Table S3. the Relative Abundance of Mobile Genetic Elements (Mges) During the Whole Composting

Table S3. The relative abundance of mobile genetic elements (MGEs) during the whole composting process in PWS and PWSB

Source / Profile HMM / Annotation / Relative abundance (%)
PWS
Me / PWSB
Me / PWS
Th / PWSB
Th / PWS
Co / PWSB
Co / PWS
Ma / PWSB
Ma
Pfam / PF00078 / Reverse transcriptase (RNA-dependent DNA polymerase) / 0.070 / 0.139 / 0.025 / 0.024 / 0.018 / 0.208 / 0.015 / 0.030
Pfam / PF00589 / Phage integrase family / 0.058 / 0.095 / 0.086 / 0.083 / 0.054 / 0.046 / 0.029 / 0.035
Pfam / PF00665 / Integrase core domain / 0.056 / 0.103 / 0.082 / 0.079 / 0.041 / 0.050 / 0.023 / 0.025
Pfam / PF00872 / Transposase.Mutator family / 0.037 / 0.073 / 0.079 / 0.086 / 0.031 / 0.040 / 0.009 / 0.012
Pfam / PF01076 / Plasmid recombination enzyme / 0.030 / 0.027 / 0.017 / 0.013 / 0.006 / 0.004 / 0.002 / 0.005
Pfam / PF01385 / Probable transposase / 0.015 / 0.013 / 0.071 / 0.068 / 0.013 / 0.017 / 0.005 / 0.003
Pfam / PF01526 / Tn3 transposase DDE domain / 0.001 / 0.002 / 0.002 / 0.003 / 0.002 / 0.008 / 0.005 / 0.006
Pfam / PF01527 / Transposase / 0.019 / 0.030 / 0.057 / 0.057 / 0.032 / 0.030 / 0.017 / 0.018
Pfam / PF01548 / Transposase / 0.019 / 0.037 / 0.050 / 0.048 / 0.026 / 0.042 / 0.007 / 0.011
Pfam / PF01609 / Transposase DDE domain / 0.025 / 0.034 / 0.066 / 0.079 / 0.030 / 0.051 / 0.022 / 0.015
Pfam / PF01610 / Transposase / 0.053 / 0.115 / 0.039 / 0.037 / 0.009 / 0.011 / 0.003 / 0.008
Pfam / PF01797 / Transposase IS200 like / 0.004 / 0.006 / 0.009 / 0.008 / 0.004 / 0.006 / 0.001 / 0.001
Pfam / PF02371 / Transposase IS116/IS110/IS902 family / 0.014 / 0.031 / 0.037 / 0.033 / 0.018 / 0.028 / 0.007 / 0.012
Pfam / PF02534 / Type IV secretory system Conjugative DNA transfer / 0.018 / 0.032 / 0.009 / 0.011 / 0.008 / 0.009 / 0.006 / 0.008
Pfam / PF02604 / Antitoxin Phd_YefM. type II toxin-antitoxin system / 0.007 / 0.007 / 0.022 / 0.024 / 0.005 / 0.007 / 0.006 / 0.007
Pfam / PF02661 / Fic/DOC family / 0.009 / 0.015 / 0.003 / 0.003 / 0.006 / 0.005 / 0.002 / 0.004
Pfam / PF02899 / Phage integrase. N-terminal SAM-like domain / 0.012 / 0.018 / 0.024 / 0.024 / 0.015 / 0.014 / 0.010 / 0.010
Pfam / PF02993 / Minor capsid protein VI / 0.003 / 0.007 / 0.003 / 0.002 / 0.003 / 0.001 / 0.001 / 0.001
Pfam / PF03050 / Transposase IS66 family / 0.027 / 0.052 / 0.008 / 0.009 / 0.012 / 0.010 / 0.005 / 0.005
Pfam / PF03354 / Phage Terminase / 0.003 / 0.004 / 0.004 / 0.003 / 0.004 / 0.006 / 0.001 / 0.002
Pfam / PF03389 / MobA/MobL family / 0.009 / 0.011 / 0.005 / 0.005 / 0.001 / 0.000 / 0.000 / 0.000
Pfam / PF03400 / IS1 transposase / 0.001 / 0.001 / 0.003 / 0.003 / 0.002 / 0.000 / 0.000 / 0.001
Pfam / PF03432 / Relaxase/Mobilisation nuclease domain / 0.039 / 0.036 / 0.001 / 0.002 / 0.001 / 0.002 / 0.002 / 0.002
Pfam / PF04221 / RelB antitoxin / 0.040 / 0.033 / 0.003 / 0.004 / 0.003 / 0.002 / 0.002 / 0.005
Pfam / PF04693 / Archaeal putative transposase ISC1217 / 0.002 / 0.001 / 0.001 / 0.001 / 0.001 / 0.001 / 0.000 / 0.000
Pfam / PF04986 / Putative transposase / 0.002 / 0.001 / 0.001 / 0.000 / 0.003 / 0.002 / 0.000 / 0.000
Pfam / PF05015 / Plasmid maintenance system killer protein / 0.005 / 0.004 / 0.001 / 0.001 / 0.002 / 0.001 / 0.001 / 0.006
Pfam / PF05016 / Plasmid stabilisation system protein / 0.017 / 0.015 / 0.003 / 0.001 / 0.005 / 0.002 / 0.002 / 0.004
Pfam / PF05598 / Transposase domain (DUF772) / 0.011 / 0.011 / 0.044 / 0.043 / 0.011 / 0.014 / 0.002 / 0.002
Pfam / PF05709 / Phage tail protein / 0.001 / 0.002 / 0.005 / 0.003 / 0.005 / 0.008 / 0.001 / 0.001
Pfam / PF05713 / Bacterial mobilisation protein (MobC) / 0.024 / 0.017 / 0.002 / 0.001 / 0.001 / 0.002 / 0.001 / 0.001
Pfam / PF05717 / IS66 Orf2 like protein / 0.008 / 0.020 / 0.012 / 0.009 / 0.003 / 0.004 / 0.002 / 0.001
Pfam / PF06605 / Prophageendopeptidase tail / 0.001 / 0.003 / 0.007 / 0.006 / 0.003 / 0.005 / 0.001 / 0.001
Pfam / PF07022 / Bacteriophage CI repressor helix-turn-helix domain / 0.014 / 0.015 / 0.014 / 0.014 / 0.009 / 0.011 / 0.004 / 0.004
Pfam / PF07275 / Antirestriction protein (ArdA) / 0.001 / 0.001 / 0.001 / 0.001 / 0.001 / 0.001 / 0.000 / 0.000
Pfam / PF07508 / Recombinase / 0.017 / 0.026 / 0.005 / 0.004 / 0.004 / 0.006 / 0.005 / 0.006
Pfam / PF09720 / Putative addiction module component / 0.001 / 0.001 / 0.001 / 0.001 / 0.002 / 0.001 / 0.003 / 0.003
Pfam / PF10412 / Type IV secretion-system coupling protein DNA-binding domain / 0.126 / 0.216 / 0.133 / 0.134 / 0.093 / 0.088 / 0.065 / 0.082
Pfam / PF10551 / MULE transposase domain / 0.000 / 0.001 / 0.002 / 0.002 / 0.001 / 0.003 / 0.004 / 0.001
Pfam / PF12642 / Conjugative transposon protein TcpC / 0.005 / 0.012 / 0.004 / 0.005 / 0.002 / 0.004 / 0.000 / 0.001
Pfam / PF12696 / TraM recognition site of TraD and TraG / 0.003 / 0.004 / 0.001 / 0.002 / 0.003 / 0.005 / 0.013 / 0.015
Pfam / PF12784 / PD-(D/E)XK nuclease family transposase / 0.005 / 0.004 / 0.003 / 0.003 / 0.002 / 0.001 / 0.000 / 0.000
Pfam / PF12835 / Integrase / 0.000 / 0.003 / 0.001 / 0.001 / 0.000 / 0.000 / 0.000 / 0.000
Pfam / PF13011 / leucine-zipper of insertion element IS481 / 0.008 / 0.012 / 0.004 / 0.004 / 0.003 / 0.005 / 0.005 / 0.008
Pfam / PF13333 / Integrase core domain / 0.006 / 0.008 / 0.014 / 0.012 / 0.007 / 0.004 / 0.002 / 0.003
Pfam / PF13340 / Putative transposase of IS4/5 family (DUF4096) / 0.004 / 0.012 / 0.001 / 0.002 / 0.004 / 0.007 / 0.011 / 0.014
Pfam / PF13495 / Phage integrase. N-terminal SAM-like domain / 0.005 / 0.006 / 0.006 / 0.006 / 0.006 / 0.010 / 0.006 / 0.013
Pfam / PF13542 / Helix-turn-helix domain of transposase family ISL3 / 0.066 / 0.123 / 0.099 / 0.127 / 0.083 / 0.117 / 0.076 / 0.065
Pfam / PF13546 / DDE superfamily endonuclease / 0.008 / 0.014 / 0.007 / 0.016 / 0.004 / 0.007 / 0.008 / 0.009
Pfam / PF13586 / Transposase DDE domain / 0.003 / 0.007 / 0.008 / 0.010 / 0.004 / 0.008 / 0.007 / 0.009
Pfam / PF13610 / DDE domain / 0.028 / 0.053 / 0.030 / 0.024 / 0.015 / 0.036 / 0.054 / 0.014
Pfam / PF13612 / Transposase DDE domain / 0.005 / 0.008 / 0.002 / 0.002 / 0.001 / 0.000 / 0.000 / 0.000
Pfam / PF13683 / Integrase core domain / 0.011 / 0.022 / 0.022 / 0.023 / 0.010 / 0.012 / 0.009 / 0.011
Pfam / PF13701 / Transposase DDE domain group 1 / 0.144 / 0.389 / 0.034 / 0.040 / 0.049 / 0.083 / 0.016 / 0.010
Pfam / PF13737 / Transposase DDE domain / 0.000 / 0.000 / 0.002 / 0.001 / 0.000 / 0.000 / 0.000 / 0.000
Pfam / PF13751 / Transposase DDE domain / 0.008 / 0.010 / 0.012 / 0.010 / 0.006 / 0.005 / 0.001 / 0.001
Pfam / PF13808 / DDE_Tnp_1-associated / 0.001 / 0.001 / 0.003 / 0.003 / 0.002 / 0.002 / 0.002 / 0.001
Pfam / PF14198 / Transposon-encoded protein TnpV / 0.003 / 0.004 / 0.002 / 0.002 / 0.001 / 0.001 / 0.001 / 0.001
Pfam / PF14202 / Transposon-encoded protein TnpW / 0.001 / 0.002 / 0.001 / 0.001 / 0.000 / 0.000 / 0.001 / 0.001
Pfam / PF14319 / Transposase zinc-binding domain / 0.007 / 0.010 / 0.009 / 0.008 / 0.010 / 0.005 / 0.003 / 0.004
TIGRFam / TIGR02607 / antidote_HigA: addiction module antidote protein.HigA family / 0.029 / 0.036 / 0.045 / 0.042 / 0.041 / 0.050 / 0.047 / 0.035
TIGRFam / TIGR01665 / put_anti_recept: phage minor structural protein. N-terminal region / 0.002 / 0.002 / 0.005 / 0.004 / 0.004 / 0.004 / 0.001 / 0.001
TIGRFam / TIGR02384 / RelB_DinJ: addiction module antitoxin.RelB/DinJ family / 0.042 / 0.033 / 0.003 / 0.003 / 0.003 / 0.002 / 0.002 / 0.002
TIGRFam / TIGR02249 / integrase_gron: integronintegrase / 0.039 / 0.061 / 0.081 / 0.080 / 0.038 / 0.034 / 0.018 / 0.018
TIGRFam / TIGR02385 / RelE_StbE: addiction module toxin.RelE/StbE family / 0.025 / 0.026 / 0.005 / 0.004 / 0.004 / 0.001 / 0.000 / 0.001

Note: “Me”, “Th”, “Co”, and “Ma” respresent the mesophilic, thermophilic, cooling and maturing phase, respectively.

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