Table S3. Glycine max genes up-regulated by T3SS signalling.

Numbera / ID / Similarity / Fold changeb / P-value
1 / BI316036.1 / Root nodule extensin / 71.55 / 0.0063
2 / CO985886.1 / Gibberellin 3-beta-dioxygenase 1-like protein / 14.11 / 0.0117
3 / BW679106.1 / F-box/kelch-repeat protein / 10.67 / 0.0021
4 / AW830341.1 / Glycine max hypothetical 17.8 KD protein / 7.60 / 0.0032
5* / CO980773.1 / Endo-beta-1,4-glucanase / 6.94 / 0.0367
6* / BI470591.1 / Glycine max cDNA clone : Gm-c1080-799 / 6.87 / 0.0156
7 / BI971063.1 / Subtilisin-like protease / 6.45 / 0.0037
8* / CD406334.1 / Cyclin / 5.53 / 0.0443
9 / BW657022.1 / Nodule inception protein (nin). / 5.10 / 0.0135
10 / CO978759.1 / CASP-like protein N24-like protein / 4.63 / 0.0126
11 / BI425123.1 / Cytochrome P450 71A1-like protein / 4.10 / 0.0028
12 / BI967256.1 / Uncharacterized protein / 3.60 / 0.0019
13 / CF922378.1 / Early nodulin GmN36a / 3.33 / 0.0230
14 / BW676262.1 / ENOD40-2 / 3.30 / 0.0336
15* / BW657195.1 / Glycine soja DREB1 mRNA / 2.98 / 0.0001
16* / BU927198.1 / Early nodulinGmN93. / 2.89 / 0.0451
17 / BW676134.1 / Glycine max cDNA clone : Gm-c1082-2286 / 2.85 / 0.0044
18* / BI893266.1 / Glycine max cDNA clone : Gm-c1068-3345 / 2.49 / 0.0082
19* / AW760372.1 / Glycine max cDNA clone : Gm-c1027-4652 / 2.41 / 0.0440
20* / BW672916.1 / D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily / 2.39 / 0.0285
21 / BI970567.1 / Uncharacterized protein / 2.36 / 0.0323
22 / BI426827.1 / Indole-3-acetate O-methyltransferase 1-like protein / 2.31 / 0.0031
23 / BI969878.1 / Uncharacterized protein / 2.27 / 0.0081
24* / BQ134006.1 / Cytochrome P450 monooxygenase CYP78A3p (CYP78A3) / 2.21 / 0.0079
25 / BE346992.1 / Uncharacterized protein / 2.13 / 0.0271
26* / BQ297369.1 / Glycine max cDNA clone Gm-c1054-5987 / 2.11 / 0.0170
27* / BE346477.1 / Glycine max cDNA clone Gm-c1042-1647 / 2.09 / 0.0317
28* / BW665639.1 / Cytochrome P450 monooxygenase CYP78A3p (CYP78A3) / 2.07 / 0.0201
29* / AW703792.1 / Lotus corniculatus var. japonicus genomic DNA, chromosome 5, clone:LjT30P03, TM0148 / 2.03 / 0.0184

aAsterisks indicate the 13 genes that are up-regulated by T3SS but not Nod-factor signaling.

bMicroarray fold changes in the roots of En1282 inoculated with USDA61 versus in the roots of En1282 inoculated with BerhcJ (Fig. 4A).