A Was the Linkage Groups of the Ssrs and Snps in This Study

Table S5Controversial map position in the linkage group for SSRs and SNPsin the ‘Zisai Pearl’ × ‘Red Fuji’ (Malusasiatica×M. domestica) mapping population

SSR / Linkage Group / Chromosome
A / B / C
CN489916 / 1 / 5 / 5
Hi02b10 / 1 / 16 / 2
CTG1076025 / 1 / 13 / 13
CN914458 / 1/7 / 16 / 1
CTG1061931 / 2 / 5 / 5
Hi05f12 / 2 / 3/9/12 / 3
Hi21f08 / 3 / 6/10 / 5
CN904664 / 4 / 9 / 9
CTG1071157 / 5 / 15 / 15
CTG1075992 / 5 / 10 / 7
CTG1073688 / 6 / 3 / 15
CTG1076718 / 6/15 / 6 / 6
CTG1059098 / 7 / 1 / 1
CTG1066085 / 8 / 10 / 15
CTG1069215 / 8/15 / 15 / 15
Z71981-SSR / 8/15 / 15 / 15
CH03a02 / 8/15 / 11/14 / 14
CN856811 / 10 / 11 / 17
CTG1065429 / 11 / 2 / 2
Hi03b03 / 12/17 / 12 / 12
CH05c06 / 13/16 / 5/16 / 16
CTG1060251 / 15 / 9/17 / 9
Hi21e04 / 15 / 14 / 14
CTG1064665 / 17 / 9 / 9
GDsnp01916 / 7 / 1 / 1
MdSNPui00311 / 4 / 9 / 9
MdSNPui02219 / 8 / 15 / 15
MdSNPui05507 / 3 / 11 / 10
MdSNPui09716 / 3 / 10 / 10

A was the linkage groups of the SSRs and SNPs in this study.

B was the linkage groups contained the SSRs reported previously (Celton et al. 2009a; Celton et al. 2009b; Han et al. 2011; Liebhard et al. 2002; Liebhard et al. 2003; Silfverberg-Dilworth et al. 2006; Zhang et al. 2012), and SNPs reported previously (Khan et al. 2012b, 2014).

C was the chromosome of the ‘Golden Delicious’ genome draft by comparing primer sequences of markers with the genome sequences.