Table S1. the Test Set of 432 Full-Length Maize Proteins and the Predicted Results of Six

Table S1. The test set of 432 full-length maize proteins and the predicted results of six programs.

SwissProt database / Protein subcellular locations prediction programs
Accession number / Protein name / Subcellular location / iLoc-Plant / Plant-mPLoc / CELLO / WoLF PSORT / SherLoc 2 / Predotar
Subcellular location with experimental evidence
P00333 / Alcohol dehydrogenase 1 / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
P10593 / Albumin b-32 / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
O48556 / Soluble inorganic pyrophosphatase / Cytoplasm / Cytoplasm / Cytoplasm Mitochondrion / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
P93804 / Phosphoglucomutase, cytoplasmic 1 / Cytoplasm / Cytoplasm / Chloroplast / Chloroplast / Cytoplasm / Cytoplasm / Elsewhere
P25460 / 40S ribosomal protein S11 / Cytoplasm / Cytoplasm / Nucleus / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
P23345 / Superoxide dismutase [Cu-Zn] 4A / Cytoplasm / Cytoplasm / Chloroplast / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
Q41785 / Tubulin beta-8 chain / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Nucleus / Cytoplasm / Elsewhere
P21569 / Peptidyl-prolyl cis-trans isomerase / Cytoplasm / Cytoplasm
Nucleus / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
P11428 / Superoxide dismutase [Cu-Zn] / Cytoplasm / Cytoplasm / Chloroplast / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
P22275 / Tubulin alpha-3 chain / Cytoplasm / Cytoplasm / Mitochondrion
Nucleus / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
P18025 / Tubulin beta-1 chain / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Nucleus / Cytoplasm / Elsewhere
P04707 / Alcohol dehydrogenase 2 / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
P08440 / Fructose-bisphosphate aldolase, cytoplasmic isozyme / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
Q8RW98 / Protein BRICK1 / Cytoplasm / Nucleus / Cytoplasm / Chloroplast
Mitochondrion
Nucleus / Chloroplast
Extracellular / Cytoplasm / Elsewhere
P49105 / Glucose-6-phosphate isomerase, cytosolic / Cytoplasm / Nucleus / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
Q43272 / NADP-dependent glyceraldehyde-3-phosphate dehydrogenase / Cytoplasm / Cytoplasm / Chloroplast Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
P38560 / Glutamine synthetase root isozyme 2 / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
P24631 / 17.5 kDa class II heat shock protein / Cytoplasm / Cytoplasm / Chloroplast Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
P52580 / Isoflavone reductase homolog IRL / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Chloroplast / Cytoplasm / Elsewhere
P26301 / Enolase 1 / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
Q9FR39 / Profilin-5 / Cytoplasm / Cytoplasm / Chloroplast
Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
P25892 / Ribosome-inactivating protein 9 / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
P35081 / Profilin-1 / Cytoplasm / Cytoplasm / Chloroplast Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
P04711 / Phosphoenolpyruvate carboxylase 1 / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
Q41764 / Actin-depolymerizing factor 3 / Cytoplasm / Cytoplasm / Cytoplasm / Nucleus
Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
Q84TC2 / DIBOA-glucoside dioxygenase BX6 / Cytoplasm / Vacuole / Cytoplasm / Mitochondrion Cytoplasm / Cytoplasm: / Peroxisomal / Elsewhere
P38561 / Glutamine synthetase root isozyme 3 / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
P30792 / 2,3-bisphosphoglycerate-independent phosphoglycerate mutase / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
P25891 / Ribosome-inactivating protein 3 / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
P35082 / Profilin-2 / Cytoplasm / Cytoplasm / Chloroplast / Mitochondrion
Nucleus / Cytoplasm / Cytoplasm / Elsewhere
P35083 / Profilin-3 / Cytoplasm / Cytoplasm / Chloroplast / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
O22655 / Profilin-4 / Cytoplasm / Cytoplasm / Chloroplast
Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
P38559 / Glutamine synthetase root isozyme 1 / Cytoplasm / Cytoplasm / Chloroplast Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
P38562 / Glutamine synthetase root isozyme 4 / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
P38563 / Glutamine synthetase root isozyme 5 / Cytoplasm / Cytoplasm / Chloroplast Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
P33627 / Tubulin alpha-6 chain / Cytoplasm / Cytoplasm / Mitochondrion Nucleus / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
P18026 / Tubulin beta-2 chain / Cytoplasm / Cytoplasm / Cytoplasm Mitochondrion / Cytoplasm / Nucleus / Cytoplasm / Elsewhere
Q41782 / Tubulin beta-4 chain / Cytoplasm / Cytoplasm / Cytoplasm
Mitochondrion / Cytoplasm / Nucleus / Cytoplasm / Elsewhere
Q41783 / Tubulin beta-6 chain / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm
Chloroplast: / Cytoplasm / Elsewhere
Q41784 / Tubulin beta-7 chain / Cytoplasm / Cytoplasm / Cytoplasm Mitochondrion / Cytoplasm / Nucleus / Cytoplasm / Elsewhere
P42895 / Enolase 2 / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
P11428 / Superoxide dismutase [Cu-Zn] 2 / Cytoplasm / Cytoplasm / Chloroplast / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
Q43695 / Tubulin beta-3 chain / Cytoplasm / Cytoplasm / Cytoplasm Mitochondrion / Cytoplasm / Nucleus / Cytoplasm / Elsewhere
Q43697 / Tubulin beta-5 chain / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Nucleus / Cytoplasm / Elsewhere
Q9FUH9 / Microtubule-binding protein TANGLED1 / Cytoplasm / Mitochondrion / Chloroplast Nucleus / Nucleus / Nucleus / Cytoplasm / Elsewhere
Q02245 / Tubulin alpha-5 chain / Cytoplasm / Cytoplasm / Mitochondrion. Nucleus / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
P23346 / Superoxide dismutase [Cu-Zn] 4AP / Cytoplasm / Cytoplasm / Chloroplast / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
Q08275 / 17.0 kDa class II heat shock protein / Cytoplasm / Cytoplasm / Cytoplasm
Chloroplast / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
P24632 / 17.8 kDa class II heat shock protein / Cytoplasm / Cytoplasm / Chloroplast Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
O22424 / 40S ribosomal protein S4 / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Chloroplast
Cytoplasm / Cytoplasm / Elsewhere
P93805 / Phosphoglucomutase, cytoplasmic 2 / Cytoplasm / Cytoplasm / Chloroplast / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
P93836 / 4-hydroxyphenylpyruvate dioxygenase / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Cytoplasm / Elsewhere
P17788 / ribosomal protein L2, chloroplastic / Plastid / Plastid / Chloroplast / Mitochondrion / Cytoplasm / Cytoplasm / Elsewhere
P49079 / Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic / Plastid / Chloroplast / Chloroplast / Chloroplast
Mitochondrion / Mitochondrion / Mitochondrion / Mitochondrion
P25462 / Glutamine synthetase, chloroplastic / Plastid / Cytoplasm / Chloroplast Mitochondrion / Chloroplast / Chloroplast / Cytoplasm / Plastid
P06671 / Chlorophyll a-b binding protein, chloroplastic / Plastid / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Plastid
O81220 / Uroporphyrinogen decarboxylase, chloroplastic / Plastid / Cytoplasm / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Plastid
P27788 / Ferredoxin-3, chloroplastic / Plastid / Plastid / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Plastid
P41347 / Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic / Plastid / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Mitochondrion / Plastid
B6TN12 / Lipoyl synthase 1, chloroplastic / Plastid / Chloroplast / Chloroplast Nucleus / Chloroplast / Chloroplast / Mitochondrion / Elsewhere
P48190 / Maturase K / Plastid / Chloroplast / Chloroplast / Cell membrane / Nucleus / Cytoplasm / Elsewhere
Q41048 / Oxygen-evolving enhancer protein 3-1, chloroplastic / Plastid / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Plastid
O24578 / Adenylosuccinate synthetase, chloroplastic / Plastid / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Cytoplasm / Plastid
Q9ZT00 / Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic / Plastid / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Plastid
Q9SWI6 / 50S ribosomal protein L29, chloroplastic / Plastid / Chloroplast / Chloroplast / Nucleus
Mitochondrion
Chloroplast / Chloroplast / Chloroplast / Plastid
Q41738 / Thiamine thiazole synthase 1, chloroplastic / Plastid / Chloroplast / Chloroplast Mitochondrion Nucleus / Chloroplast / Chloroplast / Chloroplast / Plastid
Q94FY8 / Probable tocopherol cyclase, chloroplastic / Plastid / Chloroplast / Chloroplast / Lysosomal / Chloroplast / Cytoplasm / Plastid
P42057 / Outer plastidial Cell membrane protein porin / Plastid / Plastid / Mitochondrion / Chloroplast Mitochondrion / Cytoplasm / Mitochondrion / Elsewhere
P49086 / Phytoene dehydrogenase, chloroplastic/chromoplastic / Plastid / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Plastid
Q9ZTP4 / Zeta-carotene desaturase, chloroplastic/chromoplastic / Plastid / Chloroplast / Chloroplast / Mitochondrion / Chloroplast / Cytoplasm
Chloroplast / Plastid
P49235 / Beta-glucosidase, chloroplastic / Plastid / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Vacuole / Plastid
Q9M5P4 / Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic / Plastid / Chloroplast / Chloroplast / Mitochondrion
Chloroplast / Chloroplast / Chloroplast / Plastid
P05348 / Ribulose bisphosphate carboxylase small chain, chloroplastic / Plastid / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Plastid
Q84N49 / CRS2-associated factor 1, chloroplastic / Plastid / Chloroplast / Chloroplast / Nucleus / Chloroplast / Mitochondrion / Elsewhere
Q9FYT6 / Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic / Plastid / Chloroplast / Chloroplast / Mitochondrion / Cytoplasm / Cytoplasm
Nucleus / Plastid
P26259 / 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic / Plastid / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Plastid
P27787 / Ferredoxin-1, chloroplastic / Plastid / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Plastid
P23225 / Ferredoxin-dependent glutamate synthase, chloroplastic / Plastid / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Plastid
P43188 / Adenylate kinase, chloroplastic / Plastid / Chloroplast / Chloroplast / Chloroplast
Cytoplasm / Cytoplasm / Cytoplasm / _
P16243 / NADP-dependent malic enzyme, chloroplastic / Plastid / Plastid / Chloroplast / Chloroplast / Chloroplast / Cytoplasm / Plastid
P15719 / Malate dehydrogenase [NADP], chloroplastic / Plastid / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Mitochondrion / Plastid
Q195N6 / Pyruvate, phosphate dikinase regulatory protein, chloroplastic / Plastid / Chloroplast / Nucleus / Chloroplast / Chloroplast / Mitochondrion
Cytoplasm / Elsewhere
P08529 / 50S ribosomal protein L14, chloroplastic / Plastid / Chloroplast / Chloroplast / Chloroplast
Mitochondrion / Cytoplasm / Cytoplasm / Elsewhere
P09562 / DNA-directed RNA polymerase subunit alpha / Plastid / Chloroplast / Chloroplast Plastid / Nucleus / Cytoplasm / Cytoplasm / Elsewhere
P80680 / Ferredoxin-thioredoxin reductase, variable chain / Plastid / Plastid / Chloroplast / Chloroplast / Cytoplasm / Cytoplasm / -
P49133 / Triose phosphate/phosphate translocator, chloroplastic / Plastid / Chloroplast / Chloroplast / Cell membrane / Plastid / Chloroplast / Plastid
O24592 / 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic / Plastid / Chloroplast / Chloroplast Cytoplasm / Chloroplast
Cytoplasm / Chloroplast / Chloroplast / Plastid
P29036 / Ferritin-1, chloroplastic / Plastid / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Mitochondrion
Q08047 / 1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic / Plastid / Chloroplast / Chloroplast / Cytoplasm / Chloroplast / Vacuole
Mitochondrion / Mitochondrion
P55241 / Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic/amyloplastic / Plastid / Chloroplast / Chloroplast / Chloroplast / Cytoplasm / Chloroplast / Elsewhere
O23813 / Sulfite reductase [ferredoxin], chloroplastic / Plastid / Chloroplast / Chloroplast / Mitochondrion / Chloroplast / Cytoplasm / Elsewhere
P49080 / Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic / Plastid / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Cytoplasm / Elsewhere
Q84N48 / CRS2-associated factor 2, chloroplastic / Plastid / Chloroplast / Chloroplast / Nucleus / Chloroplast
Mitochondrion1 / Cytoplasm / Plastid
P29390 / Ferritin-2, chloroplastic / Plastid / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Mitochondrion
B6TRH4 / Riboflavin biosynthesis protein PYRD, chloroplastic / Plastid / Chloroplast / Chloroplast / Mitochondrion
Chloroplast / Chloroplast / Chloroplast
Cytoplasm / Plastid
P27789 / Ferredoxin-5, chloroplastic / Plastid / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Mitochondrion
P94044 / Ferredoxin-6, chloroplastic / Plastid / Chloroplast / Chloroplast / Chloroplast / Mitochondrion / Chloroplast / Plastid
K7WIZ6 / Riboflavin biosynthesis protein PYRR, chloroplastic / Plastid / Vacuole / Chloroplast / Chloroplast
Mitochondrion / Chloroplast / Cytoplasm / Plastid
Q41739 / Thiamine thiazole synthase 2, chloroplastic / Plastid / Chloroplast / Chloroplast / Chloroplast / Chloroplast
Mitochondrion / Chloroplast / Plastid
P27497 / Chlorophyll a-b binding protein M9, chloroplastic / Plastid / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Plastid
C0PN26 / Lipoyl synthase 2, chloroplastic / Plastid / Chloroplast / Chloroplast Nucleus
Peroxisome / Chloroplast
Mitochondrion / Chloroplast / Mitochondrion / Elsewhere
P41348 / Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic / Plastid / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Chloroplast / Elsewhere
Q07300 / ATP synthase delta chain, chloroplastic / Plastid / Chloroplast / Chloroplast / Mitochondrion
Chloroplast / Chloroplast / Mitochondrion / Mitochondrion
P46605 / Homeobox protein HOX1A / Nucleus / Nucleus / Nucleus / Nucleus / Nucleus / Nucleus / Elsewhere
P24345 / Homeotic protein knotted-1 / Nucleus / Nucleus / Nucleus / Nucleus / Nucleus / Nucleus / Elsewhere
Q67EU8 / DNA repair protein RAD51 homolog A / Nucleus / Nucleus / Nucleus / Cytoplasm / Cytoplasm / Nucleus / Elsewhere
P50158 / TATA-box-binding protein 1 / Nucleus / Nucleus / Nucleus / Nucleus / Nucleus / Nucleus / Elsewhere
O04003 / Protein LIGULELESS 1 / Nucleus / Nucleus / Nucleus / Nucleus / Nucleus / Nucleus / Elsewhere
P25209 / Nuclear transcription factor Y subunit B / Nucleus / Nucleus / Nucleus / Nucleus / Nucleus / Nucleus / Elsewhere
P24068 / Ocs element-binding factor 1 / Nucleus / Nucleus / Nucleus / Nucleus / Nucleus / Nucleus / Elsewhere
Q43266 / Proliferating cell nuclear antigen / Nucleus / Nucleus / Nucleus / Nucleus / Nucleus / Nucleus / Elsewhere
Q70UV1 / WUSCHEL-related homeobox 3A / Nucleus / Nucleus / Nucleus / Nucleus / Nucleus / Nucleus / Elsewhere
Q8LPU5 / DNA (cytosine-5)-methyltransferase 3 / Nucleus / Nucleus / Nucleus / Cytoplasm