Table S1 List of Thepassequences Used in the Study

Table S1 List of thePASsequences used in the study

Groups / Species and taxa / Length (bp) / GenBank nucleotide sequence accession number / GenBank protein sequence accession number / Designation of sequence in figure / Lengend
Vertebrates (Animal) / Placental Mammals / Ailuropoda melanoleuca / 1878 / XM_002926111 / XP_002926157 / Ailu_b1 / VertebrateBMAL1
2079 / XM_002917116 / XP_002917162 / Ailu_b2 / VertebrateBMAL2
2538 / XM_002919367 / XP_002919413 / Ailu_Clk / Vertebrate CLK
2457 / XM_002919189 / XP_002919235 / Ailu_N2 / Vertebrate NPAS2
3804 / XM_002930230 / XP_002930276 / Ailu_P2 / Vertebrate PER2
Bos taurus / 1881 / XM_002693049 / XP_002693095 / Bos_b1 / Vertebrate BMAL1
2115 / XM_002687728 / XP_002687774 / Bos_b2 / Vertebrate BMAL2
2538 / XM_002688257 / XP_002688303 / Bos_Clk / Vertebrate CLK
1527 / XM_003584711 / XP_003584759 / Bos_Clkb / VertebrateCLK
2415 / NM_001083763 / NP_001077232 / Bos_N2 / VertebrateNPAS2
3855 / XM_594471 / XP_594471 / Bos_P1 / VertebratePER1
3876 / NM_001192317 / NP_001179246 / Bos_P2 / Vertebrate PER2
3222 / XM_002694066 / XP_002694112 / Bos_P3 / Vertebrate PER3
Callithrix jacchus / 1881 / XM_002755062 / XP_002755108 / Call_b1 / VertebrateBMAL1
2121 / XM_002749199 / XP_002749245 / Call_b2 / VertebrateBMAL2
2553 / XM_002745822 / XP_002745868 / Call_Clk / VertebrateCLK
2475 / XM_002757430 / XP_002757476 / Call_N2 / VertebrateNPAS2
3996 / XM_002747962 / XP_002748008 / Call_P1 / Vertebrate PER1
3675 / XM_002750263 / XP_002750309 / Call_P3 / Vertebrate PER3
Canis lupus familiaris / 1881 / XM_846757 / XP_851850 / Cani_b1 / VertebrateBMAL1
3201 / XM_543750 / XP_543750 / Cani_b2 / VertebrateBMAL2
2541 / XM_532376 / XP_532376 / Cani_Clk / VertebrateCLK
2637 / XM_531781 / XP_531781 / Cani_N2 / VertebrateNPAS2
3885 / XM_546606 / XP_546606 / Cani_P1 / Vertebrate PER1
3798 / XM_543306 / XP_543306 / Cani_P2 / Vertebrate PER2
3384 / XM_845224 / XP_850317 / Cani_P3 / Vertebrate PER3
Equus caballus / 1881 / NM_001081921 / NP_001075390 / Equu_b1 / VertebrateBMAL1
2043 / XM_001916365 / XP_001916400 / Equu_b2 / VertebrateBMAL2
2541 / XM_001492789 / XP_001492839 / Equu_Clk / VertebrateCLK
2628 / XM_001914983 / XP_001915018 / Equu_N2 / VertebrateNPAS2
3867 / XM_001503185 / XP_001503235 / Equu_P1 / Vertebrate PER1
3777 / XM_001496867 / XP_001496917 / Equu_P2 / Vertebrate PER2
Homo sapiens / 1878 / NM_001030272 / NP_001025443 / Homo_b1 / Vertebrate BMAL1
1911 / NM_020183 / NP_064568 / Homo_b2 / Vertebrate BMAL2
2541 / NM_004898 / NP_004889 / Homo_Clk / VertebrateCLK
2475 / NM_002518 / NP_002509 / Homo_N2 / Vertebrate NPAS2
3873 / NM_002616 / NP_002607 / Homo_P1 / Vertebrate PER1
3768 / NM_022817 / NP_073728 / Homo_P2 / Vertebrate PER2
3606 / NM_016831 / NP_058515 / Homo_P3 / Vertebrate PER3
3252 / NM_012284 / NP_036416 / HomoPC / Potassium channel
Macaca mulatta / 1881 / XM_002799629 / XP_002799675 / Maca_b1 / VertebrateBMAL1
1911 / XM_002798502 / XP_002798548 / Maca_b2 / VertebrateBMAL2
2472 / XM_002804105 / XP_002804151 / Maca_Clk / VertebrateCLK
3879 / XM_001118146 / XP_001118146 / Maca_P1 / Vertebrate PER1
3801 / XM_001086845 / XP_001086845 / Maca_P2 / Vertebrate PER2
3576 / XM_002802160 / XP_002802206 / Maca_P3 / Vertebrate PER3
Mus musculus / 1881 / NM_007489 / NP_031515 / Mus_b1 / VertebrateBMAL1
1710 / DQ322241 / ABC50103 / Mus_b2 / VertebrateBMAL2
2568 / NM_007715 / NP_031741 / Mus_Clk / VertebrateCLK
2451 / NM_008719 / NP_032745 / Mus_N2 / VertebrateNPAS2
3876 / NM_011065 / NP_035195 / Mus_P1 / Vertebrate PER1
3774 / NM_011066 / NP_035196 / Mus_P2 / Vertebrate PER2
3342 / NM_011067 / NP_035197 / Mus_P3 / Vertebrate PER3
Oryctolagus cuniculus / 2562 / XM_002717167 / XP_002717213 / Oryc_Clk / VertebrateCLK
2547 / XM_002710013 / XP_002710059 / Oryc_N2 / VertebrateNPAS2
Pongo abelii / 1878 / NM_001133428 / NP_001126900 / Pong_b1 / VertebrateBMAL1
1869 / XM_002823057 / XP_002823103 / Pong_b2 / VertebrateBMAL2
2541 / NM_001132234 / NP_001125706 / Pong_Clk / VertebrateCLK
2670 / XM_002811698 / XP_002811744 / Pong_N2 / VertebrateNPAS2
3333 / XM_002827009 / XP_002827055 / Pong_P1 / Vertebrate PER1
3696 / XM_002813046 / XP_002813092 / Pong_P2 / Vertebrate PER2
4137 / XM_002811556 / XP_002811602 / Pong_P3 / Vertebrate PER3
Rattus norvegicus / 1881 / NM_024362 / NP_077338 / Ratt_b1 / VertebrateBMAL1
1713 / NM_133391 / NP_596882 / Ratt_b2 / VertebrateBMAL2
2589 / NM_021856 / NP_068628 / Ratt_Clk / VertebrateCLK
3882 / NM_001034125 / NP_001029297 / Ratt_P1 / Vertebrate PER1
3774 / NM_031678 / NP_113866 / Ratt_P2 / Vertebrate PER2
3348 / NM_023978 / NP_076468 / Ratt_P3 / Vertebrate PER3
Monotreme / Ornithorhynchus anatinus / 3489 / XM_002718983 / XP_002719029 / Orni_P1 / Vertebrate PER1
2036 / XM_001518100 / XP_001518150 / Orni_P1b / Vertebrate PER1
3969 / XM_001506274 / XP_001506324 / Orni_P2 / Vertebrate PER2
2493 / XM_001507120 / XP_001507170 / Orni_Clk / VertebrateCLK
4110 / XM_001512943 / XP_001512993 / Orni_N2 / VertebrateNPAS2
2113 / XM_001507633 / XP_001507683 / Orni_N2b / VertebrateNPAS2
Marsupial / Monodelphis domestica / 1881 / XM_001367668 / XP_001367705 / Mono_b1 / VertebrateBMAL1
2577 / XM_001370674 / XP_001370711 / Mono_Clk / VertebrateCLK
2517 / XM_001369635 / XP_001369672 / Mono_N2 / VertebrateNPAS2
3780 / XM_001368769 / XP_001368806 / Mono_P1 / Vertebrate PER1
3972 / XM_001377503 / XP_001377540 / Mono_P3 / Vertebrate PER3
Amphibian / Xenopus (Silurana) tropicalis / 1419 / XM_002936742 / XP_002936788 / Xeno_b1 / VertebrateBMAL1
1809 / XM_003221479 / XP_003221527 / Xeno_b2 / VertebrateBMAL2
1785 / NM_001102828 / NP_001096298 / Xeno_b / VertebrateBMAL2
2490 / NM_001128655 / NP_001122127 / Xeno_Clk / VertebrateCLK
2262 / XM_002934545 / XP_002934591 / Xeno_N2 / VertebrateNPAS2
3711 / NM_001197229 / NP_001184158 / Xeno_P1 / Vertebrate PER1
2772 / NM_001127410 / NP_001120882 / Xeno_P2 / Vertebrate PER2
3810 / NM_001079228 / NP_001072696 / Xeno_P3 / Vertebrate PER3
Reptile / Anolis carolinensis / 1809 / XM_003221479 / XP_003221527 / Anol_b2 / Vertebrate BMAL2
2751 / XM_003221576 / XP_003221624 / Anol_Clk / VertebrateCLK
4005 / XM_003218334 / XP_003218382 / Anol_P2 / Vertebrate PER2
Fish / Danio rerio / 1881 / NM_131577 / NP_571652 / Dani_b1a / Vertebrate BMAL1
1869 / NM_178300 / NP_840085 / Dani_b1b / Vertebrate BMAL1
1728 / NM_131578 / NP_571653 / Dani_b2 / Vertebrate BMAL2
2682 / NM_130957 / NP_571032 / Dani_Clk / VertebrateCLK
2442 / NM_178295 / NP_840080 / Dani_Clkb / VertebrateCLK
2538 / NM_178299 / NP_840084 / Dani_N2 / VertebrateNPAS2
3690 / NM_001030183 / NP_001025354 / Dani_P1a / Vertebrate PER1
4197 / NM_212439 / NP_997604 / Dani_P1b / Vertebrate PER1
4215 / NM_182857 / NP_878277 / Dani_P2 / Vertebrate PER2
3846 / NM_131584 / NP_571659 / Dani_P3 / Vertebrate PER3
Oreochromis niloticus / 1863 / XM_003439421 / XP_003439469 / Oreo_b1 / Vertebrate BMAL1
1863 / XM_003440515 / XP_003440563 / Oreo_b2 / Vertebrate BMAL2
2664 / XM_003452133 / XP_003452181 / Oreo_Clk / Vertebrate CLK
2616 / XM_003439934 / XP_003439982 / Oreo_Clkb / VertebrateCLK
2949 / XM_003456830 / XP_003456878 / Oreo_N2 / VertebrateNPAS2
4329 / XM_003449364 / XP_003449412 / Oreo_P1 / Vertebrate PER1
4335 / XM_003459519 / XP_003459567 / Oreo_P2 / Vertebrate PER2
3816 / XM_003441521 / XP_003441569 / Oreo_P3 / Vertebrate PER3
Bird / Gallus gallus / 1902 / NM_001001463 / NP_001001463 / Gall_b1 / Vertebrate BMAL1
1869 / NM_204133 / NP_989464 / Gall_b2 / Vertebrate BMAL2
2628 / NM_204174 / NP_989505 / Gall_Clk / VertebrateCLK
2448 / NM_001030542 / NP_001025713 / Gall_N2 / VertebrateNPAS2
3075 / XM_420353 / XP_420353 / Gall_N2b / VertebrateNPAS2
4035 / NM_204262 / NP_989593 / Gall_P2 / Vertebrate PER2
3414 / XM_417528 / XP_417528 / Gall_P3 / Vertebrate PER3
Meleagris gallopavo / 1902 / XM_003206205 / XP_003206253 / Mele_b1 / Vertebrate BMAL1
1815 / XM_003202502 / XP_003202550 / Mele_b2 / Vertebrate BMAL2
2553 / XM_003205808 / XP_003205856 / Mele_Clk / VertebrateCLK
2436 / XM_003203152 / XP_003203200 / Mele_N2 / VertebrateNPAS2
2067 / XM_003208486 / XP_003208534 / Mele_N2b / VertebrateNPAS2
3576 / XM_003209027 / XP_003209075 / Mele_P2 / Vertebrate PER2
3399 / XM_003212188 / XP_003212236 / Mele_P3 / Vertebrate PER3
Taeniopygia guttata / 1878 / XM_002187623 / XP_002187659 / Taen_b1 / Vertebrate BMAL1
1878 / XM_002194277 / XP_002194313 / Taen_b2 / Vertebrate BMAL2
2526 / XM_002195584 / XP_002195620 / Taen_Clk / VertebrateCLK
2436 / XM_002193854 / XP_002193890 / Taen_N2 / VertebrateNPAS2
2793 / XM_002193264 / XP_002193300 / Taen_N2b / VertebrateNPAS2
4236 / XM_002188397 / XP_002188433 / Taen_P2 / Vertebrate PER2
3300 / XM_002191974 / XP_002192010 / Taen_P3 / Vertebrate PER3
Cephalochordate (Animal) / Branchiostoma floridae / 4482 / XM_002614049 / XP_002614095 / Bran_P / Animal PER
Enteropneusta (Animal) / Saccoglossus kowalevskii / 1959 / NM_001165016 / NP_001158488 / Sacc_b / Animal BMAL/CYC
Echinoderm(Animal) / Strongylocentrotus purpuratu / 1114 / XM_001197426 / XP_791998 / Stro_b / Animal BMAL/CYC
957 / XM_776528 / XP_781621 / Stro_Clk / Animal CLK
Arthropods (Animal) / Insects / Acyrthosiphon pisum / 1947 / NM_001171103 / NP_001164574 / Acyr_Cyc / Arthropod CYC
1842 / NM_001171060 / NP_001164531 / Acyr_Clk / Arthropod CLK
Aedes aegypti / 1944 / XM_001654547 / XP_001654597 / Aede_Cyc / Arthropod CYC
2703 / XM_001662656 / XP_001662706 / Aedes_Clk / Arthropod CLK
Anopheles gambiae / 1929 / XM_556301 / XP_556301 / Anop_Cyc / Arthropod CYC
3093 / XM_315720 / XP_315720 / Anop_Clk / Arthropod CLK
5265 / XM_321212 / XP_321212 / Anop_Per / Arthropod PER
Apis mellifera / 2778 / XM_001121441 / XP_001121441 / Apis_Cyc / Arthropod CYC
2175 / XM_394233 / XP_394233 / Apis_Clk / Arthropod CLK
3375 / NM_001011596 / NP_001011596 / Apis_Per / Arthropod PER
Bombus terrestris / 2013 / XM_003396440 / XP_003396488 / Bomb_Cyc / Arthropod CYC
2202 / XM_003397937 / XP_003397985 / Bomb_Clk / Arthropod CLK
3360 / XM_003399901 / XP_003399949 / Bomb_Per / Arthropod PER
Camponotus floridanus / 2673 / GL436428 / EFN72014 / Camp_Cyc / Arthropod CYC
2109 / GL443762 / EFN61630 / Camp_Clk / Arthropod CLK
3453 / GL443090 / EFN62591 / Camp_Per / Arthropod PER
Culex quinquefasciatus / 2355 / XM_001864988 / XP_001865023 / Cule_Cyc / Arthropod CYC
1035 / XM_001843362 / XP_001843414 / Cule_Clk / Arthropod CLK
3027 / XM_001849247 / XP_001849299 / Cule_Per / Arthropod PER
Drosophila melanogaster / 1242 / NM_079444 / NP_524168 / Dros_Cyc / Arthropod CYC
3072 / NM_079240 / NP_523964 / Dros_Clk / Arthropod CLK
3657 / NM_080317 / NP_525056 / Dros_Per / Arthropod PER
Harpegnathos saltator / 2634 / GL446181 / EFN88377 / Harp_Cyc / Arthropod CYC
1854 / GL453340 / EFN76178 / Harp_Clk / Arthropod CLK
2928 / GL450042 / EFN81588 / Harp_Per / Arthropod PER
Nasonia vitripennis / 2472 / XM_001602634 / XP_001602684 / Naso_Cyc / Arthropod CYC
2187 / XM_001599207 / XP_001599257 / Naso_Clk / Arthropod CLK
3438 / XM_001604856 / XP_001604906 / Naso_Per / Arthropod PER
Pediculus humanus corporis / 1824 / XM_002432282 / XP_002432327 / Pedi_Cyc / Arthropod CYC
1983 / XM_002429238 / XP_002429283 / Pedi_Clk / Arthropod CLK
3378 / XM_002426256 / XP_002426301 / Pedi_Per / Arthropod PER
Tribolium castaneum / 2018 / NM_001114323 / NP_001107795 / Trib_Cyc / Arthropod CYC
1746 / NM_001113466 / NP_001106937 / Trib_Clk / Arthropod CLK
3348 / NM_001113462 / NP_001106933 / Trib_Per / Arthropod PER
Arachnida / Ixodes scapularis / 2625 / XM_002410846 / XP_002410891 / Ixod_Per / Arthropod PER
Crustacea / Daphnia pulex / 3012 / GL732523 * / EFX90169 / Daph_Cyc / Arthropod CYC
2610 / GL732549 * / EFX79971 / Daph_Clk / Arthropod CLK
3702 / GL732523 * / EFX76293 / Daph_Per / Arthropod PER
Plants / Monocots / Allium cepa / 1872 / GQ232754 / ACT22762 / Alli_F / Plant ZTL
1839 / GQ232755 / ACT22763 / Alli_Z / Plant ZTL
Avena sativa / 3390 / ASTPHT3A / AAA76820 / AvenaA / Plant PHYA
Brachypodium distachyon / 3423 / XM_003559398 / XP_003559446 / BrachyC / Plant PHYC
1923 / XM_003563420 / XP_003563468 / Brach_Ad1 / Plant ZTL
1854 / XM_003574914 / XP_003574962 / Brach_Ad2 / Plant ZTL
1866 / XM_003577431 / XP_003577479 / Brach_Ad3 / Plant ZTL
Hordeum vulgare subsp. vulgare / 3393 / DQ201141 / ABB13322 / HordeumA / Plant PHYA
3444 / DQ238106 / ABB77851 / HordeumC / Plant PHYC
1953 / AK358700 / BAJ89912 / Hordeum_Z / Plant ZTL
1851 / AK363772 / BAJ94975 / Hordeum_Z2 / Plant ZTL
1881 / AK363846 / BAJ95049 / Hordeum_Z3 / Plant ZTL
Oryza sativa / 3387 / X14172 / CAA32375 / OryzaA / Plant PHYA
3516 / AB183525 / BAD86669 / OryzaB / Plant PHYB
3414 / NM_001057831 / NP_001051296 / OryzaC / Plant PHYC
1893 / NM_001074600 / NP_001068068 / Oryza_Z1 / Plant ZTL
1872 / AK242967 / BAH01394 / Oryza_Ad1 / Plant ZTL
1893 / NM_001064973 / NP_001058438 / Oryza_Ad3 / Plant ZTL
Sorghum bicolor / 3396 / AY466073 / AY466073 / SorghA / Plant PHYA
3537 / AY466087 / AAR30903 / SorghB / Plant PHYB
3408 / XM_002466396 / XP_002466441 / SorghC / Plant PHYC
1896 / XM_002438878 / XP_002438923 / Sorgh_Ad1 / Plant ZTL
1839 / XM_002451511 / XP_002451556 / Sorgh_Ad2 / Plant ZTL
1860 / XM_002450867 / XP_002450912 / Sorgh_Ad3 / Plant ZTL
Triticum aestivum / 3393 / AJ313099 / CAC85512 / TriticA / Plant PHYA
3501 / AY888046 / AAX76779 / TriticB / Plant PHYB
3420 / AY673001S2 / AAU06208 / TriticC / Plant PHYC
1857 / EF462214 / ABR14627 / Tritic_Z / Plant ZTL
1881 / DQ923399 / ABL11478 / Tritic_F / Plant ZTL
Zea mays / 3396 / AY234826 / AAP06787 / ZeaA1 / Plant PHYA
3396 / AY260865 / ABO30572 / ZeaA2 / Plant PHYA
3486 / NM_001176339 / NP_001169810 / ZeaB / Plant PHYB
3408 / NM_001138150 / NP_001131622 / ZeaC / Plant PHYC
3408 / AY234829 / AAP06790 / ZeaC1 / Plant PHYC
1857 / NM_001152685 / NP_001146157 / Zea_Z / Plant ZTL
Dicots / Aquilegia formosa / 3393 / GQ471030 / ACV87353 / AquileA / Plant PHYA
3399 / GQ471031 / ACV87354 / AquileB / Plant PHYB
Arabidopsis thaliana / 3369 / NM_100828 / NP_172428 / ArabiA / Plant PHYA
3519 / NM_127435 / NP_179469 / ArabiB / Plant PHYB
3336 / JF318754 / AEM06732 / ArabiC / Plant PHYC
3495 / NM_117721 / NP_193360 / ArabiD / Plant PHYB
3329 / NM_117923 / NP_193547 / ArabiE / Plant PHYE
1881 / NM_001161311 / NP_001154783 / Arabi_Ad1a / Plant ZTL
1830 / NM_125119 / NP_568855 / Arabi_Ad1b / Plant ZTL
1830 / AY039902 / AAK64006 / Arabi_F2 / Plant ZTL
1836 / NM_179652 / NP_849983 / Arabi_LKP2 / Plant ZTL
1806 / NM_127448 / NP_565444 / Arabi_LK2b / Plant ZTL
1794 / AF252295 / AF252295 / Arabi_LK2c / Plant ZTL
1860 / NM_105475 / NP_564919 / Arabi_Ad3 / Plant ZTL
1860 / AF216523 / AAF32298 / Arabi_F1 / Plant ZTL
Beta vulgaris / 3378 / GU057342 / ACY01932 / BetaA / Plant PHYA
Glycine max / 3393 / AB370252 / BAG72094 / GlycineA / Plant PHYA
3393 / EU428747 / ACE79196 / GlycineA2 / Plant PHYA
3369 / EU428748 / ACE79197 / GlycineA3 / Plant PHYA
3414 / NM_001253168 / NP_001240097 / GlycineB / Plant PHYB
3450 / EU428750 / ACE79199 / GlycineB2 / Plant PHYB
3303 / EU428751 / ACE79200 / GlycineB3 / Plant PHYB
3363 / XM_003534982 / XP_003535030 / GlycineE / Plant PHYE
1854 / NM_001248927 / NP_001235856 / Glyci_Z1 / Plant ZTL
1845 / XM_003533669 / XP_003533717 / Glyci_Ad1 / Plant ZTL
1836 / XM_003546361 / XP_003546409 / Glyci_Ad1b / Plant ZTL
1854 / NM_001248942 / NP_001235871 / Glyci_Z2 / Plant ZTL
1878 / NM_001248957 / NP_001235886 / Glyci_F / Plant ZTL
1899 / XM_003530876 / XP_003530924 / Glyci_Ad3 / Plant ZTL
Helianthus annuus / 1745 / GU985591 / ADO61005 / Helia_Z / Plant ZTL
Lotus japonicas / 3432 / AB264087 / BAF44083 / LotusB / Plant PHYB
Medicago sativa / 3008 / GQ379905 / ACU21560 / MedicaA / Plant PHYA
3425 / GQ379902 / ACU21557 / MedicaB / Plant PHYB
Populus trichocarpa / 3381 / XM_002318877 / XP_002318913 / PopulA / Plant PHYA
3456 / AF309806 / AF309806_1 / PopulB1 / Plant PHYB
3441 / XM_002314913 / XP_002314949 / PopulB2 / Plant PHYB
1842 / XM_002324429 / XP_002324465 / Popul_Z / Plant ZTL
1845 / XM_002329629 / XP_002329665 / Popul_Z2 / Plant ZTL
1920 / XM_002312429 / XP_002312465 / Popul_Z3 / Plant ZTL
1764 / XM_002314744 / XP_002314780 / Popul_Z4 / Plant ZTL
Ricinus communis / 3375 / XM_002512550 / XP_002512596 / RiciA / Plant PHYA
3426 / XM_002519184 / XP_002519230 / RiciB / Plant PHYB
1842 / XM_002533173 / XP_002533219 / Rici_Z / Plant ZTL
1893 / XM_002533152 / XP_002533198 / Rici_Ad / Plant ZTL
Solanum lycopersicum / 3372 / NM_001247561 / NM_001247561 / SolanA / Plant PHYA
3396 / AJ002281 / CAA05293 / SolanB1 / Plant PHYB
3366 / AF122901 / AF122901_1 / SolanB2 / Plant PHYB
3414 / AF178571 / AF178571_1 / SolanE / Plant PHYE
3357 / SLU32444 / AAC49301 / SolanF / Plant PHYC/F
Vitis vinifera / 3808 / XM_002278574 / XP_002278610 / VitisA / Plant PHYA
3390 / EU436650 / ACC60966 / VitisB / Plant PHYB
3357 / XM_002268688 / XP_002268724 / VitisC / Plant PHYC
3375 / XM_002271635 / XP_002271671 / VitisE / Plant PHYE
1836 / XM_002269069 / XP_002269105 / Vitis_Ad1 / Plant ZTL
1830 / AM427199 / CAN82181 / Vitis_Z2 / Plant ZTL
1833 / XM_002281248 / XP_002281284 / Vitis_Ad3 / Plant ZTL
Gymnosperm / Pinus sylvestris / 2595 / EU203168 / ABW33488 / Pinu_P / Plant PHY
1838 / EU120526 / ABU94167 / Pinu_N / Plant PHY
Fern / Selaginella moellendorffii / 3429 / XM_002991595 / XP_002991641 / SelagB / Plant PHY
1764 / XM_002990810 / XP_002990856 / Selag_F / Plant ZTL
1764 / XM_002974290 / XP_002974336 / Selag_Z1 / Plant ZTL
Moss / Physcomitrella patens / 3372 / XM_001778103 / XP_001778155 / Physco1 / Plant PHY
3393 / XM_001782287 / XP_001782339 / Physco2 / Plant PHY
3372 / XM_001765983 / XP_001766035 / Physco3 / Plant PHY
3381 / XM_001773498 / XP_001773550 / Physco4 / Plant PHY
3373 / XM_001761093 / XP_001761145 / Physco5a / Plant PHY
3396 / XM_001767172 / XP_001767224 / Physco5b / Plant PHY
3375 / XM_001754314 / XP_001754366 / Physco5c / Plant PHY
Fungi / Ascomycota / Ajellomyces dermatitidis / 2817 / XM_002620635 / XP_002620681 / Ajel_WC1 / FungalWC-1
1377 / GG749496 / EGE85541 / Ajel_WC2 / FungalWC-2
Arthrobotrys oligospora / 2727 / ADOT01000154 / EGX47394 / Arth_WC1 / FungalWC-1
1908 / ADOT01000140 * / EGX48464 / Arth_WC2 / FungalWC-2
Aspergillus clavatus / 2619 / XM_001270598 / XP_001270599 / Aspe_WC1 / FungalWC-1
1155 / XM_001272120 / XP_001272121 / Aspe_WC2 / FungalWC-2
Botryotinia fuckeliana / 3480 / XM_001547949 / XP_001547999 / Botr_WC1 / FungalWC-1
1530 / XM_001559634 / XP_001559684 / Botr_WC2 / FungalWC-2
Chaetomium globosum / 2982 / XM_001219612 / XP_001219613 / Chae_WC1 / FungalWC-1
1407 / XM_001221142 / XP_001221143 / Chae_WC2 / FungalWC-2
Cordyceps militaris / 2892 / JH126399 * / EGX96523 / Cord_WC1 / FungalWC-1
1512 / JH126399 * / EGX95418 / Cord_WC2 / FungalWC-2
Fusarium oxysporum / 3063 / AFQF01001308 / EGU85389 / Fusa_WC1 / FungalWC-1
1458 / AFQF01003377 / EGU75956 / Fusa_WC2 / FungalWC-2
Glomerella graminicola / 3096 / GG697349 / EFQ30482 / Glom_WC1 / FungalWC-1
1374 / GG697332 * / EFQ25592 / Glom_WC2 / Fungal WC-2
579 / GG697380 / EFQ34414 / Glom_VVD / Fungal VVD
Magnaporthe oryzae / 3306 / XM_003716331 / XP_003716379 / Magn_WC1 / FungalWC-1
1671 / XM_003713523 / XP_003713571 / Magn_WC2 / FungalWC-2
678 / XM_003717853 / XP_003717901 / Magn_VVD / Fungal VVD
Metarhizium acridum / 3471 / GL698476 / EFY92414 / Meta_WC1 / FungalWC-1
1368 / GL698628 / EFY84417 / Meta_WC2 / FungalWC-2
Myceliophthora thermophile / 3102 / XM_003665445 / XP_003665493 / Myce_WC1 / FungalWC-1
1278 / XM_003658308 / XP_003658356 / Myce_WC2 / FungalWC-2
Nectria haematococca / 3078 / XM_003040669 / XP_003040715 / Nect_WC1 / FungalWC-1
1374 / XM_003054487 / XP_003054533 / Nect_WC2 / FungalWC-2
462 / XM_003052486 / XP_003052532 / Nect_VVD / Fungal VVD
Neosartorya fischeri / 2598 / XM_001263869 / XP_001263870 / Neos_WC1 / FungalWC-1
1152 / XM_001266771 / XP_001266772 / Neos_WC2 / FungalWC-2
Neurospora crassa / 3396 / XM_954684 / XP_959777 / Neur_WC1 / FungalWC-1
1599 / XM_958726 / XP_963819 / Neur_WC2 / FungalWC-2
588 / XM_952513 / XP_957606 / Neur_VVD / Fungal VVD
Paracoccidioides brasiliensis / 3039 / DS572756 * / EEH49866 / Para_WC1 / FungalWC-1
1470 / DS572751 * / EEH45439 / Para_WC2 / FungalWC-2
Penicillium marneffei / 2892 / DS995905 * / EEA19729 / Peni_WC1 / FungalWC-1
1299 / DS995904 * / EEA20162 / Peni_WC2 / FungalWC-2
Phaeosphaeria nodorum / 3240 / XM_001802225 / XP_001802277 / Phae_WC1 / FungalWC-1
1503 / XM_001804342 / XP_001804394 / Phae_WC2 / FungalWC-2
Pyrenophora tritici-repentis / 2811 / XM_001933532 / XP_001933567 / Pyre_WC1 / FungalWC-1
1425 / XM_001934811 / XP_001934846 / Pyre_WC2 / FungalWC-2
Schizosaccharomyces japonicus / 2298 / XM_002174012 / XP_002174048 / Schj_WC1 / FungalWC-1
Sclerotinia sclerotiorum / 2826 / XM_001586874 / XP_001586924 / Scle_WC1 / FungalWC-1
1491 / XM_001587158 / XP_001587208 / Scle_WC2 / FungalWC-2
Talaromyces stipitatus / 2883 / EQ962658 * / EED14134 / Tala_WC1 / FungalWC-1
1335 / EQ962652 * / EED24491 / Tala_WC2 / FungalWC-2
Thielavia terrestris / 3102 / XM_003653985 / XP_003654033 / Thie_WC1 / FungalWC-1
1383 / XM_003656285 / XP_003656333 / Thie_WC2 / FungalWC-2
Trichoderma reesei / 3123 / GL985065 * / EGR48341 / Tric_WC1 / FungalWC-1
1428 / GL985068 / EGR47575 / Tric_WC2 / FungalWC-2
Verticillium albo-atrum / 2961 / XM_003001940 / XP_003001986 / Vert_WC1 / FungalWC-1
636 / XM_003001693 / XP_003001739 / Vert_VVD / Fungal VVD
Yarrowia lipolytica / 2133 / XM_500260 / XP_500260 / Yarr_WC1 / FungalWC-1
1425 / XM_505029 / XP_505029 / Yarr_WC2 / FungalWC-2
Zymoseptoria tritici / 3207 / XM_003848233 / XP_003848281 / Zymo_WC1 / FungalWC-1
1482 / XM_003857612 / XP_003857660 / Zymo_WC2 / FungalWC-2
Basidiomycota / Cryptococcus gattii / 3291 / XM_003193383 / XP_003193431 / Cryp_WC1 / FungalWC-1
Laccaria bicolor / 1005 / XM_001875407 / XP_001875442 / Lacc_WC2 / FungalWC-2
Melampsora larici-populina / 2856 / GL883091 * / EGG12172 / Mela_WC1 / FungalWC-1
Serpula lacrymans var. lacrymans / 2271 / GL945429 * / EGO30080 / Serp_WC1 / FungalWC-1
1077 / GL945485 * / EGN95626 / Serp_WC2 / FungalWC-2
Schizophyllum commune / 2532 / XM_003028928 / XP_003028974 / Schi_WC1 / FungalWC-1
1053 / XM_003035648 / XP_003035694 / Schi_WC2 / FungalWC-2
Ustilago maydis / 3258 / XM_754234 / XP_759327 / Usti_WC1 / FungalWC-1
2778 / XM_753718 / XP_758811 / Usti_WC2 / FungalWC-2
Bacteria / Acidithiobacillus caldus / 405 / NC_015850 / YP_004749869 / AcidiPYP / Bacterial PYP
Halorhodospira halophila / 378 / NC_008789 / YP_001003384 / HalorhPYP / Bacterial PYP
Rhodobacter sphaeroides / 375 / NC_009050 / YP_001045536 / RhodoPYP / Bacterial PYP
531 / NC_007493 / YP_352285 / RhodoLOV / Bacterial LOV-containing protein
Archaea / Natronomonas pharaonis / 2046 / NC_007426 / YP_325987 / NatroLOV / Bacterio-opsin activator

* DNA sequences are not available.

* *Outgroups