Table S1 Name, Acronym and Accession Numbers of Begomoviruses Used for Sequence Comparisons

Table S1 Name, acronym and accession numbers of begomoviruses used for sequence comparisons and phylogenetic analysis

Virus name / Acronym / Accession Number (DNA-A) / Accession number (DNA-B)
Abutilon mosaic Brazil virus-[BR:BA] / AbMBV-[BR:BA] / FN434438 / FN434439
Abutilon mosaic virus - [Germany] / AbMV-[DE] / X15983 / -
Abutilon mosaic virus - [United States:Hawaii] / AbMV-[US:Haw] / U51137 / U51138
African cassava mosaicvirus - [Nigeria] / ACMV-[NG] / X17096 / X17095
Beancalicomosaicvirus -[Mexico:Sonora:1986] / BCaMV-[MX:Son:86] / AF110189 / AF110190
Cabbage leaf curl virus - [Jamaica:Douglas Castle:2005] / CabLCV-[JM:DC:05] / DQ178612 / n.a
Chino del tomate virus - Tomato [Mexico:Sinaloa IC:1983] / CdTV-To[MX:SinIC:83] / AF101476 / AF101478
Corchorus golden mosaic virus -[Vietnam:Hanoi:2005] / CoGMV-[VN:Han:05] / DQ641688 / DQ641689
Corchorus golden mosaic virus - [India:Barrackpore:2007] / CoGMV-[IN:Bar:07] / EU636712 / FJ455448
Corchorus golden mosaic virus - [India:Barrackpore 2:2009] / CoGMV-[IN:Bar2:09] / FJ790326 / FJ790327
Corchorus golden mosaic virus - [India:Bahraich:2008] / CoGMV-[IN:Bah:08] / FJ463902 / FJ463901
Corchorus golden mosaic virus - [India:Barrackpore 2:2008] / CoGMV-[IN:Bar2:08] / GQ183863 / GQ183864
Corchorus mottle virus- -[BR:PE:SJM:08] / CoMoV-[BR:PE:SJM:08] / JQ805781 / JQ805780
Corchorus yellow spot virus - [Mexico:Yucatan:2005] / CoYSV-[MX:Yuc:05] / DQ875868 / DQ875869
Corchorus yellow vein Vietnam virus - [Vietnam:Hoa Binh:2000] / CoYVV-[VN:Hoa:00] / AY727903 / AY727904
Cotton leaf crumple virus - Arizona [United States:Arizona:1991] / CLCrV-AZ[US:Ari:91] / AY083350 / n.a
Cucurbit leaf crumple virus - [United States:California:1998] / CuLCrV-[US:Cal:98] / AF224760 / AF224761
Desmodium leaf distortion virus - [Mexico:Yucatan:2005] / DesLDV-[MX:Yuc:05] / DQ875870 / DQ875871
Euphorbiamosaicvirus - [Mexico:Jalasco:Pepper:2005] / EuMV-[MX:Jal:Pep:05] / DQ520942 / n.a
Malvastrumyellowmosaic Jamaica virus - [Jamaica:9bA43:2003] / MaYMJV-[JM:9bA43:03] / FJ600482 / -
Okra mottle virus - [Brazil:6319:2008] / OMoV-[BR:6319:08] / EU914817 / -
Okramottlevirus - [Brazil:SantoAntonio de Goias 8:Soy:2008] / OMoV-[BR:Sag8:Sb:08] / FJ686695 / -
OkrayellowmosaicMexicovirus - [Sida] / OYMMV-[Sida] / GU990613 / -
Okra yellow mosaic Mexico virus - [USA:Texas] / OYMMV-[USA:Texas] / HM035059 / HM035060
Okrayellowmottle Iguala virus - [Mexico:Iguala] / OYMoIgV-[MX:Igu] / AY751753 / n.a
Pepper golden mosaic virus - United States [United States:Distortion:1987] / PepGMV-US[US:Dis:87] / AY928514 / AY928515
PotatoyellowmosaicPanamavirus - [Panama:Divisa:Tomato:1996] / PYMPV-[PA:Div:Tom:96] / Y15034 / Y15033
Rhynchosia golden mosaic Yucatan virus - [Mexico:Desmodium:C6:2008] / RhGMSiV-[MX:Desm:C6:08] / GQ352453 / n.a
Sida common mosaicvirus - [Brazil:Coi4:2007] / SiCMV-[BR:Coi4:07] / EU710751 / n.a
Sida goldenmosaic Florida virus – [Cuba:Havana:Malvastrum:123:2009] / SiGMFlV - [CU:Hav:Mal:123:09] / HM359015 / -
Sida goldenmosaic Honduras virus - [Honduras] / SiGMHV-[HN] / Y11097 / Y11098
Sida golden mosaic virus - [United States:Florida] / SiGMV-[US:Flo] / AF049336 / AF039841
Sida golden mottle virus - [USA:Bran:Flo] / SiGMoV-[USA:Bran:Flo] / GU997691 / GU997692
Sida micranthamosaicvirus - [Brazil:A2B2] / SiMMV-[BR:A2B2] / AJ557451 / AJ557453
Sida micranthamosaicvirus – [Mato Grosso do Sul2:2007] / SiMMV-[BR:MGS:2:2007] / FN436005 / FN436006
Sida mosaic Brazil virus / SiMBV-[BR] / FN436001 / FN436002
Sida mottlevirus - Micrantha [Brazil:A1B3] / SiMoV-Mic[BR:A1B3] / AJ557450 / AJ557454
Sida mottlevirus - Micrantha [Brazil:São Paulo 77:2008] / SiMoV-Mic[BR:SP77:08] / FN557522 / FN557523
Sida mottlevirus - Rhombifolia [Brazil:Vicosa 1:1999] / SiMoV-Rho[BR:Vic1:99] / AY090555 / n.a
Sida yellow leaf curl virus - [Brazil:Coi3:2007] / SiYLCV-[BR:Coi3:07] / EU710750 / n.a
Sida yellowmosaicvirus - [Brazil:Vicosa 2:1999] / SiYMV-[BR:Vic2:99] / AY090558 / n.a
Sida yellowmosaicYucatanvirus - [Mexico:Yucatan:2005] / SiYMYuV-[MX:Yuc:05] / DQ875872 / DQ875873
Soybean blistering mosaic virus - [Argentina:NOA:2005] / SbBMV-[AR:NOA:05] / EF016486 / n.a
Tobacco leaf curl Cuba virus - [Cuba:Taguasco:2005] / TbLCuCV-[CU:Tag:05] / AM050143 / n.a
Tobacco leaf rugose virus - [Cuba:Havana:2007] / TbLRV-[CU:Hav:07] / AJ488768 / n.a
Tomato chlorotic mottle virus - Bahia [Brazil:Seabra 1:1996] / ToCMoV-BA-[BR:Sea1:96] / AF490004 / AF491306
Tomato common mosaic virus - [Brazil:Coi22:2007] / ToCMMV-[BR:Coi22:07] / EU710754 / EU710755
Tomato golden mosaic virus - [Brazil:Common:1984] / TGMV-[BR:Com:84] / K02029 / K02030
Tomato golden mottle virus - [Mexico:Rioverde:2005] / ToGMoV-[MX:Rio:05] / EF501976 / n.a
Tomato leaf distortion virus - [Brazil:Pda4:2005] / ToLDV-[BR:Pda4:05] / EU710749 / n.a
Tomatomildmosaicvirus - [Brazil:Pda 58:2005] / ToMMV-[BR:Pda58:05] / EU710752 / EU710753
TomatomildyellowleafcurlAraguavirus - [Venezuela:10:2003] / ToMYLCV-[VE:10:03] / AY927277 / EF547938
Tomato mottle Taino virus - [Cuba] / ToMoTaV-[CU] / AF012300 / AF012301
Tomato mottle virus - [PR:2004] / ToMoV-[PR:04] / AY965900 / -
Tomatorugosemosaicvirus - [Brazil:Uberlandia 1:1996] / ToRMV-[BR:Ube1:96] / AF291705 / -
Tomatosevereleafcurlvirus – Guatemala [Mexico:Rioverde 1:2005] / ToSLCV-GT[MX:Rio1:05] / DQ347946 / n.a
Tomato yellow distortion leaf virus - [Cuba:Nicotiana benthamiana:EF5N:2007] / ToYDLV-[CU:Nben:EF5N:07] / n.a / FJ999999
Tomato yellow distortion leaf virus - [Cuba:5E17:2007] / ToYDLV-[CU:5E17:07] / FJ174698 / n.a
Tomato yellow spot virus - [Brazil:Bicas 2:1999] / ToYSV-[BR:Bic2:99] / DQ336350 / DQ336351
Wissadula golden mosaic virus -[Jamaica:St Thomas:2005] / WGMV-[JM:StT:05] / DQ395343 / -

a-: Not used

bn.a: Not available