1
SM:Additional file1 LysRS2 - gene tree
The order of presentation of the data matches the order in Figure 3and its legend in the article
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Phylum Class Species Source LysRS2
Accession Nr.
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Crenarchaeota ThermoproteiSulfolobus solfataricus NCBIP95970
Crenarchaeota ThermoproteiSulfolobus tokodaii NCBI BAB67182
Crenarchaeota ThermoproteiPyrobaculum aerophilumSwiss-ProtQ8ZWD4
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Clamidiae ClamidiaeChlamydia muridarum NCBIAAF39039 (6)
Clamidiae ClamidiaeChlamydia trachomatis NCBIO84786
Clamidiae ClamidiaeChlamydophila caviae NCBIAAP05580
Clamidiae ClamidiaeChlamydophila abortus NCBICAH64249
Clamidiae ClamidiaeChlamydophila pneumoniae NCBIAAD19069
Clamidiae ClamidiaeParachlamydia sp NCBICAF23952
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Proteobacteria d-proteobacteriaBdellovibriobacteriovorusSwiss-ProtQ6MKP9
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Dein. -thermus DeinococciThermus thermophilus NCBIP41255
Dein. -thermus DeinococciDeinococcus radioduransSwiss-ProtQ9RXE1
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Aquificae AquificaeAquifex aeolicus NCBIO67258
Euryarchaeota MethanomicrobiaMethanosarcina acetivoransSwiss-ProtQ8TSN5
Euryarchaeota MethanomicrobiaMethanosarcina mazeiSwiss-ProtQ8PVP6
Euryarchaeota MethanomicrobiaMethanosarcina barkeriSwiss-ProtQ9C4B9
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Thermotogae ThermotogaeThermotoga maritimaSwiss-ProtQ9X231
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Firmicutes Clostridia Clostridium acetobutylicumSwiss-ProtQ97EB7 (55)
Firmicutes Clostridia Clostridium perfringens NCBIBAB82171
Firmicutes Clostridia ThermoanaerobactertengcongensisSwiss-ProtQ8R7N1
Firmicutes BacilliBacillus licheniformis NCBIAAU21730
Firmicutes BacilliBacillus subtilis NCBIBAA05316
Firmicutes BacilliBacillus cereusSwiss-ProtQ63HC2
Firmicutes BacilliBacillus anthracis NCBIAAP24131
Firmicutes BacilliGeobacillus kaustophilusSwiss-ProtQ5L440
Firmicutes BacilliGeobacillus stearothermophilus NCBIBAA88691
Firmicutes BacilliBacillus haloduransSwiss-ProtQ9KGG4
Firmicutes BacilliBacillus clausii NCBIBAD62660
Firmicutes BacilliStaphylococcus haemolyticus NCBIBAE05802
Firmicutes BacilliStaphylococcus epidermidis NCBIAAO05908
Firmicutes BacilliStaphylococcus aureusSwiss-ProtQ5HIF7
Firmicutes BacilliOceanobacillus iheyensisSwiss-ProtQ8EU10
Firmicutes BacilliExiguobacterium sp NCBIEAM86789
Firmicutes BacilliListeria monocytogenesSwiss-ProtQ724I4
Firmicutes BacilliListeria innocuaSwiss-ProtQ92F47
Firmicutes MolicutesMycoplasma pneumoniae NCBIAAB96206
Firmicutes MolicutesMycoplasma genitalium NCBIP47382
Firmicutes MolicutesMycoplasma gallisepticum NCBIAAP56425
Firmicutes MolicutesUreaplasma urealyticum NCBIAAF30467
Firmicutes MolicutesMycoplasma mycoides NCBICAE76722
Firmicutes MolicutesMesoplasma florumSwiss-Prot Q6F287
Firmicutes MolicutesMycoplasma synoviae NCBIAAZ44018
Firmicutes MolicutesMycoplasma fermentans NCBIAAC43988
Firmicutes MolicutesMycoplasmapulmonis NCBICAC13563
Firmicutes MolicutesMycoplasmahominis NCBIS69892
Firmicutes MolicutesMycoplasmamobile NCBIAAT27530
Firmicutes MolicutesMycoplasmahyopneumoniae NCBIAAZ44294
Firmicutes MolicutesOnion.yellowsphytoplasma NCBIBAD04674
Firmicutes Bacilli Streptococcus thermophilus NCBIZP_00388129
Firmicutes BacilliStreptococcus pneumoniaeSwiss-ProtQ97RS9
Firmicutes BacilliStreptococcus agalactiae NCBIAAM99637
Firmicutes BacilliStreptococcus mutans NCBIAAN58493
Firmicutes BacilliLactococcus lactisSwiss-ProtQ9CII7
Firmicutes BacilliEnterococcus faecalisSwiss-ProtQ839A8
Firmicutes BacilliLactobacillus plantarumSwiss-ProtQ88Z28
Firmicutes BacilliPediococcus pentosaceus NCBIZP_00323784
Firmicutes BacilliLactobacillus casei NCBIZP_00384083
Firmicutes BacilliLeuconostoc mesenteroides NCBIZP_00064363
Firmicutes BacilliOenococcus oeni NCBIZP_00319903
Fusobacteria FusobacteriaFusobacterium nucleatumSwiss-ProtQ8RG52
Firmicutes Clostridia Desulfitobacterium hafniense NCBIEAM94676
Firmicutes Clostridia Syntrophomonas wolfei NCBIEAO22861
Bacteroidetes BacteroidetesBacteroides thetaiotaomicron NCBIAAO77229
Bacteroidetes BacteroidetesBacteroidesfragilis NCBICAH09283
Bacteroidetes BacteroidetesCytophaga hutchinsonii NCBIZP_00310321
Chlorobi Chlorobia Chlorobiumlimicola NCBIEAM42982
Chlorobi ChlorobiaChlorobiumphaeobacteroides NCBIEAM34364
Chlorobi ChlorobiaProsthecochloris vibrioformis NCBIEAO14908
Chlorobi ChlorobiaPelodictyon phaeoclathratiforme NCBIEAN25096
Chlorobi ChlorobiaProsthecochlorisaestuarii NCBIEAN21753
Chlorobi ChlorobiaChlorobium tepidum NCBIAAM72616
Spirochaetes SpirochaetesLeptospirainterrogansSwiss-ProtQ8F4P5
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Planctomycetes PlanctomycetaciaRhodopirellula baltica NCBICAD77044
Proteobacteria a-proteobacteriaAgrobacterium tumefaciens NCBINP_534951
Proteobacteria a-proteobacteriaSinorhizobium meliloti NCBICAC47483
Chloroflexi DehalococcoidetesDehalococcoidesethenogenes NCBIAAW40144
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Acidobacteria AcidobacteriaSolibacter usitatus NCBIEAM57887 (3)
Proteobacteria d-proteobacteriaAnaeromyxobacterdehalogenans NCBIEAL80760
Actinobacteria ActinobacteriaSymbiobacteriumthermophilumSwiss-ProtQ67S33
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Cyanobacteria NostocalesAnabaena variabilis NCBIZP_00161636 (9)
Cyanobacteria NostocalesNostoc sp NCBIBAB75770
Cyanobacteria ChroococcalesSynechococcus elongates NCBIZP_00164084
Cyanobacteria ChroococcalesSynechocystis sp NCBIP73443
Cyanobacteria ChroococcalesThermosynechococcuslongatus NCBIBAC07765
Cyanobacteria ProchloralesProchlorococcus marinusSwiss-ProtQ7UZP0
Cyanobacteria ChroococcalesSynechococcus spSwiss-ProtQ5N1D9
Cyanobacteria GloeobacteriaGloeobacter violaceusSwiss-ProtQ7NG18
Cyanobacteria OscillatorialesTrichodesmium erythraeum NCBIEAO28784
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Actinobacteria ActinobacteriaLeifsonia xyli NCBIAAT89834 (15)
Actinobacteria ActinobacteriaBrevibacterium linens NCBIZP_00378892
Actinobacteria ActinobacteriaCorynebacterium efficiens NCBIBAC19343
Actinobacteria ActinobacteriaCorynebacterium glutamicum NCBINP_601883
Actinobacteria ActinobacteriaCorynebacterium jeikeiumSwiss-ProtQ4JXL1
Actinobacteria ActinobacteriaMycobacterium avium NCBIAAS02776
Actinobacteria ActinobacteriaMycobacterium tuberculosis NCBIO06284
Actinobacteria ActinobacteriaMycobacterium leprae NCBIP46861
Actinobacteria ActinobacteriaNocardia farcinica NCBIBAD55253
Actinobacteria ActinobacteriaBifidobacterium longum NCBIAAN25440
Actinobacteria ActinobacteriaArthrobacter sp NCBIEAL97549
Actinobacteria ActinobacteriaPropionibacterium acnes NCBIAAT81939
Actinobacteria ActinobacteriaNocardioides sp NCBIEAO06074
Actinobacteria ActinobacteriaThermobifida fusca NCBIZP_00293151
Actinobacteria ActinobacteriaFrankia sp NCBIEAN14067
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Proteobacteria d-proteobacteriaDesulfovibrio desulfuricans NCBIZP_00131094 (80)
Proteobacteria d-proteobacteriaDesulfovibrio vulgaris NCBIAAS96849
Proteobacteria d-proteobacteriaSyntrophobacter fumaroxidans NCBI EAO20646
Proteobacteria d-proteobacteriaDesulfotalea psychrophila NCBICAG36358
Proteobacteria d-proteobacteriaGeobacter sulfurreducensSwiss-ProtQ74AT0
Proteobacteria d-proteobacteriaGeobacter metallireducens NCBIEAM78203
Proteobacteria d-proteobacteriaPelobacter propionicus NCBIEAO35297
Proteobacteria d-proteobacteriaDesulfuromonas acetoxidans NCBIEAM69994
Proteobacteria e-proteobacteriaHelicobacter hepaticus NCBIAAP78263
Proteobacteria e-proteobacteriaHelicobacter pylori NCBIAAD07251
Proteobacteria e-proteobacteriaWolinella succinogenesSwiss-ProtQ7MAR1
Proteobacteria e-proteobacteriaCampylobacter coli NCBIEAL56722
Proteobacteria e-proteobacteriaCampylobacter jejuniSwiss-ProtQ5HW66
Proteobacteria e-proteobacteriaCampylobacter upsaliensis NCBIEAL52475
Proteobacteria e-proteobacteriaCampylobacter lari NCBIEAL54226
Proteobacteria e-proteobacteriaThiomicrospira denitrificans NCBIEAO04113
Proteobacteria unclassifiedUncultured Magnetococcus sp NCBIEAN28803
Proteobacteria g-proteobacteriaXanthomonas oryzae NCBIAAW76126
Proteobacteria g-proteobacteriaXanthomonas axonopodis NCBIAAM36738
Proteobacteria g-proteobacteriaXylella fastidiosaSwiss-ProtQ87EB3
Environmental sampleUncultured bacterium 580 NCBIAAS07872
Proteobacteria b-proteobacteriaNeisseria gonorrhoeae NCBIAAW90095
Proteobacteria b-proteobacteriaNeisseria meningitidesSwiss-ProtQ9JTT7
Proteobacteria b-proteobacteriaChromobacterium violaceumSwiss-ProtQ7NZ62
Proteobacteria b-proteobacteriaAzoarcus sp NCBICAI10033
Proteobacteria b-proteobacteriaDechloromonas aromatica NCBIZP_00151178
Proteobacteria b-proteobacteriaBurkholderia cepacia NCBIZP_00212730
Proteobacteria b-proteobacteriaBurkholderia cenocepacia NCBI EAM12821
Proteobacteria b-proteobacteriaBurkholderia vietnamiensis NCBIEAM29872
Proteobacteria b-proteobacteriaBurkholderia mallei NCBIAAU47811
Proteobacteria b-proteobacteriaBurkholderia fungorum NCBIZP_00283787
Proteobacteria b-proteobacteriaRalstonia eutropha NCBIZP_00170910
Proteobacteria b-proteobacteriaRalstonia metallidurans NCBIEAN53144
Proteobacteria b-proteobacteriaRalstonia solanacearum NCBICAD14730
Proteobacteria b-proteobacteriaPolaromonas sp NCBIEAM41395
Proteobacteria b-proteobacteriaBordetella pertussis NCBICAE41400
Proteobacteria b-proteobacteriaBordetella bronchiseptica NCBICAE32789
Proteobacteria b-proteobacteriaBordetella parapertussis NCBICAE37345
Proteobacteria b-proteobacteriaMethylobacillus flagellatus NCBIEAN03032
Proteobacteria b-proteobacteriaNitrosomonas eutropha NCBIEAO17616
Proteobacteria b-proteobacteriaNitrosomonas europaeaSwiss-ProtQ82SH1
Environmental sampleUncultured bacterium 577 NCBIAAR38056
Proteobacteria b-proteobacteriaThiobacillus denitrificans NCBIZP_00335928
Proteobacteria g-proteobacteriaMethylococcus capsulatus NCBIAAU90453
Proteobacteria g-proteobacteriaIdiomarina loihiensisSwiss-ProtQ5QYV9
Proteobacteria g-proteobacteriaCoxiella burnetii NCBIAAO89981
Proteobacteria g-proteobacteriaLegionella pneumophilaSwiss-ProtQ5WVS0
Proteobacteria g-proteobacteriaFrancisella tularensisSwiss-ProtQ5NI89
Proteobacteria g-proteobacteriaWigglesworthia glossinidia NCBIBAC24587
Proteobacteria g-proteobacteriaBuchnera aphidicola NCBIBAB13135
Proteobacteria g-proteobacteriaCandidatus Blochmannia pennsyl. NCBIAAZ40901
Proteobacteria g-proteobacteriaEscherichia coli NCBICAD66193
Proteobacteria g-proteobacteriaCitrobacter freundii NCBIAAP40013
Proteobacteria g-proteobacteriaShigella flexneriSwiss-ProtQ83JU6
Proteobacteria g-proteobacteriaSalmonella typhiSwiss-ProtQ8Z3X8
Proteobacteria g-proteobacteria E.coli heat/inducedSwiss-ProtQ8FAT5
Proteobacteria g-proteobacteriaYersinia pestisSwiss-ProtQ8ZHK5
Proteobacteria g-proteobacteriaPhotorhabdus luminescensSwiss-ProtQ7N1C8f
Proteobacteria g-proteobacteriaErwinia carotovoraSwiss-ProtQ6D945
Proteobacteria g-proteobacteriaPasteurella multocida NCBIP57822
Proteobacteria g-proteobacteriaHaemophilus somnus NCBIZP_00131887
Proteobacteria g-proteobacteriaHaemophilus influenzae NCBIP43825
Proteobacteria g-proteobacteriaPseudomonas putida NCBIAAN67117
Proteobacteria g-proteobacteriaPseudomonas aeruginosa NCBIZP_00137095
Proteobacteria g-proteobacteriaPseudomonas siringae NCBI AAZ33422
Proteobacteria g-proteobacteriaAzotobacter vinelandii NCBIEAM05680
Proteobacteria g-proteobacteriaPsychrobacter cryohalolentis NCBIEAO10955
Proteobacteria g-proteobacteriaPsychrobacter arcticum NCBIAAZ18906
Proteobacteria g-proteobacteriaAcinetobacter sp NCBICAA86924
Proteobacteria g-proteobacteriaChromohalobacter salexigens NCBIEAM22372
Proteobacteria g-proteobacteriaMicrobulbifer degradans NCBIZP_00315209
Proteobacteria g-proteobacteriaShewanella oneidensis NCBIAAN54065
Proteobacteria g-proteobacteriaShewanella baltica NCBIEAN44386
Proteobacteria g-proteobacteriaShewanella denitrificans NCBIEAN72165
Proteobacteria g-proteobacteriaShewanella frigidimarina NCBIEAN75347
Proteobacteria g-proteobacteriaShewanella amazonensis NCBIEAM57887
Proteobacteria g-proteobacteriaVibrio vulnificus NCBIBAC93433
Proteobacteria g-proteobacteriaVibrio cholerae NCBIAAF93829
Proteobacteria g-proteobacteriaVibrio fischeri NCBIAAW84948
Proteobacteria g-proteobacteriaColwellia psychrerythraea NCBIAAZ26689
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