Table S3List of Transcription Factors genes up-regulated after 3 hours of chitosan treatment

Category / Gene ID / Gene Name / Description / GO Biological funtion / Response to chitin (Libault et al., 2007) / Induction (Fold Change)
bHLH / At1g10585 / Transcription factor activity / Regulation of transcription / 211.22
At5g04150 / BHLH101 / Transcription factor activity / Regulation of transcription / 34.56
At3g56980 / BHLH039 / Transcription factor activity / Regulation of transcription / 6.01
At1g32640 / JIN1/MYC2 / Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif / Regulation of transcription. Response to wounding, jasmonic acid mediated signaling pathway. Defense response to insects. response to abscisic acid stimulus. Tryptophan metabolic process, indole glucosinolate biosynthetic process / X / 4.75
At3g47640 / F1P2.190 / Basic helix-loop-helix (bHLH) family protein Transcription factor activity / Regulation of transcription / 4.45
ERF/AP2 / At5g47220 / ERF2 / Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-2) / Regulation of transcription, DNA-dependent, induced systemic resistance, jasmonic acid mediated signaling pathway, ethylene mediated signaling pathway / X / 23.94
At1g43160 / RAP2.6 / Encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family (RAP2.6) / Response to wounding, regulation of transcription, DNA-dependent / 23.07
At5g13330 / RAP2.6L / Encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family / Regulation of transcription / 11.45
At1g06160 / AP2/ERF59 / Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family / Regulation of transcription, DNA-dependent, jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway, response to ethylene stimulus, response to jasmonic acid stimulus / 11.44
At2g33710 / T1B8.3 / Encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family / Regulation of transcription / X / 9.34
At4g17500 / ERF-1 / Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-1) / Regulation of transcription / X / 8.94
At3g50260 / CEJ1 / Encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family / Regulation of transcription / X / 6.10
At4g39780 / T19P19.170 / Encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family / Regulation of transcription / 5.98
At3g15210 / ERF4 / Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-4) / Regulation of transcription, DNA-dependent, induced systemic resistance, jasmonic acid mediated signaling pathway, response to abscisic acid stimulus, response to ethylene stimulus, negative regulation of ethylene mediated signaling pathway / X / 2.94
At5g61600 / ERF104 / Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family / Regulation of transcription, DNA-dependent, defense response to fungus / 2.78
MYB / At3g23250 / MYB15 / Member of the R2R3 factor gene family / Response to salt stress, regulation of transcription, DNA-dependent, response to auxin stimulus, response to ethylene stimulus, response to jasmonic acid stimulus, response to cadmium ion / X / 29.59
At1g74080 / MYB122 / Encodes a putative transcription factor, member of the R2R3 factor gene family / Regulation of transcription / 10.48
At1g74650 / MYB31 / Member of the R2R3 factor gene family / Regulation of transcription, DNA-dependent, response to gibberellin stimulus, response to salicylic acid stimulus / X / 4.34
At1g18570 / MYB51 / Encodes a member of the R2R3-MYB transcription family. Involved in indole glucosinolate biosynthesis / Response to salt stress, regulation of transcription, DNA-dependent, response to abscisic acid stimulus, response to auxin stimulus, response to ethylene stimulus, response to gibberellin stimulus, response to jasmonic acid stimulus, response to salicylic acid stimulus, indole glucosinolate biosynthetic process, defense response to bacterium, callose deposition in cell wall during defense response / 4.02
At1g56650 / MYB75 / Encodes a putative MYB domain containing transcription factor involved in anthocyanin metabolism and radical scavenging. Essential for the sucrose-mediated expression of the dihydroflavonol reductase gene / Response to salt stress, regulation of transcription, DNA-dependent, removal of superoxide radicals, anthocyanin biosynthetic process, sucrose mediated signaling, response to jasmonic acid stimulus, anthocyanin metabolic process, regulation of anthocyanin biosynthetic process / 3.83
NAC / At1g52890 / ANAC019 / Encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro / Multicellular organismal development, response to water deprivation / 68.97
At2g43000 / ANAC042 / Arabidopsis NAC domain containing protein 42 (anac042) / Multicellular organismal development / 34.55
At3g15500 / ANAC055 / Encodes an ATAF-like NAC-domain transcription factor that doesn't contain C-terminal sequences shared by CUC1, CUC2 and NAM / Multicellular organismal development, response to water deprivation, jasmonic acid mediated signaling pathway / 18.13
At1g69490 / ANAC029 / Encodes a member of the NAC transcription factor gene family. It is expressed in floral primordia and upregulated by AP3 and PI. Its expression is associated with leaf senescence / Multicellular organism development, multidimensional cell growth, flower development, leaf senescence / 18.10
At4g27410 / ANAC072/RD26 / Encodes a NAC transcription factor induced in response to dessication. It is localized to the nucleus and acts as a transcriptional activator in ABA-mediated dehydration response / Multicellular organismal development, response to water deprivation, response to abscisic acid stimulus / 17.22
At5g39610 / ANAC092 / Encodes a NAC-domain transcription factor. Positively regulates aging-induced cell death and senescence in leaves / Multicellular organismal development, response to oxidative stress, senescence, leaf senescence / 11.06
At1g34180 / ANAC016 / Arabidopsis NAC domain containing protein 16 (anac016) / Multicellular organism development / X / 9.83
At5g46590 / ANAC096 / Arabidopsis NAC domain containing protein 96 (anac096) / Multicellular organism development / 3.73
WRKY / At5g13080 / WRKY75 / It is one of several transcription factors induced during Pi deprivation. It is nuclear localized and regulated differentially during Pi starvation / Regulation of transcription, DNA-dependent, lateral root development, regulation of transcription in response to stress, regulation of response to nutrient levels / 60.88
At3g01970 / WRKY45 / Member of WRKY Transcription Factor; Group I / Regulation of transcription / 52.10
At2g46400 / WRKY46 / Member of WRKY Transcription Factor; Group III / Regulation of transcription / X / 34.00
At5g46350 / WRKY8 / Member of WRKY Transcription Factor; Group II-c / Regulation of transcription / 20.40
At1g80840 / WRKY40 / Pathogen-induced transcription factor. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea / Response to wounding, regulation of transcription, DNA-dependent, response to salicylic acid stimulus, defense response to bacterium, regulation of defense response to virus by host, response to chitin, defense response to fungus, regulation of defense response / X / 9.77
At5g49520 / WRKY48 / Member of WRKY Transcription Factor; Group II-c / Regulation of transcription / X / 9.45
At1g62300 / WRKY6 / Transcription factor WRKY6 (WRKY6) / Regulation of transcription / X / 3.21
At4g31800 / WRKY18 / Pathogen-induced transcription factor. Forms protein complexes with itself and with WRKY40 and WRKY60. Constitutive expression of WRKY18 enhanced resistance to P. syringae, but its coexpression with WRKY40 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea / Regulation of transcription, DNA-dependent, response to salicylic acid stimulus, defense response to bacterium, regulation of defense response to virus by host, defense response to fungus, regulation of defense response / X / 2.38
Zinc Finger / At3g53600 / F4P12.300 / Zinc finger (C2H2 type) family protein / Regulation of transcription / X / 20.03
At5g04340 / CZF2 / Putative C2H2 zinc finger transcription factor mRNA / 9.48
At3g28210 / PMZ/ T19D11.2 / Encodes a putative zinc finger protein (PMZ) / Response to abscisic acid stimulus / X / 8.08
At3g18290 / EMB2454 / Embryo defective 2454 (EMB2454) / Embryonic development ending in seed dormancy / 4.66
At2g37430 / F3G5.22/ZAT11 / Zinc finger (C2H2 type) family protein (ZAT11) / Regulation of transcription / X / 3.2
At2g40140 / CZF1/SZF2 / Transcription factor activity / Response to cold, regulation of transcription, defense response to fungus / X / 2.59
Others / At2g38250 / F16M14.18 / DNA-binding protein-related / Regulation of transcription / 8.05
At3g11840 / PUB24 / Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity / Respiratory burst during defense response. Protein autoubiquitination / X / 8.25
At3g52450 / PUB22 / Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity / Defense response, response to water deprivation, protein ubiquitination, protein autoubiquitination, respiratory burst during defense response / X / 6.24
At3g02150 / PTF1 / A chloroplast trans-acting factor of the psbD light-responsive promoter.TCP gene involved in heterochronic control of leaf differentiation / Cell differentiation, regulation of transcription, positive regulation of development, heterochronic, leaf morphogenesis / 6.2
At2g35930 / PUB23 / Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity / Defense response, response to water deprivation, protein ubiquitination,protein autoubiquitination, respiratory burst during defense response / X / 3.99
At4g37790 / HAT22 / Encodes homeobox protein HAT22, member of the HD-Zip II family / Regulation of transcription. Response to cytokinin stimulus / 3.19
At5g09800 / F17I14.10 / U-box domain-containing protein / Ubiquitin ligase complex / X / 3.06