Ismail et al. - pEA68: A novel plasmid of E. amylovoraPage 1

Supplemental table 1: List of annotations of pEA68, comparison to pEA72 and pEA78 and best Blast hit in the NCBI database based on BlastP analysis (status July 2014).

pEA68 / BlastP analysis
Locus tag / Gene name / Annotation / pEA72 / pEA78 / Best BlastP hit / % seq. ID
EAMY692_p10001 / repA / Replication protein A / EAM_P202 (86%) / - / hypothetical protein EAM_P202 [Erwinia amylovora ATCC 49946] / 86%
EAMY692_p10002 / hypothetical secreted protein / - / - / No hits
EAMY692_p10003 / hypothetical protein / - / - / hypothetical protein P348_03570 [Enterobacter sp. DC3] / 57%
EAMY692_p10004 / transposase IS66 family protein / - / - / IS26-TnpA protein [Escherichia coli P12b] / 95%
EAMY692_p10005 / hypothetical protein / - / LA637_p2008 (80%) / putative membrane protein [Erwinia amylovora LA637] / 80%
EAMY692_p10006 / hypothetical protein / - / - / hypothetical protein UUU_26010 [Klebsiellapneumoniae subsp. pneumoniae DSM 30104] / 31%
EAMY692_p10007 / hypothetical protein / - / - / hypothetical protein EbC_pEb10200110 [Erwiniabillingiae Eb661] / 79%
EAMY692_p10008 / hypothetical protein / - / - / No hits
EAMY692_p10009 / restriction endonuclease / - / - / restriction endonuclease [Salmonella enterica subsp. entericaserovarEnteritidis str. 3402] / 90%
EAMY692_p10010 / vagD / toxin-antitoxin system / - / - / virulence associated gene D protein [Salmonella enterica subsp. enterica serovar Poona str. ATCC BAA-1673] / 93%
EAMY692_p10011 / vagC / toxin-antitoxin system / - / - / hypothetical protein L287_23645 [Salmonella enterica subsp. entericaserovarInfantis str. 119944] / 93%
EAMY692_p10012 / hypothetical protein / - / LA637_p2014 (35%) / hypothetical protein Ent638_4324 [Enterobacter sp. 638] / 64%
EAMY692_p10013 / resD / Resolvase / - / LA637_p2015 (78%) / resolvase [Pantoeaagglomerans Eh318] / 86%
EAMY692_p10014 / hypothetical membrane protein / - / - / No hits
EAMY692_p10015 / parA / ParA-like protein / - / - / chromosome partitioning ATPase [Rahnellaaquatilis CIP 78.65 = ATCC 33071] / 83%
EAMY692_p10016 / hypothetical protein / - / - / No hits
EAMY692_p10017 / umuC / DNA polymerase V subunit UmuC / EAM_P217 (83%) / LA637_p2017 (70%) / DNA polymerase V subunit [Erwiniabillingiae Eb661] / 86%
EAMY692_p10018 / umuD / DNA polymerase V subunit / EAM_P216 (73%) / LA637_p2018 (59%) / DNA polymerase V subunit [Erwiniabillingiae Eb661] / 71%
EAMY692_p10019 / stbA / stable plasmid inheritance protein StbA / EAM_P217 (80%) / - / plasmid stability protein [Erwinia amylovora ATCC 49946] / 80%
EAMY692_p10020 / stbB / plasmid stability protein StbB / EAM_P218 (66%) / - / plasmid stability protein [Erwinia amylovora ATCC 49946] / 66%
EAMY692_p10021 / hypothetical protein / - / LA637_p2020 (67%) / hypothetical protein LA637_p2020 [Erwinia amylovora LA637] / 67%
EAMY692_p10022 / hypothetical protein / - / - / hypothetical protein [Serratiamarcescens] / 96%
EAMY692_p10023 / istB / Insertion sequence IS21 putative ATP-binding protein / - / - / transposase [Serratiamarcescens] / 99%
EAMY692_p10024 / hypothetical protein / EAM_P221 (52%) / LA637_p2020 (74%) / hypothetical protein LA637_p2020 [Erwinia amylovora LA637] / 74%
EAMY692_p10025 / hypothetical protein / - / LA637_p2021 (72%) / hypothetical protein LA637_p2021 [Erwinia amylovora LA637] / 72%
EAMY692_p10026 / yubD / Putative methylaseYubD / EAM_P224 (70%) / LA637_p2022 (89%) / methylase [Pantoea dispersa EGD-AAK13] / 93%
EAMY692_p10027 / hypothetical protein / EAM_P226 (59%) / - / hypothetical protein N172_20590 [Pantoeadispersa EGD-AAK13] / 83%
EAMY692_p10028 / hypothetical protein / - / - / hypothetical protein L362_04516 [Enterobacter sp. MGH 16] / 42%
EAMY692_p10029 / hypothetical protein / - / - / No hits
EAMY692_p10030 / Conserved hypothetical protein / - / - / hypothetical protein EbC_pEb17201790 [Erwiniabillingiae Eb661] / 71%
EAMY692_p10031 / yfjQ / UPF0380 protein YfjQ / - / - / hypothetical protein [Pantoeaananatis] / 75%
EAMY692_p10032 / mobC / mobilization protein MobC / EAM_P240 (44%) / LA637_p2036 (48%) / hypothetical protein [Pantoeaananatis] / 46%
EAMY692_p10033 / mobB / mobilization protein MobB / EAM_P241 (58%) / LA637_p2037 (57%) / putative mobilization protein MobB [Serratia fonticola AU-AP2C] / 66%
EAMY692_p10034 / mobA / putative relaxase/mobilization protein / EAM_P242 (71%) / LA637_p2038 (82%) / mobilization protein [Pantoeaananatis] / 84%
EAMY692_p10035 / hypothetical protein / - / - / hypothetical protein [Pantoeaananatis / 65%
EAMY692_p10036 / traY / conjugal transfer protein / EAM_P244 (49%) / LA637_p2040 (94%) / conjugal transfer protein [Erwinia amylovora LA637] / 94%
EAMY692_p10037 / Conserved hypothetical protein / EAM_P246 (67%) / - / hypothetical protein EAM_P246 [Erwinia amylovora ATCC 49946] / 67%
EAMY692_p10038 / hypothetical secreted protein / - / - / hypothetical protein N172_20490 [Pantoeadispersa EGD-AAK13] / 27%
EAMY692_p10039 / conjugal transfer protein / EAM_P248 (50%) / LA637_p2042 (73%) / type IV pilus biogenesis outer membrane protein precursor [Erwinia amylovora LA637] / 73%
EAMY692_p10040 / pilM / type IV pilus biogenesis protein PilM / - / LA637_p2043 (86%) / type IV pilus biogenesis protein PilM [Erwinia amylovora LA637] / 86%
EAMY692_p10041 / pilN / type IV pilus biogenesis protein PilN / EAM_P249 (32%) / LA637_p2044 (91%) / type IV pilus biogenesis protein PilN [Erwinia amylovora LA637] / 91%
EAMY692_p10042 / pilO / Pilin accessory protein PilO / EAM_P250 (30%) / LA637_p2045 (86%) / Pilin accessory protein PilO [Erwinia amylovora LA637] / 86%
EAMY692_p10043 / pilP / type IV pilus biogenesis protein PilP / - / LA637_p2046 (78%) / type IV pilus biogenesis protein PilP [Erwinia amylovora LA637] / 78%
EAMY692_p10044 / pilQ / type IV secretion system protein PilQ / EAM_P252 (34%) / LA637_p2047 (91%) / type IV secretion system protein PilQ [Erwinia amylovora LA637] / 91%
EAMY692_p10045 / pilR / type IV pilus integral membrane protein PilR / EAM_P253 (31%) / LA637_p2048 (81%) / type IV pilus integral membrane protein PilR [Erwinia amylovora LA637] / 81%
EAMY692_p10046 / prepilin / EAM_P254 (25%) / LA637_p2049 (81%) / type IV pilus prepilin PilS [Erwinia amylovora LA637] / 81%
EAMY692_p10047 / lytic transglycosylase / EAM_P261 (69%) / LA637_p2050 (94%) / conjugal transfer protein PilT [Erwinia amylovora LA637] / 94%
EAMY692_p10048 / pilP / type IV pilus biogenesis protein PilP / - / LA637_p2051 (71%) / prepilin peptidase PilU [Erwinia amylovora LA637] / 71%
EAMY692_p10049 / hypothetical protein / EAM_P256 (31%) / LA637_p2052 (85%) / Shufflon protein PilV [Erwinia amylovora LA637] / 85%
EAMY692_p10050 / acetyltransferase / - / - / acetyltransferase, partial [Pantoeaananatis] / 88%
EAMY692_p10051 / Conserved hypothetical protein / - / - / hypothetical protein N172_20420 [Pantoeadispersa EGD-AAK13] / 81%
EAMY692_p10052 / traI / conjugal transfer protein TraI / EAM_P263 (91%) / LA637_p2055 (96%) / conjugal transfer protein TraI [Erwinia amylovora LA637] / 96%
EAMY692_p10053 / traJ / type IV pilus biogenesis protein TraJ / EAM_P264 (80%) / LA637_p2056 (91%) / type IV pilus biogenesis protein TraJ [Erwinia amylovora LA637] / 91%
EAMY692_p10054 / traK / conjugal transfer protein TraK / EAM_P265 (77%) / LA637_p2057 (92%) / conjugal transfer protein TraK [Erwinia amylovora LA637] / 92%
EAMY692_p10055 / traC / DNA primase / EAM_P266 (65%, 56%) / LA637_p2058 (78%, 70%) / hypothetical protein L581_1531 [Serratia fonticola AU-AP2C] / 49%
EAMY692_p10056 / traL / conjugal transfer protein TraL / EAM_P267 (77%) / LA637_p2059 (88%) / conjugal transfer protein TraL [Erwinia amylovora LA637] / 88%
EAMY692_p10057 / traM / conjugal transfer protein TraM / EAM_P268 (78%) / LA637_p2060 (84%) / conjugal transfer protein TraM [Erwinia amylovora LA637] / 84%
EAMY692_p10058 / traN / conjugal transfer protein TraN / EAM_P269 (75%) / LA637_p2061 (92%) / conjugal transfer protein TraN [Erwinia amylovora LA637] / 92%
EAMY692_p10059 / traO / conjugal transfer protein TraO / EAM_P270 (67%) / LA637_p2062 (83%) / conjugal transfer protein TraO [Erwinia amylovora LA637] / 83%
EAMY692_p10060 / conjugal transfer protein / EAM_P271 (56%) / LA637_p2063 (70%) / conjugal transfer protein TraP [Erwinia amylovora LA637] / 70%
EAMY692_p10061 / traQ / conjugal transfer protein TraQ / EAM_P272 (71%) / LA637_p2064 (91%) / conjugal transfer protein TraQ [Erwinia amylovora LA637] / 91%
EAMY692_p10062 / traR / conjugal transfer protein TraR / EAM_P273 (53%) / LA637_p2065 (81%) / conjugal transfer protein TraR [Erwinia amylovora LA637] / 81%
EAMY692_p10063 / hypothetical membrane protein / - / - / hypothetical protein ETA_pET490290 [Erwiniatasmaniensis Et1/99] / 51%
EAMY692_p10064 / hypothetical membrane protein / - / LA637_p2068 (62%) / putative membrane protein [Erwinia amylovora LA637] / 62%
EAMY692_p10065 / traT / conjugal transfer protein TraT / EAM_P274 (74%) / LA637_p2072 (84%) / conjugal transfer protein TraT [Erwinia amylovora LA637] / 84%
EAMY692_p10066 / traU / conjugal transfer protein TraU / EAM_P275 (77%) / LA637_p2073 (91%) / conjugal transfer protein TraU [Erwinia amylovora LA637] / 91%
EAMY692_p10067 / traW / conjugal transfer protein TraW / EAM_P276 (83%) / LA637_p2074 (90%) / conjugal transfer protein TraW [Erwinia amylovora LA637] / 90%
EAMY692_p10068 / prepilin peptidase-dependent protein / EAM_P276 (64%) / LA637_p2075 (80%) / prepilin peptidase-dependent protein [Erwinia amylovora LA637] / 80%
EAMY692_p10069 / traX / conjugal transfer protein TraX / EAM_P276 (60%) / LA637_p2076 (83%) / conjugal transfer protein TraX [Erwinia amylovora LA637] / 83%
EAMY692_p10070 / hypothetical protein / EAM_P280 (52%) / LA637_p2078 (55%) / hypothetical protein [Pantoeaananatis] / 73%
EAMY692_p10071 / hypothetical protein / - / LA637_p2079 (88%) / hypothetical protein LA637_p2079 [Erwinia amylovora LA637] / 88%
EAMY692_p10072 / traY / conjugal transfer protein TraY / EAM_P281 (82%) / LA637_p2081 (93%) / conjugal transfer protein TraY [Erwinia amylovora LA637] / 93%
EAMY692_p10073 / excA / surface exclusion protein ExcA / EAM_P282 (53%) / LA637_p2082 (75%) / hypothetical protein N172_22465 [Pantoeadispersa EGD-AAK13] / 78%
EAMY692_p10074 / trbA / conjugal transfer protein TrbA / EAM_P283 (75%) / LA637_p2083 (88%) / conjugal transfer protein TrbA [Erwinia amylovora LA637] / 88%
EAMY692_p10075 / trbB / conjugative transfer protein TrbB / EAM_P284 (55%) / LA637_p2084 (63%) / conjugal transfer protein TrbB [Erwinia amylovora LA637] / 63%
EAMY692_p10076 / trbC / conjugal transfer protein TrbC / EAM_P285 (81%) / LA637_p2085 (89%) / conjugal transfer protein, partial [Pantoea ananatis] / 91%
EAMY692_p10077 / hypothetical protein / - / LA637_p2088 (72%) / hypothetical protein LA637_p2088 [Erwinia amylovora LA637] / 72%
EAMY692_p10078 / nuc / endonuclease / EAM_P287 (85%) / LA637_p2089 (91%) / endonuclease [Erwinia amylovora LA637] / 91%
EAMY692_p10079 / hypothetical protein / - / - / No hits