Table S2. the List of Complete Bacterial Genomes Examined in This Study

Table S2. the List of Complete Bacterial Genomes Examined in This Study

Table S2. The list of complete bacterial genomes examined in this study

Genome / Abbreveation
Proteobacteria - Alphaproteobacteria
Bradyrhizobium japonicum USDA 110 / bja
Bradyrhizobium sp. BTAi1 / bbt
Bradyrhizobium sp. ORS278 / bra
Rhodopseudomonas palustris BisA53 / rpe
Rhodopseudomonas palustris BisB5 / rpd
Rhodopseudomonas palustris BisB18 / rpc
Rhodopseudomonas palustris CGA009 / rpa
Rhodopseudomonas palustris HaA2 / rpb
Xanthobacter autotrophicus Py2 / xau
Azorhizobium caulinodans ORS 571 / azc
Jannaschia sp. CCS1 / jan
Granulibacter bethesdensis CGDNIH1 / gbe
Rhodospirillum rubrum ATCC 11170 / rru
Proteobacteria - Betaproteobacteria
Azoarcus sp. BH72 / azo
Ralstonia eutropha H16 / reh
Ralstonia metallidurans CH34 / rme
Ralstonia solanacearum GMI1000 / rso
Acidovorax avenae subsp. citrulli AAC00-1 / aav
Burkholderia cenocepacia AU 1054 / bcn
Burkholderia cepacia AMMD / bam
Burkholderia mallei ATCC 23344 / bma
Burkholderia pseudomallei K96243 / bps
Burkholderia sp. 383 / bur
Burkholderia thailandensis E264 / bte
Burkholderia vietnamiensis G4 / bvi
Burkholderia xenovorans LB400 / bxe
Chromobacterium violaceum ATCC 12472 / cvi
Methylibium petroleiphilum PM1 / mpe
Rhodoferax ferrireducens T118 / rfr
Polaromonas naphthalenivorans CJ2 / pna
Proteobacteria - Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida A449 / asa
Photorhabdus luminescens subsp. laumondii TTO1 / plu
Serratia proteamaculans 568 / spe
Shigella dysenteriae Sd197 / sdy
Citrobacter koseri ATCC BAA-895 / cko
Escherichia coli str. K-12 substr. MG1655 / eco
Marinobacter aquaeolei VT8 / maq
Salmonella enterica subsp. enterica serovar Typhi str. CT18 / sty
Salmonella typhimurium LT2 / stm
Shigella boydii Sb227 / sbo
Shigella sonnei Ss046 / ssn
Acinetobacter baumannii ATCC 17978 / aba
Marinomonas sp. MWYL1 / mmw
Xanthomonas axonopodis pv. citri str. 306 / xac
Xanthomonas campestris pv. campestris str. 8004 / xcc
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 / kpn
Pseudoalteromonas atlantica T6c / pat
Pseudomonas mendocina ymp / pmy
Pseudomonas aeruginosa PAO1 / pae
Pseudomonas fluorescens Pf-5 / pfl
Pseudomonas fluorescens PfO-1 / pfo
Pseudomonas stutzeri A1501 / psa
Pseudomonas putida KT2440 / ppu
Pseudomonas syringae pv. tomato str. DC3000 / pst
Psychromonas ingrahamii 37 / pin
Proteobacteria - Deltaproteobacteria
Myxococcus xanthus DK 1622 / mxa
Pelobacter carbinolicus DSM 2380 / pca
Pelobacter propionicus DSM 2379 / ppd
Firmicutes
Listeria welshimeri serovar 6b str. SLCC5334 / lwe
Listeria innocua Clip11262 / lin
Listeria monocytogenes EGD-e / lmo
Alkaliphilus metalliredigens QYMF / amt
Alkaliphilus oremlandii OhILAs / aoe
Clostridium difficile 630 / cde
Clostridium perfringens ATCC 13124 / cpe
Clostridium phytofermentans ISDg / cph
Clostridium tetani E88 / ctc
Clostridium acetobutylicum ATCC 824 / cac
Desulfitobacterium hafniense Y51 / dsy
Desulfotomaculum reducens MI-1 / drm
Symbiobacterium thermophilum IAM 14863 / sth
Enterococcus faecalis V583 / efa
Streptococcus sanguinis SK36 / ssa
Actinobacteria
Frankia alni ACN14a / fal
Streptomyces avermitilis MA-4680 / sma
Mycobacterium smegmatis str. MC2 155 / msm
Mycobacterium vanbaalenii PYR-1 / mva
Nocardia farcinica IFM 10152 / nfa
Rhodococcus sp. RHA1 / rha
Nocardioides sp. JS614 / nca
Acidobacteria
Solibacter usitatus Ellin6076 / sus
Bacteriodetes
Cytophaga hutchinsonii ATCC 33406 / chu
Fusobacteria
Fusobacterium nucleatum subsp. nucleatum ATCC 25586 / fnu
Chlorophlexi
Herpetosiphon aurantiacus ATCC 23779 / hau