TABLES1.Bacterial strains included in the present study, their origins and the initial identifications as received

Strain / Preliminary identification / Specimen / Geographical origin / Year / aIdentification methods
A31/70 / P. stutzeri / Clinical material / United Kingdom / 1973 / Biochemical tests
CCUG 58779 / Pseudomonas novel species / Bronchial alveolar lavage / Göteborg, Sweden / 2009 / Phenotyping, API 20NE, API Zym, CFA (FAME), 16S rRNA and gyrB
CCUG 59542 / P. fluorescens- complex / Bronchus / Göteborg, Sweden / 2010 / API 20NE and 16S rRNA
CCUG 61063 / P. fluorescens- complex / Wound / Göteborg, Sweden / 2011 / Phenotyping
CCUG 61232 / Pseudomonas novel species / Drainage / Göteborg, Sweden / 2011 / Phenotyping, API 20NE, Ps-rpoD
CCUG 62222 / P. marginalis / Sputum / Göteborg, Sweden / 2012 / Phenotyping, API 20NE, API Zym, 16S rRNA and rpoB
CCUG 62357 / Pseudomonas novel species / Lung Tissue / Göteborg, Sweden / 2012 / Phenotyping, API 20NE, 16S rRNA and Ps-rpoB
CCUG 62864 / Pseudomonas novel species / Sputum / Göteborg, Sweden / 2012 / Phenotyping, API 20NE, API Zym and Ps-rpoD
CCUG 62879 / Pseudomonas sp. / Blood / Kalmar, Sweden / 2012 / Phenotyping, API 20NE and API Zym
CCUG 63225 / P. graminis / Sputum / Göteborg, Sweden / 2012 / Phenotyping, API 20NE, API Zym, 16S rRNA and Ps-rpoD
CCUG 63715 / Pseudomonas novel species / Sputum / Göteborg, Sweden / 2012 / Phenotyping, API 20NE, Ps-rpoD
CCUG 64025 / Pseudomonas novel species / Sputum, bCF / Göteborg, Sweden / 2013 / Phenotyping, API 20NE, 16S rRNA and Ps-rpoD
CCUG 64104 / Pseudomonas novel species / Sputum / Göteborg, Sweden / 2013 / Phenotyping, API 20NE and Ps-rpoD
CCUG 64255 / Pseudomonas novel species / Sputum / Göteborg, Sweden / 2013 / Phenotyping, API 20NE and 16S rRNA
CCUG 64356 / Pseudomonas sp. / Sputum, bCF / Göteborg, Sweden / 2013 / Phenotyping, API 20NE, 16S rRNA and Ps-rpoB
CCUG 64384 / Pseudomonas sp. / Sputum / Göteborg, Sweden / 2013 / Phenotyping, API 20NE and Ps-rpoB
CCUG 64416 / Pseudomonas sp. / Faeces / Göteborg, Sweden / 2013 / Phenotyping, API 20NE, API Zym, 16S rRNA and Ps-rpoD
CCUG 64951 / Pseudomonas novel species / Human tissue / Göteborg, Sweden / 2013 / Phenotyping, API 20NE, 16S rRNAand Ps-rpoD
CCUG 66625 / Pseudomonas novel species / Sputum, bCF / Göteborg, Sweden / 2014 / Phenotyping, API 20NE, API Zym and Ps-rpoD
CCUG 66839 / P. fragi / Sputum / Göteborg, Sweden / 2015 / Phenotyping, API 20NE and Ps-rpoD
CCUG 67000 / P. fluorescens- complex / Sputum / Göteborg, Sweden / 2015 / Phenotyping, API 20NE and Ps-rpoD
CCUG 67011 / Pseudomonas novel species / Sputum, bCF / Göteborg, Sweden / 2015 / Phenotyping, API 20NE and Ps-rpoD
CCUG 67034 / Pseudomonas novel species / Sputum / Göteborg, Sweden / 2015 / Phenotyping, API 20NE and Ps-rpoD
CCUG 67147 / Pseudomonas novel species / Sputum / Göteborg, Sweden / 2015 / Phenotyping, API 20NE, API Zym and Ps-rpoD
CCUG 67210 / Pseudomonas novel species / Sputum, bCF / Göteborg, Sweden / 2015 / Phenotyping, API 20NE, API Zym and Ps-rpoD
SD129 / P. stutzeri / Hospital culture collection / Palma, Spain / 2011 / MicroScan
SE1 / P. fluorescens/P. putida / Ulcer / Palma, Spain / 2013 / API 20NE and Microscan
SE2 / P. fluorescens/P. putida / Sputum / Palma, Spain / 2013 / API 20NE, Microscan
SE3 / P. stutzeri / Oticexudate / Palma, Spain / 2013 / API 20NE and Microscan
SE4 / P. stutzeri / Abscess / Palma, Spain / 2013 / API 20NE and Microscan
SE5 / P. fluorescens/P. putida / Biopsy / Palma, Spain / 2013 / API 20NE and Microscan
SE6 / P. fluorescens/P. putida / Biopsy / Palma, Spain / 2013 / API 20NE and Microscan
SE7 / P. stutzeri / Sputum / Palma, Spain / 2013 / API 20NE and Microscan
SE9 / Flavimonasoryzihabitans / Wound / Palma, Spain / 2013 / API 20NE and Microscan
SE10 / P. fluorescens/P. putida / Blood / Palma, Spain / 2013 / API 20NE and Microscan
SE11 / P. fluorescens/P. putida / Sputum / Palma, Spain / 2013 / API 20NE and Microscan
SE12 / P. fluorescens/P. putida / Blood / Palma, Spain / 2013 / API 20NE and Microscan
SE14 / P. stutzeri / Wound / Palma, Spain / 2013 / API 20NE and Microscan
SE15 / P. stutzeri / Sputum / Palma, Spain / 2013 / API 20NE and Microscan
SE16 / P. stutzeri / Wound / Palma, Spain / 2013 / API 20NE and Microscan
SE17 / P. stutzeri / Cutaneous / Palma, Spain / 2013 / API 20NE and Microscan
SE18 / P. fluorescens / Sputum / Palma, Spain / 2014 / API 20NE and Microscan
SE19 / Flavimonasoryzihabitans / Sputum / Palma, Spain / 2014 / API 20NE and Microscan
SE20 / Pseudomonas sp. / Sputum / Palma, Spain / 2014 / API 20NE and Microscan
SE21 / Pseudomonas sp. / Sputum / Palma, Spain / 2014 / API 20NE and Microscan
SE22 / P. fluorescens/P. putida / Sputum / Palma, Spain / 2014 / API 20NE and Microscan
SE23 / P. fluorescens/P. putida / Breast milk / Palma, Spain / 2014 / API 20NE and Microscan
SE24 / P. fluorescens/P. putida / Sputum / Palma, Spain / 2014 / API 20NE and Microscan
SE25 / P. stutzeri / Ulcer / Palma, Spain / 2014 / API 20NE and Microscan
SE26 / P. fluorescens/P. putida / Sputum / Palma, Spain / 2014 / API 20NE and Microscan
SE27 / P. stutzeri / Ulcer / Palma, Spain / 2014 / API 20NE and Microscan
SE28 / P. stutzeri / Surgical wound / Palma, Spain / 2014 / API 20NE and Microscan

aIdentification methods used previously in the clinical laboratories for preliminary identifications: Classical phenotyping, API 20NE, API Zym; Molecular identification: 16S rRNA, gyrB, rpoB, rpoD gene partial sequences.

bAbbreviation: CF (Cystic fibrosis).