Table ESM 3: List of SSR markers used for diversity analysis

S. No. / Linkage group / Marker name / Genbank accession / *Primer (F= forward, R= reverse) sequence (5'-3') / Putative function / E-value
1 / 1H / GBM1002 / AL505284 / F- available on request / phosphoethanolamine methyltransferase [Triticum aestivum] / 2.00E-36
R- available on request
2 / GBM1007 / AL502027 / F- available on request / beta-catenin [Rattus norvegicus] / 5.80E+00
R- available on request
3 / GBM1013 / AL505545 / F- available on request
R- available on request
4 / GBM1029 / AL450971 / F- available on request / unknown protein [Oryza sativa (japonica cultivar-group)] / 1.00E-60
R- available on request
5 / GBM1061 / AL505768 / F- available on request / flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] / 5.00E-43
R- available on request
6 / GBM1334 / BQ471211 / F-CCTCTTCCGAATCCATCAAA / unknown protein [Oryza sativa (japonica cultivar-group)] / 3.00E-38
R-GAGTTGGGGACTTTGCTGAC
7 / GBM1461 / BQ658699 / F-AAACCATGCATTCTTCAGAGA / unknown protein [Oryza sativa (japonica cultivar-group)] / 1.00E-31
R-TTTAGACCGACCCGATGAAG
8 / 2H / GBM1035 / AL500260 / F- available on request / Aquaporin PIP-type / 6.00E-22
R- available on request
9 / GBM1036 / AL501480 / F- available on request / putative protein kinase [Arabidopsis thaliana] Contains Eukaryotic protein kinase domain. [Arabidopsis thaliana] / 2.40E+00
R- available on request
10 / GBM1047 / AL510272 / F- available on request / [Oryza sativa (japonica cultivar-group)] / 2.00E-07
R- available on request
11 / GBM1208 / BQ470093 / F-CTACCGAGCTCCTCCTCCTC
R-GGCCTCCTTCTTGTCGTAGA
12 / GBM1459 / BQ658820 / F-AACACATCCATACTTCCCCG / putative protease inhibitor [Hordeum vulgare] subtilisin-chymotrypsin inhibitor 2 [Hordeum vulgare subsp. vulgare] / 8.00E-20
R-AGCTGAATAAATGCCCATGC
13 / 3H / GBM1031 / AL506646 / F- available on request / hypothetical protein [Oryza sativa (japonica cultivar-group)] / 9.00E-17
R- available on request
14 / GBM1043 / AL506661 / F- available on request / [Triticum aestivum] spSedoheptulose-1,7-bisphosphatase, chloroplast precursor (Sedoheptulose-bisphosphatase) / 2.00E-83
R- available on request
15 / GBM1059 / AL501573 / F- available on request / hypothetical protein 1 [Gibberella zeae PH-1] / 6.70E+00
R- available on request
16 / GBM1110 / BQ660218 / F-CACCGAAGAAAATCCACCAT / putative brassinosteroid-insensitive protein 1 [Hordeum vulgare] / 6.00E-40
R-CACGCAAGCTTAGAACCTCC
17 / GBM1405 / BQ665269 / F-TACACGCACTGAAAAGACGG / hypothetical protein~similar to Arabidopsis thaliana chromosome 1, [Oryza sativa (japonica cultivar-group)] / 7.00E-14
R-CTCGCTGCTGAGTTTGTCTG
18 / GBM1413 / BQ664760 / F-GGGTGATTTCCCAGGTTTTT / [Oryza sativa (japonica cultivar-group)] / 3.00E-11
R-TTGAGAAAACCACACCCACA
19 / 4H / GBM1003 / AL504110 / F- available on request / hypothetical protein [Oryza sativa (japonica cultivar-group)] / 2.00E-29
R- available on request
20 / GBM1015 / AL501672 / F- available on request / O-methyltransferase [Secale cereale] / 4.00E-11
R- available on request
21 / GBM1018 / AL506570 / F- available on request / arginine/serine-rich splicing factor RSP31 (RSP31) [Arabidopsis thaliana] / 1.00E-52
R- available on request
22 / GBM1020 / AL500405 / F- available on request / PREDICTED: hypothetical protein [Homo sapiens] / 5.20E+00
R- available on request
23 / GBM1221 / AL501017 / F-ACCAGCAATCCAAGTTACGG / [Giardia lamblia ] / 6.80E+00
R-TGCCTTGGTCTTGGTGTGTA
24 / GBM1323 / BQ469705 / F-GCTCTCCAGGGTTCGTTTC / unknown protein [Oryza sativa (japonica cultivar-group)] / 2.00E-59
R-CACCGTCTTGCAGTTGAGAC
25 / GBM1501 / CA000412 / F-TGTGGACAGTCAAACACGCT / putative iron inhibited ABC transporter 2 [Oryza sativa (japonica cultivar-group)] / 1.00E-40
R-AAGGAGCACCTGAAAAGCAA
26 / 5H / GBM1026 / AL503005 / F- available on request / cinnamoyl-CoA reductase [Zea mays] / 4.00E-20
R- available on request
27 / GBM1054 / AL511906 / F- available on request / putative ribosomal protein S18 [Triticum aestivum] / 2.00E-64
R- available on request
28 / GBM1064 / AL502925 / F- available on request / putative cellulose synthase catalytic subunit [Hordeum vulgare] / 1.10E+00
R- available on request
29 / GBM1176 / BQ663268 / F-TATACATCAGCGGGCCTTTT / DNA binding protein [Triticum aestivum] Transcription initiation factor TFIID-2 (TATA-box factor 2) (TATA sequence-binding protein 2) / 4.00E-05
R-CTCCAACCTCGCAAAGAGTC
30 / GBM1363 / BQ469272 / F-AAGAAGGCCAAGCTGAGACA / hypothetical protein [Oryza sativa (japonica cultivar-group)] / 3.00E-47
R-CCTCGATAGGCTCTGTCCTG
31 / GBM1483 / BU998555 / F-CAGTGATATGGACTACGGCG / homeodomain leucine zipper protein [Oryza sativa (japonica cultivar-group)] / 2.00E-17
R-CTTGTTCTCCACCTCGAAGC
32 / 6H / GBM1008 / AL511537 / F- available on request / unknown protein [Oryza sativa (japonica cultivar-group)] / 1.00E-12
R- available on request
33 / GBM1021 / AL501768 / F- available on request / putative protein [Arabidopsis thaliana] / 3.00E-04
R- available on request
34 / GBM1063 / AL501881 / F- available on request / HvPIP2;1 [Hordeum vulgare subsp. vulgare] plasma membrane intrinsic protein BPW1 - barley / 4.00E-27
R- available on request
35 / GBM1075 / AL503602 / F- available on request / histone H2B-1 [Lolium perenne] / 3.00E-23
R- available on request
36 / GBM1212 / BQ665060 / F-TGTTGCAAGAAGCAAGGATG
R-GCGCTTACTCTCTCGTCGTC
37 / GBM1256 / BQ459297 / F-GCCTCGATCTGTGGAAAGAA / putative caleosin [Oryza sativa (japonica cultivar-group)] / 3.00E-27
R-GTCTCGGAGAAGGTGACGAT
38 / GBM1404 / BQ663667 / F-CAAGCCAGCAAACAAACAAA / Unknown protein [Arabidopsis thaliana] forkhead-associated domain-containing protein / FHA domain-containing protein [Arabidopsis thaliana] / 6.00E-03
R-GGGAGTACGTGTTGCTCCAT
39 / 7H / GBM1033 / AL509809 / F- available on request / [Hordeum vulgare subsp. vulgare] Alpha-amylase/trypsin inhibitor CMa precursor (Chloroform/methanol-soluble protein CMa) / 2.00E-61
R- available on request
40 / GBM1060 / AL501681 / F- available on request / GAMYB-binding protein [Hordeum vulgare subsp. vulgare] / 1.00E-12
R- available on request
41 / GBM1326 / BQ461301 / F-AGAGCACAACCCTTGGAGG / unknown protein [Oryza sativa (japonica cultivar-group)] / 2.00E-09
R-GTAGAGGCAGCCCTTCTCCT
42 / GBM1419 / AL507192 / F-CGTCACGCCACTCACCTC / putative 2-oxoacid-dependent oxidase [Oryza sativa (japonica cultivar-group)] / 9.00E-87
R-CTTGAAGTCGGAACCCATGT
43 / GBM1456 / CB867540 / F-GCTCTGCTCTGCTTCGTCTT / putative proline-rich protein APG [Oryza sativa (japonica cultivar-group)] / 1.00E-28
R-AGGTAGTCGTTGTTGCCCAC
44 / GBM1464 / BU993564 / F-ATAGCCGTGCTCTTGCTCAT / putative SEU1 protein [Oryza sativa (japonica cultivar-group)] / 2.00E-36
R-CAAGACCACCATTTGCATTG
45 / GBM1516 / CA029945 / F-CCCTCTCCTTTCCCTATCGT / PREDICTED: hypothetical protein [Canis familiaris] / 1.90E+00
R-GTGGGGTTGATGTTCCTGTT

*Sequences for some primer pairs are not available in public domain, however, these are available with Andreas Graner on request by email () .