / +
Alcaligenes defragrans/ faecalis / KO 270 / S-*-Adefa-0212-a-A-20 / CCGCTCCAATAGTGAGAGGT / Target species / 212 / 20 / 61.2 / +
Alcaligenes faecalis / KO 271 / S-S-Afaec-825-a-A-18 / AACGGCCCCAACAGCTAG / Target species and some uncultured / 825 / 18 / 62.7 / +
Alcaligenes faecalis / KO 349 / S-S-Afaec-0473-a-A-20 / TGCAGATACCGTCAGCAGTA / Target species, uncultured / 473 / 20 / 59 / FN
Alcaligenes faecalis / KO 350 / S-S-Afaec-0578-a-A-19 / CTTTCCGAACCGCCTACAC / Target species, uncultured / 578 / 19 / 62.5 / +
Alphaproteobacteria / KO 240 / S-P-Alpha-0968-a-A-18 / GGTAAGGTTCTGCGCGTT / Phylum specific / 968 / 18 / 60.3 / +
Aneurinibacillus / KO 284 / S-G-Aner-0459-a-A-19 / GTCAGACCGGGAGGTCATC / Target genus / 459 / 19 / 60.7 / +
Aneurinibacillus / KO 351 / S-G-Aneur-0080-a-A-18 / CTAACCGCCGAAGAGCAA / Members of target genus / 80 / 18 / 61.5 / +
Aneurinibacillus / KO 352 / S-G-Aneur-0835-a-A-19 / ACTGAGGATTGGAGTCCCC / Members of target genus / 835 / 19 / 59.8 / +
Aneurinibacillus / KO 471 / S-G-Aneur-1014-a-A-21 / GCTCCGAAGAGAGCTCCTATC / Members of target genus / 1014 / 21 / 62.4 / +
Aneurinibacillus / KO 472 / S-G-Aneur-0198-a-A-21 / CTGTACGTGACCAAAGGTCTT / Members of target genus / 198 / 21 / 58.9 / +
Archaea / KO 31d / S-D-Arch-0917-a-A-18 / GTGCTCCCCCGCCAATTC / Archaea / 917 / 18 / 67.5 / nt
Arthrobacter / KO 317 / S-G-Arth-0210-a-A-20 / GAGTCCATCCAAAACCACAA / Target genus / 210 / 20 / 59.6 / +
Arthrobacter / KO 318 / S-G-Arth-0745-a-A-19 / CTCAGCGTCAGTTAATGCC / Target genus / 745 / 19 / 58.1 / +
Arthrobacter / KO 22 / S-G-Art2-1012-b-A-17 / AAGCGGGGCACCTGTTT / Genus / 1012 / 17 / 62.5 / FN
Arthrobacter/Micrococcus / KO 316 / S-*-ArMi-0625-a-A-17 / GTACCCACCGCAGATCC / Target genera, strain of Renibacterium, Acinetobacter / 625 / 17 / 58.9 / +
Azospirillium / KO 266 / S-G-Azo-0441-a-A-18 / GTCATCATCGTCGCGTGC / Target genus / 441 / 18 / 61.9 / +
Azospirillum brasilense / KO 205 / S-S-Azbr-1012-a-A-19 / GAACTGAAAGCCCGATCTC / Target species, Roseomonas fauriae / 1012 / 19 / 58.6 / +
Azospirillum brasilense / KO 353 / S-S-Azbr-0586-a-A-19 / ACATCTGACTGATCGGGCC / Target species / 586 / 19 / 61.5 / +
Azospirillum brasilense / KO 354 / S-S-Azbr-0821-a-A-19 / CACCCCAGCGTCTAGCATT / Target species / 821 / 19 / 62.7 / +
Azospirillum lipoferum / KO 267 / S-*-Alipo-0622-a-A-21 / GTATCAAAAGCTATTCCCAGG / Target species, Az. largomobile, uncultured sp. / 622 / 21 / 58.9 / FN
Azospirillum lipoferum / KO 473 / S-S-Alipo-0825-a-A-19 / CATGCACCCCGACGTCTAG / Target species / 825 / 19 / 63.5 / +
Azospirillum lipoferum / KO 355 / S-*-Alipo-0628-a-A-22 / CCTGCCAGTATCAAAAGCTATT / Target species, Az. largomobile / 628 / 22 / 61.5 / +
Azospirillum lipoferum / KO 356 / S-S-Alipo-1112-a-A-19 / GATGGCAACTGACGGTAGG / Target species / 1112 / 19 / 60 / +
Azotobacter / KO 276 / S-G-Azoto-0827-a-A-18 / GCTCTCAAGGAGCCCAAC / Target genus / 827 / 18 / 58.9 / +
Azotobacter beijerinckii / KO 277 / S-*-Abeij-0632-a-A-20 / AGTCAGGCAGTTTTGGATGC / Target species, Az. chroococcum, Azomonas macrocytogenes / 632 / 20 / 61.9 / +
Azotobacter beijerinckii / KO 278 / S-*-Abeij-0583-a-A-21 / CATCCAACTTACCAAACCACC / Target species, Ps. migulae, Az. salinestris / 583 / 21 / 61.7 / +
Azotobacter beijerinckii / KO 474 / S-S-Abeij-0466-a-A-21 / AACGTCAAAACTGCAAGGTAT / Target species / 466 / 21 / 59.3 / +
Azotobacter vinelandii / KO 279 / S-*-Avine-0992-a-A-21 / CTCTTGAAAGTTCGCAGGATG / Target species and Azomonas macrocytogenes / 992 / 21 / 62.3 / +
Azotobacter vinelandii / KO 280 / S-*-Avine-0631-a-A-19 / CCCAGTAGTTTTGGATGCG / Target species and Az. paspali / 631 / 19 / 60.8 / +
B. anthracis, cereus, mycoides, thuringiensis / KO 290 / S-*-Bac-0088-a-A-19 / CCGCCGCTAACTTCATAAG / Target species and uncultured / 88 / 19 / 61.1 / +
B. anthracis, cereus, mycoides, thuringiensis / KO 291 / S-*-Bac-1015-a-A-18 / CCGAAGGAGAAGCCCTAT / Target species and uncultured / 1015 / 18 / 58.5 / +
Bacillus / KO 285 / S-G-Bac-0459-a-A-21 / TCAAGGTGCGAGCAGTTACTC / Target genus / 459 / 21 / 62.6 / +
Bacillus badius / KO 286 / S-S-Bbad-0081-a-A-20 / AACTTGAACGGAAGCAAGCT / Target species / 81 / 20 / 61.6 / nt
Bacillus pumilus / KO 475 / S-S-Bpum-1240-a-A-20 / TTGCAGCCCTTTGTTCTGTC / Target species / 1240 / 20 / 63 / +
Bacillus pumilus / KO 476 / S-S-Bpum-0079-a-A-19 / GCTAACATCCGGGAGCAAG / Target species, uncultured / 79 / 19 / 62.6 / FN
Bacillus pumilus / KO 477 / S-S-Bpum-0192-a-A-21 / AAACCGTCTTTCATCCTTGAA / Target species, uncultured / 192 / 21 / 61.4 / FN
Bacillus pumilus / KO 478 / S-S-Bpum-0174-a-A-20 / GGTTCAAGGAACTATCCGGT / Target species, uncultured / 174 / 20 / 60.4 / +
Bacillus smithii / KO 357 / S-S-Bsmit-0183-a-A-19 / CAACCTTCCTTCATGCGAA / Target species / 183 / 19 / 61 / +
Bacillus smithii / KO 358 / S-S-Bsmit-0837-a-A-19 / CACTAAAGGGTGGAAGCCC / Target species, and uncultured / 837 / 19 / 61.5 / +
Bacillus smithii / KO 287 / S-S-Bsmit-0063-a-A-20 / AGCTTCTTGAAAGTCCGCTC / Target species / 63 / 20 / 61.1 / +
Bacillus stearothermophilus / KO 288 / S-S-Bstea-0088-a-A-17 / GCCGCTGACCGAATCAA / Target species / 88 / 17 / 61.8 / +
Bacillus stearothermophilus / KO 359 / S-S-Bstea-0202-a-A-18 / AGTGACAGCCCAAAGGCC / Target species / 202 / 18 / 62 / +
Bacillus subtilis / KO 479 / S-*-Bsub-0193-a-A-20 / CCGAAGCCACCTTTTATGTT / Target species, B. atrophaeu, B. mojavensis, B. vallismortis, B. amyloliquefaciens / 193 / 20 / 62 / +
Bacillus subtilis / KO 480 / S-*-Bsub-0064-a-A-18 / AGCTCCCATCTGTCCGCT / Target species, B. atrophaeu, B. mojavensis, B. vallismortis, B. amyloliquefaciens / 64 / 18 / 61.5 / +
Bacillus subtilis / KO 481 / S-*-Bsub-1012-a-A-19 / CGAAGGGGACGTCCTATCT / Target species, B. mojavensis, B. vallismortis / 1012 / 19 / 60.8 / +
Bacillus subtilis / KO 482 / S-S-Bsub-0176-a-A-19 / GCGGTTCAAACAACCATCC / Target species, uncultured Bacillus / 176 / 19 / 62.7 / +
Bacillus thermodenitrificans / KO 289 / S-*-Bther-0066-a-A-19 / AGCAAGCTCTCGTTCGGTC / Target species, 1 strain B. stearothermophilus and B. subteranneus / 66 / 19 / 61.9 / +
Bacillus thermodenitrificans / KO 360 / S-S-Bther-0460-a-A-17 / GCGCCGCCTTATTCAAA / Target species / 460 / 17 / 62.3 / +w
Bacillus thermodenitrificans / KO 361 / S-S-Bther-1229-a-A-17 / CCGCCCATTGTAAGCAC / Target species / 1229 / 17 / 58.9 / +w
Bacillus thermoglucosidasius / KO 292 / S-S-Bthgl-0083-a-A-21 / AGGGAATAACCCCTCTAACAC / Target species and uncultured / 83 / 21 / 59.5 / +
Bacillus thermoglucosidasius / KO 362 / S-S-Bthgl-1018-a-A-18 / AAGGGAGGAACGCCCTGT / Target species / 1018 / 18 / 63.3 / +
Bacillus thermoglucosidasius / KO 363 / S-S-Bthgl-0839-a-A-21 / CAGCACTAAAGGGAATAACCC / Target species / 839 / 21 / 61.2 / +
Bacteroides / KO 483 / S-G-Bact-0227-a-A-19 / TAATGGAACGCATCCCCAT / Members of target genus / 227 / 19 / 62.8 / +
Bacteroides / KO 484 / S-G-Bact-0606-a-A-18 / TACGGTTGAGCCGCAAAC / Members of target genus, uncultured / 606 / 18 / 61.8 / +
Bacteroides, Prevotella / KO 485 / S-*-BacPr-0302-a-A-18 / ATGTGGGGGACCTTCCTC / Members of target genera / 302 / 18 / 60.2 / +
Brevibacillus / KO 281 / S-G-Brevi-1242-a-A-19 / TAGCATCCCGTTGTACCAA / Target genus / 1242 / 19 / 58.8 / +
Brevibacillus / KO 364 / S-G-Brevi-0218-a-A-18 / CAGGCCCATCTCCCAGTG / Target species / 218 / 18 / 62.7 / +
Brevibacillus / KO 365 / S-G-Brevi-0672-a-A-19 / ACACGTGGAATACCGCTTT / Members of target genus / 672 / 19 / 59.8 / +
Burkholderia / KO 486 / S-*-Burk-0834-a-A-23 / GTTACTAAGGAAATGAATCCCC / Target genus, Ralstonia, Pseudomonas, Pandoraea / 834 / 23 / 59.8 / +
Burkholderia / KO 487 / S-G-Burk-0224-a-A-18 / AATCAGCCATCGGCCAAC / Members of target genus / 224 / 18 / 62.9 / +
Burkholderia / KO 234e / S-G-Burk-1238-a-A-18 / ACCCTCTGTTCCGACCAT / Genus specific / 1238 / 18 / 58.1 / +
Burkholderia cepacia / KO 368 / S-S-Bcep-0583-a-A-19 / CATCGGTCTTAGCAAACCG / Target species and other Burkholderia sp. / 583 / 19 / 61 / +
Burkholderia cepacia / KO 369 / S-*-Bcep-0462-a-A-20 / TCATCCCCCGACTGTATTAG / Target species and B. multivorans / 462 / 20 / 59.5 / +
Campylobacter / KO 488 / S-G-Campy-0218-a-A-23 / TATAGTCTCATCCTACACCGAAA / Members of target genus / 218 / 23 / 59.1 / +
Campylobacter / KO 489 / S-G-Campy-0654-a-A-20 / CATCTGCCTCTCCCTCACTC / Members of target genus / 654 / 20 / 60.8 / +
Campylobacter coli/jejuni / KO 490 / S-*-Ccoje-0436-a-A-23 / TCAGAATTCTTCCCTAAGAAAAG / Members of target species / 436 / 23 / 60.3 / +w
Campylobacter jejuni / KO 370 / S-S-Cjej-0834-a-A-21 / ACTGAGATGACTAGCACCCCA / Target species and other Campylobacter sp. / 834 / 21 / 61.3 / +
Campylobacter jejuni / KO 371 / S-S-Cjej-0184-a-A-21 / TGTTGTCCTCTTGTGTAGGGC / Target species and other Campylobacter sp. / 184 / 21 / 62 / +
Campylobacter jejuni / KO 372 / S-S-Cjej-1014-a-A-22 / AAGCTAGCACCCTCATATCTCT / Target species and other Campylobacter sp. / 1014 / 22 / 59.8 / +
Cellulophaga / KO 491 / S-G-Cellu-0128-a-A-22 / CCCTTAGTGTAAGGCAGATTGT / Members of target genus / 128 / 22 / 60.9 / +
Cellulophaga / KO 492 / S-G-Cellu-0208-a-A-23 / CGCATACTCATCTTACACCGTAA / Members of target genus / 208 / 23 / 62.8 / +
Cellulophaga / KO 493 / S-G-Cellu-0459-a-A-21 / TACCGTCACCAGACTACACGT / Members of target genus / 459 / 21 / 59.6 / +
Chryseobacterium / KO 494 / S-G-Chrys-0193-a-A-21 / TCTCTATCCACCGGAGTTTTC / Members of target genus, uncultured / 193 / 21 / 60.8 / +
Chryseobacterium / KO 495 / S-*-Chrys-0583-a-A-21 / CACCACTGACTTACAGATCCG / Members of target genus, uncultured, 1 Flavobacterium sp. / 583 / 21 / 59.6 / +
Chryseobacterium / KO 496 / S-*-Chrys-0219-a-A-18 / GCGTGCCCATCTCTATCC / Members of target genus, uncultured, 1 Flavobacterium sp. / 219 / 18 / 59.7 / +
Clostridium A / KO 255 / S-*-Clost-0158-a-A-21 / GCGGTATTAATCTTCCTTTCG / Some members of target genus / 158 / 21 / 61.8 / +
Clostridium B / KO 256 / S-*-Clos-0158-a-A-20 / GCGGTATTAATCTCCCTTTC / Some members of target genus / 158 / 20 / 58.6 / +
Clostridium beijerinckia / KO 258 / S-S-Cbeij-0184-a-A-18 / AATTGCTATGCCATGCGG / Target species and some strains of C. acetobutylicum, C. calipstrosporum, C.roseum / 184 / 18 / 61.9 / +
Clostridium beijerinckii / KO 497 / S-*-Cbeij-1009-a-A-18 / AGGGCTTCCCCGATTAAG / Target species, C. subterminale, C. thiosulforeducens, C. acetobutylicum, C.roseum / 1009 / 18 / 61.3 / +
Clostridium beijerinckii / KO 373 / S-S-Cbeij-0845-a-A-17 / CGTTAGGGCGGCACAGA / Target species / 845 / 17 / 62.2 / +w
Clostridium beijerinckii / KO 374 / S-S-Cbeij-1241-a-A-23 / GGTTTAGCATCTCTCTGTACCAG / Target species, and other Clostridium sp. / 1241 / 23 / 60.6 / +
Clostridium bifermentans / KO 259 / S-*-Cbif-0162-a-A-22 / CCCGTATTAGTATACCTTTCGG / Target species and 1 C. difficle strain, uncultured / 162 / 22 / 61.4 / +
Clostridium bifermentans / KO 375 / S-S-Cbif-0191-a-A-20 / CGGAGCTTTGATACAAAAGC / Target species / 191 / 20 / 60.3 / +
Clostridium bifermentans / KO 376 / S-S-Cbif-0996-a-A-20 / TAGGGAGAGGTCAGTGGGAT / Target species and uncultured sp. / 996 / 20 / 61 / +
Clostridium bifermentans, difficle / KO 261 / S-*-Cbidi-0135-a-A-21 / ATGTTATCCGTGTGTACAGGG / Target species / 135 / 21 / 59.4 / +
Clostridium butyricum / KO 226 / S-*-Cbut-0183-a-A-21 / GCTGTACCATGCGGTACTACA / Target species, C. kainantoi, uncultured bacteria / 183 / 21 / 60.9 / +
Clostridium butyricum / KO 377 / S-S-Cbut-1012-a-A-21 / AAGTGGCTTCCTCCATTACAG / Target species / 1012 / 21 / 61 / +
Clostridium butyricum / KO 378 / S-S-Cbut-1266-a-A-22 / TTATAGTTTTGCTCACTCTCGC / Target species / 1266 / 22 / 59.9 / +
Clostridium difficle / KO 227 / S-S-CdifC-1009-a-A-19 / GGGAACTCTCCGATTAAGG / Target species / 1009 / 19 / 58.2 / +
Clostridium difficle / KO 379 / S-S-Cdif-0208-a-A-20 / GGTCCATCCTGTACTGGCTC / Target species and uncultured sp. / 208 / 20 / 60.8 / +
Clostridium difficle / KO 498 / S-S-Cdiff-0068-a-A-20 / CCGCTCTTTACCGAAGTAAA / Target species / 68 / 20 / 60.3 / +
Clostridium fallax / KO 221 / S-S-CfalA-0062-a-A-20 / GAAAACTCTCTCGCTCGACT / Target species / 62 / 20 / 58.1 / +
Clostridium fallax / KO 222 / S-S-CfalB-1443-a-A-19 / GCCCCCTTTACAGGTTAGC / Target species / 1443 / 19 / 61.3 / +
Clostridium fallax, perfringens / KO 264 / S-*-Cfape-1417-a-A-20 / GACTTCGGGTATTGCCAACT / Target species / 1417 / 20 / 61.4 / +
Clostridium formicoaceticum / KO 257 / S-S-Cform-0233-a-A-22 / CCAACTAGCTAATACAGGACGC / Target species / 233 / 22 / 61.8 / nt
Clostridium formicoaceticum / KO 380 / S-*-Cform-0596-a-A-20 / CGTAGCCTTTCACCCTAGAC / Target species, C. felsineum, C. aceticum / 596 / 20 / 58.9 / nt
Clostridium formicoaceticum / KO 381 / S-*-Cform-1002-a-A-20 / GCTTCTGTTAAAAAGCGGTC / Target species, C. felsineum / 1002 / 20 / 59.7 / nt
Clostridium histolyticum, limosum, proteolyticum / KO 260 / S-*-Cplh-0825-a-A-20 / ATTGAAACCCCGACACCTAG / Target species and uncultured / 825 / 20 / 61.2 / +
Clostridium histolyticum, limosum, proteolyticum / KO 382 / S-*-Chlp-1148-a-A-20 / TACCCAGGCAGTCTTGCTAG / Target species / 1148 / 20 / 60.1 / +
Clostridium histolyticum, limosum, proteolyticum / KO 383 / S-*-Chlp-0825-a-A-20 / AGTATTGAAACCCCGACACC / Target species / 825 / 20 / 61 / +
Clostridium perfringens / KO 225 / S-S-Cperf-0185-a-A-20 / CCTTTGGTTGAATGATGATG / Target species, uncultured bacteria / 185 / 20 / 57.7 / +
Clostridium perfringens / KO 384 / S-S-Cper-0828-a-A-18 / TGTTGAAACCCCCACACC / Target species, uncultured sp. / 828 / 18 / 60.2 / FN
Clostridium tetani / KO 262 / S-S-Ctet-0220-a-A-17 / CGGGCCCATCTCAAAGC / Target species and some other Clostridium species / 220 / 17 / 63.2 / +
Clostridium tetani / KO 263 / S-S-Ctet-0837-a-A-18 / GCACAGAAGGTTGGACCC / Target species, C. cochlearium, C. magnum / 837 / 18 / 59.1 / +
Comamonas denitrificans / KO 385 / S-S-Cden-0079-a-A-18 / CGTCAGCATCCCGAAAGA / Target species, uncultured sp. / 79 / 18 / 61.2 / nt
Comamonas denitrificans / KO 386 / S-S-Cden-0834-a-A-23 / CGTTACTGAGAAAATAAATTCCC / Target species / 834 / 23 / 60.8 / nt
Comomonas denititrificans / KO 275 / S-S-Cden-0444-a-A-19 / CCCAAGACTTTTCGTTCCG / Target species and uncultured / 444 / 19 / 62.5 / nt
Comomonas/Acidovorax / KO 274 / S-*-CoAc-0658-a-A-17 / TTCCATCCCCCTCTGCC / Target species and some strains of Burkholderia, Hydrogenophaga, Aquaspirillium / 658 / 17 / 62 / +
control oligo / KO 18 / - / AGGAAGGAAGGAAGGAAG / 18 / 54.6 / +
Derxia gummosa / KO 499 / S-S-Dgum-0822-a-A-21 / TACCAATCAGTATCCTGACCG / Target species / 822 / 21 / 59.7 / +
Derxia gummosa / KO 500 / S-S-Dgum-0181-a-A-18 / GCTTTCCACCTTAGTGCG / Target species / 181 / 18 / 58.1 / +
Derxia gummosa / KO 501 / S-S-Dgum-0983-a-A-19 / CGAGCATGTCAAGCGTAGG / Target species / 983 / 19 / 61.6 / +
Derxia gummosa / KO 502 / S-S-Dgum-0439-a-A-17 / CCGTTTCGTTCTCGCCA / Target species / 439 / 17 / 62.1 / +
EnterobacteriacaeB / KO 247 / S-*-Enter-0834-a-A-17 / ACGCCTCAAGGGCACAA / Enteric bacteria / 834 / 17 / 61.2 / +w
EnterobacteriacaeD / KO 246 / S-*-Enter-1250-a-A-19 / GCGAGGTCGCTTCTCTTTG / Enteric bacteria / 1250 / 19 / 62.7 / +
Enterococcus / KO 250 / S-G-Ecocc-0130-a-A-17 / CCCCTTCTGATGGGCAG / Target genus / 130 / 17 / 59.9 / FN
Enterococcus / KO 388 / S-*-Ecocc-0469-a-A-21 / AGATACCGTCAAGGGATGAAC / Target species and 1 Carnobacterium sp. / 469 / 21 / 61.4 / +
Enterococcus, Lactobacillus / KO 389 / S-*-EntLa-0152-a-A-21 / TAGCACCTGTTTCCAAGTGTT / Target genera, uncultured sp. / 152 / 21 / 59.7 / +
Erwinia amylovora / KO 212 / S-S-Eamya-0444-a-A-18 / ACCTCTTCCCCTTCCTCC / Target species / 444 / 18 / 59.1 / +
Erwinia amylovora / KO 213 / S-S-Eamyb-0445-a-A-18 / CCTCTCACCCTTCCTCCC / Target species / 445 / 18 / 60.1 / +
Erwinia amylovora / KO 390 / S-S-Eamy-0834-a-A-18 / CCACTCCTCAGGGGAACA / Target species / 834 / 18 / 59.3 / +
Escherichia coli / KO 248 / S-*-Ecoli-0448-a-A-22 / TTAACTTTACTCCCTTCCTCCC / Target species and some Shigella/Serratia / 448 / 22 / 61.9 / +
Escherichia coli / KO 387 / S-*-Ecoli-0998-a-A-21 / TCATCTCTGAAAACTTCCGTG / Target species and some Enterobacteriacae / 998 / 21 / 59.7 / +
EUB 338b / KO 27 / S-D-Bact-0338-a-A-18 / GCTGCCTCCCGTAGGAGT / Universal, most bacteria / 338 / 18 / 61.4 / +
EUB 338IIc / KO 28 / S-*-BactP-0338-a-A-18 / GCAGCCACCCGTAGGTGT / Universal, phylum Planctomycetes / 338 / 18 / 62.7 / nt
EUB 338IIIc / KO 29 / S-*-BactV-0338-a-A-18 / GCTGCCACCCGTAGGTGT / Universal, phylum Verrucomicrobia / 338 / 18 / 62.7 / nt
Haemophilus influenzae / KO 217e / S-*-Hinf-0185-a-A-18 / CCGCACTTTCATCTTCCG / Target species, H. haemolyticus / 185 / 18 / 61.1 / +
Haemophilus influenzae / KO 393 / S-*-Hinf-0469-a-A-25 / GTATTTAACGTCAATTTGATGTACT / Target species and H. haemolyticus / 469 / 25 / 58.7 / +
Haemophilus influenzae / KO 394 / S-*-Hinf-0452-a-A-25 / TTGATGTACTATTAACACATCAACC / Target species and H. haemolyticus / 452 / 25 / 59.3 / +
Helicobacter pylori / KO 219 / S-*-HpylA-0162-a-A-24 / GGGAGTATCTGGTATTAATCATCG / Target species, H. nemestrinae, H. cetorum, H. tursipssae, H. heilmanii / 162 / 24 / 62.5 / +
Helicobacter pylori / KO 220f / S-*-HpylB-0221-a-A-22 / GGACATAGGCTGATCTCTTAGC / Target species, H. nemestrinae, H. cetorum, H. tursipssae, H. heilmanii / 221 / 22 / 60.3 / +
Helicobacter pylori / KO 395 / S-*-Hpyl-0583-a-A-21 / CACACCTGACTGACTATCCCG / Target species / 583 / 21 / 62 / +
Herbaspirillum rubrisubalbica / KO 206 / S-S-Hrub-0460-a-A-25 / CCGTCATTAGTAGTAGATATTAGCT / Target species / 460 / 25 / 58.1 / +
Herbaspirillum rubrisubalbica / KO 503 / S-*-Hrub-0629-a-A-20 / CGTGCAGTCTCAAATGCAAT / Target species, H. frisingensis, P. huttiensis / 629 / 20 / 61.2 / +
Herbaspirillum rubrisubalbica / KO 396 / S-*-Hrub-0065-a-A-18 / AAGCTCCTATGCTGCCGT / Target species, H. frisingensis / 65 / 18 / 59.8 / +
Lactobacillus / KO 320 / S-G-Lact-1148-a-A-19 / CGGCAGTCTCACCAGAGTG / Target genus / 1148 / 19 / 60.4 / +
Lactobacillus brevis / KO 321 / S-S-Lbrev-0075-a-A-19 / GCAAGCACGTCATTCAACG / Target species / 75 / 19 / 62.1 / +
Lactobacillus brevis / KO 397 / S-S-Lbrev-0218-a-A-19 / GCGGGATCATCCAGAAGTG / Target species and uncultured sp. / 218 / 19 / 62.3 / +
Lactobacillus brevis / KO 398 / S-S-Lbrev-0465-a-A-19 / CCGTCAACCCTTGAACAGT / Target species and uncultured sp. / 465 / 19 / 59.4 / +
Lactobacillus farciminis / KO 322 / S-S-Lfar-0443-a-A-21 / CTCTCACGCATGTTCTTCTTC / Target species / 443 / 21 / 59.3 / +
Lactobacillus farciminis / KO 399 / S-S-Lfar-0183-a-A-24 / AGCTACGATCATGTGAAAGTAGTT / Target species / 183 / 24 / 60.4 / +
Lactobacillus farciminis / KO 400 / S-*-Lfar-0068-a-A-21 / AGCTTCAATCTTCAGGATGGT / Target species and L. kimchii / 68 / 21 / 60.2 / +
Lactobacillus maltaromicus / KO 324 / S-*-Lmalt-0076-a-A-22 / GTTAAAGAGCAAGCTCTTCAAC / Target species, L. pisicola, L. carnis / 76 / 22 / 58.7 / +w
Lactobacillus maltaromicus / KO 504 / S-*-Lmalt-0086-a-A-21 / GCCACTCACTTGGTTAAAGAG / Target species, L. piscicola / 86 / 21 / 59.1 / +
Lactobacillus maltaromicus / KO 401 / S-*-Lmalt-0177-a-A-21 / CATGCGATTCCTGAAACTATG / Target species, Carnobacterium piscicola / 177 / 21 / 60.6 / +
Lactobacillus maltaromicus / KO 402 / S-*-Lmalt-0190-a-A-21 / CCACCTTTCCTTCAAGAATCA / Target species, Carnobacterium piscicola, L. gallinarum / 190 / 21 / 61.6 / +
Lactobacillus panis / KO 323 / S-S-Lpan-0126-a-A-18 / CGCTTTAGGGCAGGTTGC / Target species and uncultured / 126 / 18 / 63.6 / +
Lactobacillus panis / KO 403 / S-S-Lpan-0190-a-A-23 / GAAACCATCTTTGATACGAAAAC / Target species / 190 / 23 / 60.9 / FN
Lactobacillus panis / KO 404 / S-S-Lpan-0215-a-A-20 / GCCCATCCTAAAGTGATAGC / Target species / 215 / 20 / 58.9 / +
Lactobacillus panis / KO 505 / S-S-Lpan-0093-a-A-18 / GCCGCTCACTGGTAATCC / Target species, L. vaginalis, L. oris, L. reuteri, L. frumenti / 93 / 18 / 59.9 / +
Lactobacillus panis / KO 506 / S-*-Lpan-0061-a-A-17 / GCCAGTGCGCTCGACTT / Target species, L. vaginalis, L. frumenti, L. pontis, L. oris / 61 / 17 / 61.1 / +
Lactobacillus plantarum / KO 325 / S-S-Lplan-0188-a-A-19 / CTTTCAAGCTCGGACCATG / Target species / 188 / 19 / 60.4 / +
Lactobacillus plantarum / KO 507 / S-*-Lplant-0086-a-A-23 / CACTCAAATGTAAATCATGATGC / Target species, L. arizonae / 86 / 23 / 60.2 / +
Lactobacillus plantarum / KO 405 / S-*-Lplan-0068-a-A-22 / AGCACCAATCAATACCAGAGTT / Target species, L. arizonae, L. pentosus / 68 / 22 / 60.7 / +
Lactobacillus plantarum / KO 406 / S-*-Lplan-0466-a-A-23 / TAAATACCGTCAATACCTGAACA / Target species, L. arizonae, L. pentosus, L. paracasei / 466 / 23 / 60.1 / +
Listeria / KO 407 / S-G-List-0063-a-A-18 / CTTCCTCCGTTCGTTCGA / Members of target genus / 63 / 18 / 60.5 / +
Listeria / KO 408 / S-G-List-0470-a-A-21 / TAGATACCGTCAAGGGACAAG / Members of target genus / 470 / 21 / 59.3 / +
Listeria monocytogenes / KO 409 / S-G-Lmono-0183-a-A-17 / TCAAAAGCGTGGCATGC / Target species / 183 / 17 / 60.2 / +
Listeria monocytogenes / KO 249 / S-S-Lmono-1239-a-A-20 / GCGACCCTTTGTACTATCCA / Target species / 1239 / 20 / 59.8 / +
Low G+C / KO 319 / S-*-LGC-0353-a-A-20 / GAAGATTCCCTACTGCTGCC / Firmicutes, Low G+C Bacteria / 353 / 20 / 61 / +
Methanogen / KO 331 / S-*-Meth-0311-a-A-21 / CCTTGTCTCAGGTTCCATCTC / Methanothermobacter, Methanibrevibacter, Methanobacterium / 311 / 21 / 60.4 / nt
Methanogen / KO 410 / S-*-Meth-0816-a-A-20 / CAACACCAAGTCCACATCGT / Methanobacterium,Methanosphaera,Methanobrevibacter / 816 / 20 / 60 / nt
Methanogen / KO 411 / S-*-Meth-0858-a-A-20 / GGACTTAACAGCTTCCCTTC / Methanobacterium,Methanosphaera,Methanobrevibacter,Methanothermobacter / 858 / 20 / 58 / nt
Methanogen / KO 508 / S-*-Meth-0427-a-A-19 / CACTTCTGAAAAGCCACCC / Methanothermobacter, Methanobacterium / 427 / 19 / 59.6 / nt
Methanogen / KO 509 / S-*-Meth-0643-a-A-20 / CCCGACCTCGAGTCATGATA / Methanothermobacter, Methanobacterium / 643 / 20 / 62.3 / nt
Methanogen / KO 510 / S-*-Meth-1128-a-A-18 / CCCATAAGGGTTCCGCTG / Methanothermobacter, Methanobacterium / 1128 / 18 / 62.9 / nt
Methylobacterium / KO 511 / S-G-Mbact-598-a-A-17 / GCCACAGGCTTTCACCC / Members of target genus, uncultured / 598 / 17 / 60 / +
Methylobacterium / KO 512 / S-G-Mbact-642-a-A-18 / CGGTCTCAAGCCAACCAG / Members of target genus, uncultured / 642 / 18 / 60.6 / +
Methylobacterium / KO 513 / S-G-Mbact-1001-a-A-20 / CCCGATCTCTCGAGGTAACA / Members of target genus, uncultured / 1001 / 20 / 61.9 / +
Methylobacterium / KO 514 / S-G-Mbact-1030-a-A-17 / CTGTGTGCACGCCTCCG / Members of target genus, uncultured / 1030 / 17 / 62.7 / +
Microbacterium / KO 515 / S-G-Micro-0843-a-A-18 / AGCTGCGTCACGGAATCC / Members of target genus, uncultured / 843 / 18 / 62.9 / +
Microbacterium / KO 516 / S-G-Micba-0818-a-A-20 / GACCCCACAACTAGTTCCCA / Members of target genus, uncultured / 818 / 20 / 61.4 / +
Microbacterium / KO 517 / S-G-Micba-0135-a-A-20 / CAGCGCTTATCCCAGAGTCA / Members of target genus, uncultured / 135 / 20 / 63.1 / +
Micromonospora / KO 518 / S-*-Micsp-0138-a-A-18 / GGGGTTATCCCAAAGCCT / Target genus, Salinospora sp, Dactylosporangium sp. / 138 / 18 / 60.8 / nt
Micromonospora / KO 519 / S-G-Micsp-0845-a-A-17 / CTGCGGCACAGGGAACC / Target genus / 845 / 17 / 63.7 / nt
Micromonospora / KO 520 / S-*-Micsp-0990-a-A-18 / GTTTTGCGGCCATGTCAA / Target genus, Salinospora sp., Microspora sp., Dactylosporangium sp. / 990 / 18 / 62.2 / nt
Mycobacterium / KO 521 / S-G-Myco-0835-a-A-19 / GATCCCAAGGAAGGAAACC / Members of target genus, uncultured / 835 / 19 / 60.1 / nt
Mycobacterium / KO 522 / S-G-Myco-0996-a-A-18 / CTAGACGCGTCCTGTGCA / Members of target genus, uncultured / 996 / 18 / 61.1 / nt
Mycobacterium / KO 523 / S-G-Myco-0583-a-A-19 / GAACAACGCGACAAACCAC / Members of target genus / 583 / 19 / 60.9 / nt
Neisseria meningitidis / KO 230 / S-*-Nmena-0454-a-A-20 / GCTGGTATTAGCAACAGCCT / Target species, N. polysaccharea, N. lactima / 454 / 20 / 59.6 / +
Neisseria meningitidis / KO 231 / S-*-Nmenb-0454-a-A-20 / CGCTGATATTAGCAACAGCC / Target species, N. polysaccharea, N. lactima / 454 / 20 / 61 / +
Neisseria meningitidis / KO 412 / S-S-Nmena-0174-a-A-20 / CTCTCTCAAGACGTATGCGG / Target species and some other Neisseria sp. / 174 / 20 / 60.1 / +
Neisseria meningitidis / KO 413 / S-S-Nmena-0469-a-A-18 / CGTCATCAGCCGCTGATA / Target species and some other Neisseria sp. / 469 / 18 / 59.4 / +
Nitrobacter / KO 293 / S-G-Nitro-0999-a-A-17 / CTGCGACCGGTCATGGA / Target genus / 999 / 17 / 61.9 / nt
Nitrobacter winogradskyi / KO 298 / S-S-Nwin-1253-a-A-17 / GGTCGCCCCTTTGCTTC / Target species / 1253 / 17 / 62.5 / nt
Nitrosococcus mobilis / KO 299 / S-S-Nmob-1283-a-A-21 / CGGACTACGAAGTGCTTTGTG / Target species / 1283 / 21 / 63.2 / nt
Nitrosococcus mobilis / KO 300 / S-S-Nmob-1241-a-A-20 / GGCTACCCTCTGTACACTCC / Target species / 1241 / 20 / 57.9 / nt
Nitrosococcus mobilis / KO 414 / S-S-Nmob-0172-a-A-20 / TCCTCAGAGACTACGCGGTA / Target species, uncultured sp. / 172 / 20 / 60.1 / nt
Nitrosomonas communis / KO 301 / S-S-Ncom-0902-a-A-18 / GTGCCTCGATTCCCTTTC / Target species and uncultured / 902 / 18 / 59 / nt
Nitrosomonas communis / KO 302 / S-S-Ncom-0087-a-A-19 / CCGCTCTAAAAGCACAAGG / Target species and uncultured / 87 / 19 / 60.8 / nt
Nitrosomonas communis / KO 415 / S-S-Ncom-0438-a-A-20 / TAACTATTTCTTCCCGACCG / Target species / 438 / 20 / 59.7 / nt
Nitrosomonas europaea / KO 303 / S-S-Neur-0441-a-A-22 / ATTGCAACTCTTTCTTTCCGAC / Target species and uncultured / 441 / 22 / 63.2 / nt
Nitrosomonas europaea / KO 416 / S-S-Neur-0468-a-A-22 / GGTACCGTCATAAATCACAATT / Target species, uncultured sp. / 468 / 22 / 58.9 / nt
Nitrosomonas europaea / KO 417 / S-S-Neur-1122-a-A-23 / GCTCATTAAAAATGATAGCAATT / Target species, uncultured sp. / 1122 / 23 / 59.3 / nt
Nitrosomonas eutropha / KO 304 / S-S-Neut-0441-a-A-22 / ACTATGACTCTTTCTTTCCGAC / Target species and uncultured / 441 / 22 / 57.4 / nt
Nitrosomonas eutropha / KO 305 / S-S-Neut-0218-a-A-19 / ACATCAGCCGCTCCTTTAG / Target species and uncultured / 218 / 19 / 59.8 / nt
Nitrosomonas nitrosa / KO 306 / S-S-Nnit-0583-a-A-21 / CATCTGACTTATACAACCGCC / Target species and uncultured / 583 / 21 / 59.8 / nt
Nitrosomonas nitrosa / KO 307 / S-S-Nnit-0437-a-A-21 / CACAACTATTTCTTCCCGACC / Target species and uncultured / 437 / 21 / 61.3 / nt
Nitrosomonas nitrosa / KO 418 / S-*-Nnit-0466-a-A-22 / GTACCGTCATTCATTGTGGATA / Target species, N. communis, uncultured sp. / 466 / 22 / 59.8 / nt
Nitrosomonas oligotropha / KO 308 / S-S-Nolig-0643-a-A-20 / CTGCTGCACTCTAGCTCTGC / Target species and uncultured / 643 / 20 / 60.4 / nt
Nitrosomonas oligotropha / KO 309 / S-S-Nolig-0460-a-A-23 / CCGTCATGAATTATGATTATTAG / Target species and uncultured / 460 / 23 / 57.5 / nt
Nitrosomonas oligotropha / KO 419 / S-S-Nolig-0729-a-A-18 / CTAGCCCAGGAGGTTGCC / Target species / 729 / 18 / 61.9 / nt
Nitrosomonas ureae / KO 310 / S-S-Nure-0906-a-A-22 / CAGCACCTGTGTTTAGATTCTC / Target species / 906 / 22 / 59.1 / nt
Nitrosomonas ureae / KO 311 / S-S-Nure-0055-a-A-22 / CCCCACTTTCCTCCTTAGATAT / Target species / 55 / 22 / 61.7 / nt
Nitrosomonas ureae / KO 420 / S-S-Nurea-0341-a-A-21 / GATACCGTCATGAATTCTGGG / Target species / 341 / 21 / 61.5 / nt
Nitrosovibrio, Nitrospira / KO 296 / S-*-Nit-0740-a-A-20 / GCCTGAGCGTCAGTGTTAAC / Species of target genera / 740 / 20 / 60 / nt
Nitrosovibrio, Nitrospira / KO 297 / S-*-Nit-0439-a-A-18 / GTGACCGTTTCGTTCCGG / Species of target genera / 439 / 18 / 63.2 / nt
Nitrospira, Nitrosovibrio, Nitrosolobus / KO 294 / S-*-Nit-0638-a-A-23 / CACTCTAGCCTTGTAGTTTCAAA / Species of target genera / 638 / 23 / 59.4 / nt
Nitrospira, Nitrosovibrio, Nitrosolobus / KO 295 / S-*-Nit-0231-a-A-21 / ACTAGCTAATCAGACATCGGC / Species of target genera and some Ralstonia sp. / 231 / 21 / 58.8 / nt
Nitrospira, Nitrosovibrio, Nitrosolobus / KO 421 / S-*-Nitro-0841-a-A-19 / TGCGTTACCAAGTCCGTTA / Members of target genera / 841 / 19 / 59.3 / nt
Nocardia / KO 332 / S-*-Nocar-0183-a-A-19 / CACAAACCATGCGATTCGT / N.otitidiscaviarum, N. veterena / 183 / 19 / 62.3 / nt
Nocardia / KO 333 / S-*-Nocar-0679-a-A-21 / CGTCAGTTACTTCCCAGAGAC / Some members of target genus / 679 / 21 / 58.4 / +
Nocardia / KO 423 / S-G-Nocar-0183-a-A18 / ACCACAAGGGGGCCTACA / Target species and other Nocardia sp. / 1015 / 18 / 62.2 / +
Nocardia brasilense / KO 335 / S-S-Nbra-0183-a-A-21 / AGCACTGAAAGGTCATATCCG / Target species / 183 / 21 / 61.6 / +
Nocardia brasilense / KO 422 / S-S-Nbra-0157-a-A-18 / TTCCACCCAACAGCATGC / Target species / 157 / 18 / 61.6 / +
Nocardia vaccini / KO 334 / S-S-Nvac-0183-a-A-20 / CGATCATGCAACCAATGGTC / Target species / 183 / 20 / 63.4 / +
Nocardia vaccinii / KO 424 / S-S-Nvac-0608-a-A-22 / GCACACAGTTGAGCTGTATGTT / Target species / 608 / 22 / 59.9 / +
Nocardioides / KO 524 / S-G-Nodio-0612-a-A-19 / AGGCCAGGTGTTAAGCACC / Members of target genus / 612 / 19 / 61.8 / +
Nocardioides / KO 525 / S-G-Nodio-0126-a-A-19 / GAGCCTGGGGCAGATTACT / Members of target genus / 126 / 19 / 61 / +
Nocardioides / KO 526 / S-G-Nodio-0731-a-A-20 / AGGATACTCCCAGAGAACCG / Members of target genus / 731 / 20 / 60.2 / +
Nocardioides / KO 527 / S-G-Nodio-0655-a-A-20 / TCCATTCTCCCCTGAGTACC / Members of target genus / 655 / 20 / 60.5 / +
nonbinding control / KO 19 / - / AGAGAGAGAGAGAGAGAG / 18 / 40.1 / -
Paenibacillus / KO 283 / S-*-Paen-0145-a-A-19 / CGTTTCCGGTAGTTATCCC / Target genus and some Bacillus, Nocardiodies, Actinobacteria,Enterobacteriacae / 145 / 19 / 59.4 / +
Paenibacillus macerans / KO 282 / S-S-Pmac-0177-a-A-21 / ATGCGGAAGACTTGATTATCC / Target species / 177 / 21 / 61 / +
Paenibacillus macerans / KO 425 / S-S-Pmac-1007-a-A-23 / GAAGGAAAGCCATATCTCTACAG / Target species and Paenibacillus sp. / 1007 / 23 / 60.2 / +
Paenibacillus macerans / KO 426 / S-S-Pmac-0191-a-A-19 / CGCCTTTCCCAAGTCTCC / Target species / 191 / 19 / 61.9 / +
Pantoea / KO 528 / S-G-Pant-0059-a-A-20 / CTCTGTGCTACCGTCCGACT / Members of target genus, uncultured / 59 / 20 / 61.8 / +
Pantoea / KO 529 / S-G-Pant-0211-a-A-20 / TCATCCGATAGTGAGAGGCC / Members of target genus, uncultured / 211 / 20 / 61.6 / +
Pantoea / KO 530 / S-G-Pant-0460-a-A-21 / CAATCGACAGGGTTATTAACC / Members of target genus, uncultured / 460 / 21 / 59.2 / +
Paracoccus / KO 430 / S-G-Para-0642-a-A-20 / CGAACTCCAGACCGATAGTT / Members of target genus / 642 / 20 / 58.7 / +
Paracoccus / KO 431 / S-G-Para-0642-a-A-20 / CACCTGTCTCCAGGTCACC / Members of target genus / 1031 / 19 / 58.6 / +
Paracoccus denitrificans / KO 265 / S-S-Pden-0210-a-A-18 / GGGCTAATCCTTTGCCGA / Target species and Paracoccus sp. / 210 / 18 / 62.9 / FN
Paracoccus denitrificans / KO 427 / S-*-Pden-0139-a-A-20 / CCCAGGACTATTCCGTACCA / Target species, P. versutus, P. pantotrophus / 139 / 20 / 61.9 / +
Paracoccus denitrificans / KO 428 / S-S-Pden-0165-a-A-19 / GCGCATACGGTATTACCCC / Target species and other Paracoccus sp. / 165 / 19 / 62.8 / +
Paracoccus denitrificans / KO 429 / S-S-Pden-0993-a-A-17 / GCCGGTCCTGGGATGTC / Target species and other Paracoccus sp. / 993 / 17 / 62.1 / +
Propionibacterium / KO 432 / S-*-Prop-1140-a-A-19 / GGTCTCCACTGAGTCCCCA / Members of target genus, uncultured, Actinobacterium sp. / 1140 / 19 / 61.1 / +
Propionibacterium / KO 433 / S-*-Prop-0585-a-A-18 / ACTTCCGACGCGATCAAC / Members of target genus, uncultured, Actinobacterium sp. / 585 / 18 / 60.2 / +
Propionibacterium / KO 326 / S-*-Prop-0638-a-A-20 / TCCTCAAGTCAACCCGTATC / Target genus, and 1 strain Actinomyces, Mycobacterium / 638 / 20 / 59 / +
Proteus mirabilis, vulgaris / KO 531 / S-*-Pmivu-0826-a-A-23 / GTTCAAGACCACAACCTCTAAAT / Members of target genera / 826 / 23 / 60 / +
Proteus mirabilis, vulgaris / KO 532 / S-*-Pmivu-0643-a-A-23 / TCTACAAGACTCTAGCCAACCAG / Members of target genera / 643 / 23 / 61.1 / +
Proteus mirabilis, vulgaris / KO 533 / S-*-Pmivu-0196-a-A-21 / ATCTCTAAAGGATTCGCTGGA / Members of target genera, other Enterobacteriacae / 996 / 21 / 60.9 / +
Proteus mirabilis, vulgaris / KO 534 / S-*-Pmivu-0189-a-A-18 / AGAGCCCCTGCTTTGGTC / Members of target genera, P. penneri, uncultured / 189 / 18 / 61.3 / +
Pseudocardia thermophila / KO 337 / S-S-Ptherm-0611-a-A-21 / AAGCTCCCAGTTAAGCTGAAA / Target species / 611 / 21 / 61.5 / +w
Pseudomonas / KO 434 / S-G-Pseud-0082-a-A-20 / CCGCTCTCAAGAGAAGCAAG / Members of target genus / 82 / 20 / 62.3 / FN
Pseudomonas / KO 535 / S-*-Pseud-0435-a-A-20 / CCCTTCCTCCCAACTTAAAG / Ps. syringae, Ps. stutzeri, Ps. fluorescens, Ps. putida, Ps. aerogenes / 435 / 20 / 60.8 / +
Pseudomonas / KO 536 / S-*-Pseud-0583-a-A-21 / ATCCAACTTAACGAACCACCT / Ps. syringae,Ps. stutzeri,Ps. fluorescens, Ps. putida, Ps. pseudoalcaligenes / 583 / 21 / 60.5 / +
Pseudomonas / KO 537 / S-*-Pseud-0982-a-A-18 / CTGCATGTCAAGGCCTGG / Ps. stutzeri, Ps. putida / 982 / 18 / 61.3 / +
Pseudomonas aeruginosa / KO 12 / S-S-Psae-0148-a-A-22 / AGCGCCCGTTTCCGGACGTTAT / Pseudomonas species / 148 / 22 / 76.0 / +
Pseudomonas aeruginosa / KO 244 / S-S-Psae-0584-a-A-20 / CACATCCAACTTGCTGAACC / Species specific / 584 / 20 / 60.1 / +
Pseudomonas aeruginosa / KO 435 / S-*-Psae-066-a-A-18 / AAGCTCCCTTCATCCGCT / Target species, Ps. pseudoalcaligenes, Ps. stutzeri, Ps. graminis, Ps. citronellolis, Ps. boreopolis / 66 / 18 / 61.2 / +
Pseudomonas aeruginosa / KO 436 / S-S-Psae-0182-a-A-21 / CACTTTCTCCCTCAGGACGTA / Target species / 182 / 21 / 61.4 / +
Pseudomonas alcaligenes / KO 211 / S-*-Psalc-0631-a-A-21 / GCTCAGTAGTTTTGGAGGCAG / Target species, uncultured species, P. resinovorans / 631 / 21 / 61.7 / +
Pseudomonas alcaligenes / KO 437 / S-*-Psalc-0587-a-A-20 / TCACCTCCAACTTGCTGAAC / Target species, Ps. pseudoalcaligenes, Ps. alcaligenes, Ps. resinovorans / 587 / 20 / 59.8 / +
Pseudomonas alcaligenes, stutzeri / KO 438 / S-*-Palst-0066-a-A-19 / AGCAAGCTCCACTCATCCG / Target species, Ps. putida, Ps. mendocina, Ps. fragi, uncultured / 66 / 19 / 62.5 / +
Pseudomonas alcaligenes, stutzeri / KO 439 / S-*-Palst-0082-a-A-19 / CGCTGAATCATGGAGCAAG / Target species, Ps. putida, Ps. mendocina, uncultured / 82 / 19 / 61.3 / +
Pseudomonas fluorescens / KO 538 / S-G-Psfl-0082-a-A-19 / GCTCTCAAGAGGTGCAAGC / Target species, several other Ps. species / 82 / 19 / 59.6 / +w
Pseudomonas fluorescens / KO 539 / S-G-Psfl-0066-a-A-19 / CAAGCACCTCTCTACCGCT / Target species, several other Ps. species / 66 / 19 / 59.5 / +
Pseudomonas fluorescens / KO 540 / S-G-Psfl-0830-a-A-19 / AAGAGCTCAAGGCTCCCAA / Target species, several other Ps. species / 830 / 19 / 61.7 / +
Pseudomonas putida / KO 541 / S-G-Pspu-0842-a-A-19 / CTGCGCCACTAAAATCTCA / Target species / 842 / 19 / 58.9 / +
Pseudomonas putida / KO 542 / S-G-Pspu-0082-a-A-19 / CGCTGAATCGAAGAGCAAG / Target species / 82 / 19 / 61.1 / FN
Pseudonocardia / KO 336 / S-G-Pseno-0840-a-A-19 / GGCACAGAGACCGTGGAAT / Members of target genus / 840 / 19 / 61.7 / +
Pseudonocardia thermophila / KO 440 / S-S-Ptherm-0275-a-A-17 / GCCGGCTACCCTCCATC / Target species / 275 / 17 / 62.1 / FN
Ralstonia solanacearum, Pseudomonas syzygii, Blood disease bacterium / KO 203 / S-*-RPsBD-0069-a-A-18 / TAGCAAGCTACCCCCGCT / Target species / 69 / 18 / 62.8 / +
Ralstonia solanacearum, Pseudomonas syzygii, Blood disease bacterium / KO 366 / S-*-RPsBD-0460-a-A-21 / ATCCACTCCAGGTATTAACCG / Target genera / 460 / 21 / 60.9 / +
Ralstonia solanacearum, Pseudomonas syzygii,
Blood disease bacterium / KO 367 / S-*-RPsBD-0625-a-A-19 / AGTCACCAATGCAATTCCC / Target genera / 625 / 19 / 59.4 / +
Rhodococcus / KO 544 / S-G-Rhodo-0618-a-A-18 / CTGCAAGCCAGCAGTTGA / Members of target genus / 618 / 18 / 59.5 / nt
Rhodococcus / KO 545 / S-G-RhodA-0197-a-A-19 / CCATCCTGCACCGATAAAT / Members of target genus / 197 / 19 / 60 / nt
Rhodococcus / KO 546 / S-G-RhodB-0197-a-A-20 / CCATCCTGCACCAGTAAACC / Members of target genus / 197 / 20 / 62.1 / nt
Rhodococcus/Nocardia/Corynebacterium/ Gordonia/Mycobacterium / KO 543 / S-*-RNCGM-0731-a-A-19 / GTTACTGCCCAGAGACCCG / Members of target genera / 731 / 19 / 61.9 / +
Saccharomonospora / KO 312 / S-G-Sacc-0839-a-A-18 / CACGGGACACGTGAACAG / Target genus / 839 / 18 / 58.6 / +
Saccharomonospora / KO 313 / S-G-Sacc-0610-a-A-17 / CACGGTTAAGCCGCAGG / Target genus / 610 / 17 / 62.1 / +
Saccharomonospora / KO 547 / S-G-Sacc-0172-a-A-20 / AGCGTGTCCTATCCGGTATT / S. glauca, S. viridis, S. thermoviridis / 172 / 20 / 61.2 / +
Salmonella / KO 245 / S-*-Sal-0634-a-A-19 / CTCAAGCCTGCCAGTTTCG / Salmonella, Citrobacter, Enterobacter, Erwinia / 634 / 19 / 63.4 / +
Salmonella / KO 441 / S-*-Sal-0452-a-A-22 / CTGCGGTTATTAACCACAACAC / Members of target genus, and some other Enterobacteriacae / 452 / 22 / 62.7 / +w
Sphingobacterium / KO 548 / S-*-Sphin-0738-a-A-21 / GCGTCAATACCAGCTTAGTGA / Target genus, Flavobacterium sp., uncultured / 738 / 21 / 60.4 / +
Sphingobacterium / KO 549 / S-*-Sphin-0820-a-A-20 / CGCCAACATCGAGTTATCAT / S. multivorum, S. thalpophilum ,S. spiritivorum / 820 / 20 / 60.4 / +
Sphingobacterium / KO 550 / S-*-Sphin-0284-a-A-21 / TCTCCTCTCAGAGCCCCTAGA / S. multivorum, S. thalpophilum , S. spiritivorum, Flavobacterium sp. / 284 / 21 / 62.7 / +
Sphingobacterium / KO 551 / S-*-Sphin-0611-a-A-18 / CACTGCGATGGTTGAGCC / Target genus, Pedobacter sp. / 611 / 18 / 61.2 / +
Staphylococcus aureus / KO 218 / S-*-Saur-0069-a-A-19 / GAAGCAAGCTTCTCGTCCG / Target species, S. haemolyticus, uncultured bacteria / 69 / 19 / 62.7 / +
Staphylococcus aureus / KO 442 / S-S-Saur-0184-a-A-18 / CACTTTTGAACCATGCGG / Target species / 184 / 18 / 59.1 / +w
Staphylococcus aureus / KO 552 / S-S-Saur-0226-a-A-17 / GCTAATGCAGCGCGGAT / Target species / 226 / 17 / 61.9 / +
Staphylococcus aureus / KO 553 / S-S-Saur-0184-a-A-18 / CACTTTTGAACCATGCGG / Target species / 184 / 18 / 59.1 / +w
Stenotrophomonas maltophilia / KO 243 / S-*-Smalt-0574-a-A-18 / AACGACCACCTACGCACG / Target species, and some non-specific Pseudomonas/Stenotrophomonas / 574 / 18 / 61.2 / +
Stenotrophomonas maltophilia / KO 443 / S-S-Smalt-0630-a-A-20 / TAGTCGCCCAGTATCCACTG / Target species / 630 / 20 / 60.2 / FN
Stenotrophomonas maltophilia / KO 444 / S-S-Smalt-0466-a-A-17 / CGTCATCCCAACCGGGT / Target species, uncultured, and 3 Pseudomonas species / 466 / 17 / 62.8 / +
Streptococcus / KO 235 / S-G-Strep-0655-a-A-19 / CCACTCTCCCCTTCTGCAC / Genus specific / 655 / 19 / 61.4 / +
Streptococcus pyogenes / KO 216 / S-S-Stpy-0174-a-A-21 / GCGTTAGTCTCTCTTATGCG / Target species / 174 / 21 / 57.7 / +
Streptococcus pyogenes / KO 445 / S-S-Stpy-0467-a-A-19 / CCGTCACTTGGTGGATTTT / Target species, uncultured sp. / 467 / 19 / 59.7 / +
Streptococcus pyogenes / KO 446 / S-S-Stpy-0183-a-A-23 / CCTTTTAAATTACTAACATGCGT / Target species, uncultured sp. / 183 / 23 / 59.6 / +
Streptomyces / KO 314 / S-G-Strep-0139-a-A-18 / TCCAGGGCTTGTCCCAGA / Species of target genus / 139 / 18 / 62.8 / +
Streptomyces / KO 315 / S-G-Strep-0183-a-A-18 / CCATGCGGGACAGAGTGT / Species of target genus / 183 / 18 / 60.2 / FN
Thermoactinomyces / KO 07 / S-G-Thact-0623-a-A-22 / CAGTTTCAGGTGCCGCTCTGCG / Genus / 623 / 22 / 74.6 / +
Thermoactinomyces / KO 24 / S-G-Thact-0623-b-A-19 / CAGTTTCAGGTGCCGCTCT / Genus / 623 / 19 / 62.6 / +
Thermoactinomyces / KO 447 / S-*-Thact-0598-a-A-18 / CGCAGCCTTTCACACCTG / Target species and 1 Bacillus sp., 1 Paenibacillus sp. / 598 / 18 / 61.8 / +
Thermoactinomyces / KO 554 / S-G-Thact-0852-a-A-19 / AATGGGTTACCTTCGGCAC / Members of target genus / 852 / 19 / 61.8 / +
Thermoactinomyces / KO 555 / S-G-Thact-1152-a-A-18 / CTTTCACCGGCTGTCTCG / Members of target genus / 1152 / 18 / 60.9 / +
Thermocrispum agreste, municipale / KO 338 / S-*-Tagmu-0452-a-A-18 / CCCCTACCGTCACTCTCG / Target species, and uncultured / 452 / 18 / 59.6 / nt
Thermocrispum agreste, municipale / KO 339 / S-*-Tagmu-0066-a-A-18 / AAAGACCAGGCTTCAGCG / Target species, and uncultured / 66 / 18 / 60.1 / nt
Thermocrispum agreste, municipale / KO 448 / S-*-Tagmu-0597-a-A-17 / CCGGTTTTCACGGCAGA / Target species / 597 / 17 / 61.9 / nt
Thermomonospora chromogena / KO 10 / S-S-Thmch-1437-a-A-20 / GGACAACCGGTTAGGCCACG / Species / 1437 / 20 / 69.5 / +w
Thermomonospora chromogena / KO 556 / S-S-Thmch-0834-b-A-18 / GGGACCCGTGGAAGAACC / Target species / 834 / 18 / 63.5 / FN
Thermomonospora chromogena / KO 557 / S-S-Thmch-0211-b-A-17 / ATCCCCAGCCAGAACCC / Target species / 211 / 17 / 61.1 / FN
Thermomonospora chromogena / KO 329 / S-S-Thmch-0079-a-A-18 / GCTCCACACCCCAAAGGA / Target species / 79 / 18 / 62.4 / +
Thermomonospora chromogena, bispora / KO 330 / S-*-Thmcb-0062-a-A-17 / GAGTGCGGTCCTCGCTC / T. chromogena, T. bispora / 62 / 17 / 60 / +
Thermomonospora curvata / KO 11 / S-S-Thmcu-0447-a-A-22 / GCACCTACCGTCCAAACTTCGT / Species / 447 / 22 / 68.0 / FN
Thermomonospora curvata / KO 25 / S-S-Thmcu-0447-b-A-20 / ACCTACCGTCCAAACTTCGT / Target species / 447 / 20 / 60.9 / +
Thermomonospora curvata / KO 328 / S-S-Thmcu-0193-a-A-19 / AAGAGGGAACTTTCCACCC / Target species / 193 / 19 / 59.8 / +
Thermomonospora curvata / KO 449 / S-S-Thmcu-0463-b-A-19 / CTGCACCTACCGTCCAAAC / Target species / 463 / 19 / 60.2 / +
Thermus / KO 327 / S-G-Ther-0819-a-A-17 / CCCAGAGACCTAGCGCG / Target genus / 819 / 17 / 60.9 / +
Thermus / KO 450 / S-G-Therm-0629-b-A-17 / AGCGTATCCCACGCTCC / Members of target genus / 629 / 17 / 60.1 / +w
Thermus thermophilus / KO 01 / S-S-Thth-0068-a-A-19 / GAGTAAAACCCCGCGGCCC / Target species / 68 / 19 / 71 / +w
Thermus thermophilus / KO 21 / S-S-Ththa-0068-b-A-17 / GAGTAAAACCCCGCGGC / Target species / 68 / 17 / 62.9 / +w
Thermus thermophilus / KO 558 / S-S-Thth-0715-a-A-17 / CAGCGTCACGGGTGGAC / Target species / 715 / 17 / 61.2 / +
Thermus thermophilus / KO 559 / S-S-Thth-0180-a-A-18 / CCTTTGGACACACCCCAA / Target species / 180 / 18 / 60.5 / +w
Thermus thermophilus / KO 451 / S-*-Ththa-0193-a-A-18 / GCAAAGCCCTTTGGACAC / Target species, T. flavus / 193 / 18 / 60.1 / +
Universal 1389a- UNIV 1389b / KO 32 / S-D-Univ-1389-a-A-18 / ACGGGCGGTGTGTACAAG / Bacteria, not ‘Epsilonproteobacteria’ / 1389 / 18 / 61 / +
Vibrio / KO 251 / S-G-Vib-0730-a-A-18 / GTATCTGTCCAGGGGGCC / Target genus / 730 / 18 / 61 / nt
Vibrio cholerae / KO 232 / S-*-Vchol-0122-a-A-18 / TACCGGGCAATTTCCCAG / Target species, V. mimicus / 122 / 18 / 63.3 / nt
Vibrio cholerae / KO 452 / S-*-Vcol-0219-a-A-18 / CTGGGCATATCCGGTAGC / Target species, V. mimicus, uncultured / 219 / 18 / 60.8 / nt
Vibrio cholerae / KO 453 / S-*-Vcol-0440-a-A-21 / TTAACCACCTTCCTCCCTACT / Target species, V. mimicus, V. albenisis, uncultured / 440 / 21 / 60 / nt
Xanthomonas / KO 454 / S-G-Xanth-0211-a-A-18 / TCATTCAATCGCGCGAAG / Members of target genus / 211 / 18 / 62.7 / +
Xanthomonas / KO 455 / S-*-Xanth-0853-a-A-20 / TTCGATACTGCGTGCCAA / Members of target genus, Pseudomonas sp., Stenotrophomonas sp. / 853 / 20 / 60.2 / +
Xanthomonas / KO 560 / S-*-Xanth-0455-a-A-21 / ACAATCGGGTATTAACCGACT / Members of target genus, Stenotrophomonas sp. / 455 / 21 / 60.8 / +
Xanthomonas / KO 561 / S-*-Xanth-0466-a-A-19 / ACCGTCAGAACAATCGGGT / Members of target genus, Stenotrophomonas sp. / 466 / 19 / 61.4 / +
Xanthomonas / KO 204 / S-*-Xanth-0210-a-A-18 / ATTCAATCGCGCGAAGC / X. translucens, X. albilineans, X. melonis, X. sacchari, X. hyacinthi, X. campestris / 210 / 17 / 61.8 / +
Xylella fastidiosa / KO 456 / S-S-Xfas-0213-a-A-19 / GCTCATCCAATCGCACAAG / Target species / 213 / 19 / 61 / nt
Xylella fastidiosa / KO 209 / S-S-XfasB-0834-a-A-19 / GTGCCAATTTGCACTCAAC / Target species / 834 / 19 / 58.3 / nt
Xylella fastidiosa / KO 210 / S-S-XfastC-0078-a-A-21 / GCCACCCATGGTATTACTACC / Target species / 78 / 21 / 61.2 / nt
Xylella, Xanthomonas, Stenotrophomonas / KO 241 / S-*-XXS-1240-a-A-18 / GCAGCCCTCTGTCCCTAC / Target genera / 1240 / 18 / 58.8 / +
Xylella, Xanthomonas, Stenotrophomonas / KO 242 / S-*-XXS-0850-a-A-19 / CGCGTTAGCTTCGATACTG / Target genera / 850 / 19 / 59.2 / +
Yersinia / KO 457 / S-G-Yers-1241-a-A-23 / GAGTTCGCTTCACTTTGTATCTG / Members of target genus / 1241 / 23 / 61.5 / +
Yersinia / KO 458 / S-G-Yers-0072-a-A-23 / GCAAAGTAGTAAACTACTTCCCG / Members of target genus / 72 / 23 / 61 / +w
Yersinia enterocolitica / KO 562 / S-*-Vcol-0996-a-A-20 / TCTCTGCTAAATTCCGTGGA / Target species, several Enterobacteriacae / 996 / 20 / 60.3 / +w
Yersinia enterocolitica / KO 214 / S-*-Yenta-0443-a-A-19 / CCTTTATGCCTTCCTCCTC / Target species, Y. kristensenii / 443 / 19 / 58.4 / +
Yersinia enterocolitica / KO 215 / S-S-Yentb-0443-a-A-19 / GTTATTGGCCTTCCTCCTC / Target species / 443 / 19 / 58.1 / nt
a Name of 16S rRNA gene-targeted oligonucleotide probe based on the nomenclature of Alm et al. (1996); b Probe reference from Amann et al. (1990); c Probe reference from Daims et al. (1999); d Probe reference from Stahl and Amann (1991); e Probe reference from Hogardt et al. (2000); fProbe reference from Barrett et al. (1997). Hybridization with pure culture results: +, positive hybridization, -, no hybridization, nt, not tested, FN, false negative, fp, false positive, +w, weak positive.