Table S3: Details of USA300 MRSAisolates analyzed in this study

Isolate ID / City / Isolate sourcea / Visit / Household / Spa / mecA / sccmec / pvl / ST
12222 / Chicago / I / Infection / 9002 / + / + / IV / + / 8
9002022 R-1 / Chicago / BC / Baseline / 9002 / + / + / IV / + / 8
9002038 R-1 / Chicago / BC / Baseline / 9002 / + / + / IV / + / 8
9002040 R-1 / Chicago / BC / Baseline / 9002 / + / + / IV / + / 8
9002339 R-1 / Chicago / BC / 3-Month / 9002 / + / + / IV / + / 8
9002340 R-1 / Chicago / BC / 3-Month / 9002 / + / + / IV / + / 8
9002622 R-1 / Chicago / BC / 6-Month / 9002 / + / + / IV / + / 8
9002624 R-1 / Chicago / BC / 6-Month / 9002 / + / + / IV / + / 8
9002628 R-1 / Chicago / BC / 6-Month / 9002 / + / + / IV / + / 8
9002630 R-1 / Chicago / BC / 6-Month / 9002 / + / + / IV / + / 8
9002631 R-1 / Chicago / BC / 6-Month / 9002 / + / + / IV / + / 8
9002640 R-1 / Chicago / BC / 6-Month / 9002 / + / + / IV / + / 8
12490 / Chicago / I / Infection / 9011 / + / + / IV / + / 8
9011032 R-1 / Chicago / BC / Baseline / 9011 / + / + / IV / + / 8
9011033 R-1 / Chicago / BC / Baseline / 9011 / + / + / IV / + / 8
9011035 R-1 / Chicago / BC / Baseline / 9011 / + / + / IV / + / 8
9011321 R-1 / Chicago / BC / 3-Month / 9011 / + / + / IV / + / 8
9011322 R-1 / Chicago / BC / 3-Month / 9011 / + / + / IV / + / 8
9011335 R-1 / Chicago / BC / 3-Month / 9011 / + / + / IV / + / 8
9011336 R-1 / Chicago / BC / 3-Month / 9011 / + / + / IV / + / 8
9011621 S-1 / Chicago / BC / 6-Month / 9011 / + / + / IV / + / 8
12499 / Chicago / I / Infection / 9012 / + / + / IV / + / 8
9012030 R-1 / Chicago / BC / Baseline / 9012 / + / + / IV / + / 8
9012031 R-1 / Chicago / BC / Baseline / 9012 / + / + / IV / + / 8
9012034 R-1 / Chicago / BC / Baseline / 9012 / + / + / IV / + / 8
9012334 R-1 / Chicago / BC / 3-Month / 9012 / + / + / IV / + / 8
13304 / Chicago / I / Infection / 9032 / + / + / IV / + / 8
9032025 R-1 / Chicago / BC / Baseline / 9032 / + / + / IV / + / 8
9032031 R-1 / Chicago / BC / Baseline / 9032 / + / + / IV / + / 8
9032320 S-1 / Chicago / BC / 3-Month / 9032 / + / + / IV / + / 8
9032620 S-1 / Chicago / BC / 6-Month / 9032 / + / + / IV / + / 8
9032634 S-1 / Chicago / BC / 6-Month / 9032 / + / + / IV / + / 8
13324 / Chicago / I / Infection / 9033 / + / + / IV / + / 8
9033021 R-1 / Chicago / BC / Baseline / 9033 / + / + / IV / + / 8
9033025 R-1 / Chicago / BC / Baseline / 9033 / + / + / IV / + / 8
9033031 R-1 / Chicago / BC / Baseline / 9033 / + / + / IV / + / 8
9033331 S-1 / Chicago / BC / 3-Month / 9033 / + / + / IV / + / 8
9033620 S-1 / Chicago / BC / 6-Month / 9033 / + / + / IV / + / 8
9033621 S-1 / Chicago / BC / 6-Month / 9033 / + / + / IV / + / 8
9033622 S-1 / Chicago / BC / 6-Month / 9033 / + / + / IV / + / 8
9033624 S-1 / Chicago / BC / 6-Month / 9033 / + / + / IV / + / 8
9033629 S-1 / Chicago / BC / 6-Month / 9033 / + / + / IV / + / 8
9033630 S-1 / Chicago / BC / 6-Month / 9033 / + / + / IV / + / 8
9033631 S-1 / Chicago / BC / 6-Month / 9033 / + / + / IV / + / 8
9033632 S-1 / Chicago / BC / 6-Month / 9033 / + / + / IV / + / 8
14891 / Chicago / I / Infection / 9101 / + / + / IV / + / 8
9101026 S-1 / Chicago / BC / Baseline / 9101 / + / + / IV / + / 8
9101030 S-1 / Chicago / BC / Baseline / 9101 / + / + / IV / + / 8
9101036 S-1 / Chicago / BC / Baseline / 9101 / + / + / IV / + / 8
9101328 S-1 / Chicago / BC / 3-Month / 9101 / + / + / IV / + / 8
9101620 S-1 / Chicago / BC / 6-Month / 9101 / + / + / IV / + / 8
9101626 S-1 / Chicago / BC / 6-Month / 9101 / + / + / IV / + / 8
9101627 S-1 / Chicago / BC / 6-Month / 9101 / + / + / IV / + / 8
9101628 S-1 / Chicago / BC / 6-Month / 9101 / + / + / IV / + / 8
15384 / Chicago / I / Infection / 9131 / + / + / IV / + / 8
9131023 S-1 / Chicago / BC / Baseline / 9131 / + / + / IV / + / 8
9131024 S-1 / Chicago / BC / Baseline / 9131 / + / + / IV / + / 8
9131025 S-1 / Chicago / BC / Baseline / 9131 / + / + / IV / + / 8
9131322 S-1 / Chicago / BC / 3-Month / 9131 / + / + / IV / + / 8
15939 / Chicago / I / Infection / 9141 / + / + / IV / + / 8
9141020 S-1 / Chicago / BC / Baseline / 9141 / + / + / IV / + / 8
9141021 S-1 / Chicago / BC / Baseline / 9141 / + / + / IV / + / 8
9141023 S-1 / Chicago / BC / Baseline / 9141 / + / + / IV / + / 8
9141328 S-1 / Chicago / BC / 3-Month / 9141 / + / + / IV / + / 8
16391 / Chicago / I / Infection / 9150 / + / + / IV / + / 8
9150020 S-1 / Chicago / BC / Baseline / 9150 / + / + / IV / + / 8
9150021 S-1 / Chicago / BC / Baseline / 9150 / + / + / IV / + / 8
9150022 S-1 / Chicago / BC / Baseline / 9150 / + / + / IV / + / 8
9150023 S-1 / Chicago / BC / Baseline / 9150 / + / + / IV / + / 8
9150024 S-1 / Chicago / BC / Baseline / 9150 / + / + / IV / + / 8
9150320 S-1 / Chicago / BC / 3-Month / 9150 / + / + / IV / + / 8
9150321 S-1 / Chicago / BC / 3-Month / 9150 / + / + / IV / + / 8
9150323 S-1 / Chicago / BC / 3-Month / 9150 / + / + / IV / + / 8
9150324 S-1 / Chicago / BC / 3-Month / 9150 / + / + / IV / + / 8
9150327 S-1 / Chicago / BC / 3-Month / 9150 / + / + / IV / + / 8
8010-01 / Los Angeles / I / Infection / 8010 / + / + / IV / + / 8
8010031 R-1 / Los Angeles / BC / Baseline / 8010 / + / + / IV / + / 8
8010033 R-1 / Los Angeles / BC / Baseline / 8010 / + / + / IV / + / 8
8010325 R-1 / Los Angeles / BC / 3-Month / 8010 / + / + / IV / + / 8
8010331 R-1 / Los Angeles / BC / 3-Month / 8010 / + / + / IV / + / 8
8010334 R-1 / Los Angeles / BC / 3-Month / 8010 / + / + / IV / + / 8
8010633 S-1 / Los Angeles / BC / 6-Month / 8010 / + / + / IV / + / 8
8012027 R-1 / Los Angeles / BC / Baseline / 8012 / + / + / IV / + / 8
8012028 R-1 / Los Angeles / BC / Baseline / 8012 / + / + / IV / + / 8
8012320 R-1 / Los Angeles / BC / 3-Month / 8012 / + / + / IV / + / 8
8012321 R-1 / Los Angeles / BC / 3-Month / 8012 / + / + / IV / + / 8
8012326 R-1 / Los Angeles / BC / 3-Month / 8012 / + / + / IV / + / 8
8012327 R-1 / Los Angeles / BC / 3-Month / 8012 / + / + / IV / + / 8
8012328 R-1 / Los Angeles / BC / 3-Month / 8012 / + / + / IV / + / 8
8012620 S-1 / Los Angeles / BC / 6-Month / 8012 / + / + / IV / + / 8
8012627 S-1 / Los Angeles / BC / 6-Month / 8012 / + / + / IV / + / 8
8012628 S-1 / Los Angeles / BC / 6-Month / 8012 / + / + / IV / + / 8
8012-01 / Los Angeles / I / Infection / 8012 / + / + / IV / + / 8
8013-01 / Los Angeles / I / Infection / 8013 / + / + / IV / + / 8
8013020 R-1 / Los Angeles / BC / Baseline / 8013 / + / + / IV / + / 8
8013023 R-1 / Los Angeles / BC / Baseline / 8013 / + / + / IV / + / 8
8035-01 / Los Angeles / I / Infection / 8035 / + / + / IV / + / 8
8035020 R-1 / Los Angeles / BC / Baseline / 8035 / + / + / IV / + / 8
8035028 R-1 / Los Angeles / BC / Baseline / 8035 / + / + / IV / + / 8
8035029 R-1 / Los Angeles / BC / Baseline / 8035 / + / + / IV / + / 8
8035030 R-1 / Los Angeles / BC / Baseline / 8035 / + / + / IV / + / 8
8035326 S-1 / Los Angeles / BC / 3-Month / 8035 / + / + / IV / + / 8
8035620 S-1 / Los Angeles / BC / 6-Month / 8035 / + / + / IV / + / 8
8035629 S-1 / Los Angeles / BC / 6-Month / 8035 / + / + / IV / + / 8
8036021 R-1 / Los Angeles / BC / Baseline / 8036 / + / + / IV / + / 8
8036025 R-1 / Los Angeles / BC / Baseline / 8036 / + / + / IV / + / 8
8036621 S-1 / Los Angeles / BC / 6-Month / 8036 / + / + / IV / + / 8
8056-01 / Los Angeles / I / Infection / 8056 / + / + / IV / + / 8
8056020 R-1 / Los Angeles / BC / Baseline / 8056 / + / + / IV / + / 8
8056022 R-1 / Los Angeles / BC / Baseline / 8056 / + / + / IV / + / 8
8113-01 / Los Angeles / I / Infection / 8113 / + / + / IV / + / 8
8113022 S-1 / Los Angeles / BC / Baseline / 8113 / + / + / IV / + / 8
8113024 S-1 / Los Angeles / BC / Baseline / 8113 / + / + / IV / + / 8
8113031 S-1 / Los Angeles / BC / Baseline / 8113 / + / + / IV / + / 8
8113320 S-1 / Los Angeles / BC / 3-Month / 8113 / + / + / IV / + / 8
8113331 S-1 / Los Angeles / BC / 3-Month / 8113 / + / + / IV / + / 8
8113621 S-1 / Los Angeles / BC / 6-Month / 8113 / + / + / IV / + / 8
8113624 S-1 / Los Angeles / BC / 6-Month / 8113 / + / + / IV / + / 8
8174-01 / Los Angeles / I / Infection / 8174 / + / + / IV / + / 8
8174020 S-1 / Los Angeles / BC / Baseline / 8174 / + / + / IV / + / 8
8174021 S-1 / Los Angeles / BC / Baseline / 8174 / + / + / IV / + / 8
8174320 S-1 / Los Angeles / BC / 3-Month / 8174 / + / + / IV / + / 8
8174321 S-1 / Los Angeles / BC / 3-Month / 8174 / + / + / IV / + / 8
8182-01 / Los Angeles / I / Infection / 8182 / + / + / IV / + / 8
8182025 S-1 / Los Angeles / BC / Baseline / 8182 / + / + / IV / + / 8
8182030 S-1 / Los Angeles / BC / Baseline / 8182 / + / + / IV / + / 8
8182320 S-1 / Los Angeles / BC / 3-Month / 8182 / + / + / IV / + / 8
8182322 S-1 / Los Angeles / BC / 3-Month / 8182 / + / + / IV / + / 8
8182620 S-1 / Los Angeles / BC / 6-Month / 8182 / + / + / IV / + / 8
8203-01 / Los Angeles / I / Infection / 8203 / + / + / IV / + / 8
8203020 S-1 / Los Angeles / BC / Baseline / 8203 / + / + / IV / + / 8
8203022 S-1 / Los Angeles / BC / Baseline / 8203 / + / + / IV / + / 8
8203024 S-1 / Los Angeles / BC / Baseline / 8203 / + / + / IV / + / 8
8203320 S-1 / Los Angeles / BC / 3-Month / 8203 / + / + / IV / + / 8
8203620 S-1 / Los Angeles / BC / 6-Month / 8203 / + / + / IV / + / 8
8203623 S-1 / Los Angeles / BC / 6-Month / 8203 / + / + / IV / + / 8
8203624 S-1 / Los Angeles / BC / 6-Month / 8203 / + / + / IV / + / 8
8203632 S-1 / Los Angeles / BC / 6-Month / 8203 / + / + / IV / + / 8
8211-01 / Los Angeles / I / Infection / 8211 / + / + / IV / + / 8
8211021 S-1 / Los Angeles / BC / Baseline / 8211 / + / + / IV / + / 8
8211022 S-1 / Los Angeles / BC / Baseline / 8211 / + / + / IV / + / 8
8211023 S-1 / Los Angeles / BC / Baseline / 8211 / + / + / IV / + / 8
8211024 S-1 / Los Angeles / BC / Baseline / 8211 / + / + / IV / + / 8
8211026 S-1 / Los Angeles / BC / Baseline / 8211 / + / + / IV / + / 8
8211621 S-1 / Los Angeles / BC / 6-Month / 8211 / + / + / IV / + / 8
8217021 S-1 / Los Angeles / BC / Baseline / 8217 / + / + / IV / + / 8

aI, Index infection isolate; BC, Body colonization isolate