Table S2. The list of complete bacterial genomes examined in this study

Genome / Abbreveation
Proteobacteria - Alphaproteobacteria
Bradyrhizobium japonicum USDA 110 / bja
Bradyrhizobium sp. BTAi1 / bbt
Bradyrhizobium sp. ORS278 / bra
Rhodopseudomonas palustris BisA53 / rpe
Rhodopseudomonas palustris BisB5 / rpd
Rhodopseudomonas palustris BisB18 / rpc
Rhodopseudomonas palustris CGA009 / rpa
Rhodopseudomonas palustris HaA2 / rpb
Xanthobacter autotrophicus Py2 / xau
Azorhizobium caulinodans ORS 571 / azc
Jannaschia sp. CCS1 / jan
Granulibacter bethesdensis CGDNIH1 / gbe
Rhodospirillum rubrum ATCC 11170 / rru
Proteobacteria - Betaproteobacteria
Azoarcus sp. BH72 / azo
Ralstonia eutropha H16 / reh
Ralstonia metallidurans CH34 / rme
Ralstonia solanacearum GMI1000 / rso
Acidovorax avenae subsp. citrulli AAC00-1 / aav
Burkholderia cenocepacia AU 1054 / bcn
Burkholderia cepacia AMMD / bam
Burkholderia mallei ATCC 23344 / bma
Burkholderia pseudomallei K96243 / bps
Burkholderia sp. 383 / bur
Burkholderia thailandensis E264 / bte
Burkholderia vietnamiensis G4 / bvi
Burkholderia xenovorans LB400 / bxe
Chromobacterium violaceum ATCC 12472 / cvi
Methylibium petroleiphilum PM1 / mpe
Rhodoferax ferrireducens T118 / rfr
Polaromonas naphthalenivorans CJ2 / pna
Proteobacteria - Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida A449 / asa
Photorhabdus luminescens subsp. laumondii TTO1 / plu
Serratia proteamaculans 568 / spe
Shigella dysenteriae Sd197 / sdy
Citrobacter koseri ATCC BAA-895 / cko
Escherichia coli str. K-12 substr. MG1655 / eco
Marinobacter aquaeolei VT8 / maq
Salmonella enterica subsp. enterica serovar Typhi str. CT18 / sty
Salmonella typhimurium LT2 / stm
Shigella boydii Sb227 / sbo
Shigella sonnei Ss046 / ssn
Acinetobacter baumannii ATCC 17978 / aba
Marinomonas sp. MWYL1 / mmw
Xanthomonas axonopodis pv. citri str. 306 / xac
Xanthomonas campestris pv. campestris str. 8004 / xcc
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 / kpn
Pseudoalteromonas atlantica T6c / pat
Pseudomonas mendocina ymp / pmy
Pseudomonas aeruginosa PAO1 / pae
Pseudomonas fluorescens Pf-5 / pfl
Pseudomonas fluorescens PfO-1 / pfo
Pseudomonas stutzeri A1501 / psa
Pseudomonas putida KT2440 / ppu
Pseudomonas syringae pv. tomato str. DC3000 / pst
Psychromonas ingrahamii 37 / pin
Proteobacteria - Deltaproteobacteria
Myxococcus xanthus DK 1622 / mxa
Pelobacter carbinolicus DSM 2380 / pca
Pelobacter propionicus DSM 2379 / ppd
Firmicutes
Listeria welshimeri serovar 6b str. SLCC5334 / lwe
Listeria innocua Clip11262 / lin
Listeria monocytogenes EGD-e / lmo
Alkaliphilus metalliredigens QYMF / amt
Alkaliphilus oremlandii OhILAs / aoe
Clostridium difficile 630 / cde
Clostridium perfringens ATCC 13124 / cpe
Clostridium phytofermentans ISDg / cph
Clostridium tetani E88 / ctc
Clostridium acetobutylicum ATCC 824 / cac
Desulfitobacterium hafniense Y51 / dsy
Desulfotomaculum reducens MI-1 / drm
Symbiobacterium thermophilum IAM 14863 / sth
Enterococcus faecalis V583 / efa
Streptococcus sanguinis SK36 / ssa
Actinobacteria
Frankia alni ACN14a / fal
Streptomyces avermitilis MA-4680 / sma
Mycobacterium smegmatis str. MC2 155 / msm
Mycobacterium vanbaalenii PYR-1 / mva
Nocardia farcinica IFM 10152 / nfa
Rhodococcus sp. RHA1 / rha
Nocardioides sp. JS614 / nca
Acidobacteria
Solibacter usitatus Ellin6076 / sus
Bacteriodetes
Cytophaga hutchinsonii ATCC 33406 / chu
Fusobacteria
Fusobacterium nucleatum subsp. nucleatum ATCC 25586 / fnu
Chlorophlexi
Herpetosiphon aurantiacus ATCC 23779 / hau