Supplemental Table 1Online The putative target genes that were activated by 9lowPi-responsiveTaMIRs
Name of TaMIRs / TaMIR sequence(3’ to 5’ ) / Tentative consensus (TC) hit / Score
between TaMIR and TC / Pairing position sequence of TC to the TaMIR
(5’-3’ ) / Putative function of target gene
TaMIR159b / gucucgagggaaguuagguuu / CA483944 / 1.5 / gggagcucccuucaguccaag 96-116 / Annotation not available
CA679118 / 2 / caaaguucccuucaauucaaa174-194 / Annotation not available
TC229221 / 2 / cagagcaccuuucgauccaag346-366 / Nucleotide-binding leucine-rich-repeat protein 1
CD872441 / 2.5 / uagagcucccuccaauccaua 350-370 / LP09339p (D. melanogaster)
TC194473 / 2.5 / uggagcucccuucacuccaag1227-1247 / Transcription factor Myb3
TC226429 / 2.5 / uggagcucccuucacuccaau569-589 / Transcription factor Myb3
CA484819 / 2.5 / uugagcuccuuucgguccaaa229-249 / Annotation not available
CD898447 / 2.5 / uagggcuccuuuugauucaaa466-486 / Annotation not available
CA593588 / 3 / cggagcccccuucaaaccaaa58-78 / Annotation not available
TC199656 / 3 / gcgagcucccuucgaaccaaa95-115 / RE13473p
TC224747 / 3 / uggagcucccuucccuccaaa510-530 / Cell cycle associated protein Mob1
CA597816 / 3 / ugaagcuccuuugaauccaaa330-350 / Actin
CK168936 / 3 / uugggcuccauucgauccaaa433-453 / Annotation not available
CK212140 / 3 / gggggcugccuucaguucaaa35-55 / H2B2 Histone H2B.2
TaMIR167 / aucuaguacgaccgucgaagu / TC216640 / 2 / uugaucauacuggcagcuucc342-362 / Annotation not available
TC195542 / 2.5 / uagaucaggcuggcagcuugu41-61 / Auxin response factor 8
TC219407 / 3 / uagaucaugcuagcauuuucc358-378 / Ulp1 protease-like
TC200974 / 3 / cagcucaugaugguaguuuca449-469 / Annotation not available
TC217232 / 3 / gagcuccugcugguggcuuca85-105 / Protein C21orf124
TaMIR399 / No hit identified
TaMIR408 / cggucccuucuccgucacguc / TC221356 / 0 / cccagggaagaggcagugcag94-114 / (Basic blue protein, Plantacyanin)
TC222013 / 1 / gccagggcagaggcagugcag622-642 / (Basic blue protein, Plantacyanin)
TC197987 / 1 / cucagggaagaggcagugcgg174-194 / (Basic blue protein, Plantacyanin)
TC223076 / 1.5 / gccaggguggaggcagugcag724-744 / Blue copper protein precursor
CA619179 / 2 / cucagggaagaggcagugcga10-30 / Basic Blue Copper Protein
TC212717 / 2 / gcccgggaggaggcggugcac358-378 / Allene oxide synthase
TC223077 / 2.5 / gacaggguggaggcagugcag708-728 / Blue copper protein precursor
BE426011 / 2.5 / gucguggaggaggcagugcac147-167 / glycine rich protein
CA722644 / 2.5 / gccacggaggaggcgguguac226-246 / hyperpolarization activated cyclic nucleotide-gated potassium channel
TC228772 / 2.5 / gucguggaggaggcagugcac77-97 / Predicted permease
TC201215 / 3 / gccggggaagagggaguggaa506-526 / Cyclin-dependent protein kinase
TC224702 / 3 / gcuagugaagaggccgugcau371-391 / 1,4-beta-cellobiosidase
TC226814 / 3 / gccggggaggaggcagagcgg246-266 / Protamine I
TaMIR1122 / No hit identified
TaMIR1125 / ggcggcgucaaccagagcaaccaa / TC215459 / 0 / agaccgcaguuggucucguugguu37-60 / Annotation not available
CA614252 / 0.5 / ucgucgcaguuggucucguuggua312-335 / Annexin-like protein
CK196934 / 1.5 / ccgccgcaguuggucucauugguu213-236 / Annotation not available
BQ242235 / 3 / cccccgcgguugcucucguugcug140-163 / O. sativa B1015E06.6
TC213732 / 3 / ccguggcaguuggugucguugaug12-35 / A. thaliana At3g54800
CD454825 / 3 / uugccguagucguucuuguuggug577-600 / plasma membrane H+-ATPase
TC192747 / 3 / uggccgagguuggcuucguuggug702-725 / Ferredoxin-sulfite reductase
TaMIR1135 / aggcaagccuuaaugaacagcguc / TC203743 / 0.5 / uccguucggaauuacuugucucgg953-976 / Hydroxyproline-rich glycoprotein
TC207344 / 0.5 / uccguuuggaauuacuugucguag791-814 / Sucrase-like protein
TC218503 / 0.5 / uccguucggaauuacuugucucga948-971 / Delta 1-pyrroline-5-carboxylate synthetase
CA733683 / 1 / uccauuccgaauuacuugucgcag445-468 / Auxin-induced protein
TC205687 / 1 / uccguuccgaauuacuugucguag81-104 / Dicarboxylate/tricarboxylate carrier
TC208170 / 1 / uccguuccgaauuacuugucgcac2028-2051 / Squalene epoxidase
TC231694 / 1 / uccguucggaauuacaugucguag132-155 / T cell receptor beta chain
CD931690 / 1.5 / uccguuccgaauuacuugucuuag87-110 / cytochrome P450
TC208489 / 1.5 / uccguccggaauuacuuguuguag1953-1976 / Branched-chain-amino-acid aminotransferase
TC219522 / 2 / uccguccggaguuacuugucucga926-949 / MtN19 protein precursor
TC220588 / 2.5 / uccguccggaaauacuugucgaag1389-1412 / GF-beta receptor-interacting protein
TC225300 / 2.5 / uccguccggaaauacuugucggag2734-2757 / SET domain protein
CK196398 / 2.5 / uccguccggaaauacuugucggaa55-78 / Peptide chain release factor subunit 1 (eRF1)
TC189249 / 2.5 / uccguucggaauuacucguccaug763-786 / NAC2 protein-like
BJ311657 / 3 / uccguuccaaauuacucgucgcag142-165 / Transcription factor (PWWP domain)
TC205686 / 3 / uccguucuaaauuacucgucgcag558-581 / Oxoglutarate/malate translocator-like
TC224782 / 3 / uccgucccgaauuacnugucgcag1381-1404 / Membrane protein (AT5g07250)
TC191006 / 3 / uccguuugaaauuaccugucucgg384-407 / Wound induced protein
CA730358 / 3 / uccguccggaaauacuuguucuaa127-150 / Zinc finger transcription factor ZFP2
TaMIR1136 / aucuauguagguauggacgcuguu / TC205602 / 0 / uagauacauccauaccugcgacaa1292-1315 / EBNA-1
TC217858 / 0 / uagauacauccauaccugcgacaa317-340 / Palmitoyl-protein thioesterase-like
TC228984 / 0 / uagauacauccauaccugcgacaa320-343 / Atfp6-like protein
TC203120 / 1 / uagauacacccauaccugcgacaa568-591 / Ferritin
BJ311657 / 1.5 / uagauacauccauaccuacgacaa196-219 / Transcription factor (PWWP domain)
TC226022 / 1.5 / uagauacauucauacuugugacaa792-815 / Histone deacetylase HD2-like
TC205686 / 2 / uaaauauauccauaccuacgacaa612-635 / Dicarboxylate/tricarboxylate carrier
TC214110 / 2 / uagauacauucauuucugcgacaa362-385 / 26S proteosome regulatory subunit
TC218503 / 2 / uagaugcauccauuucugcgacaa1002-1025 / Delta 1-pyrroline-5-carboxylate synthetase
TC219522 / 2 / uagauauauccauuucugcgacaa980-1003 / MtN19 protein
TC205614 / 2 / uagauacauccauuuuugcgacga164-187 / Cold acclimation protein WCOR413
TC205687 / 2 / uagauacaucuauuucugcgacga135-158 / Dicarboxylate/tricarboxylate carrier
TC206486 / 2 / agcauucauccaucccugcgacag1275-1298 / Phosphatidylglycerol specific phospholipase C
TC205643 / 2.5 / uagauacauccauaccug-gacaa1031-1053 / Proline-rich protein precursor
TC205620 / 2.5 / uagauacauccauuccuccgacaa38-61 / GPI-anchored protein
TC189249 / 2.5 / uagauacauccauuuuugugacaa818-841 / NAC2 protein-like
CA733683 / 2.5 / uaaauacauccauuucugugacga499-522 / Auxin-induced protein
TC201383 / 2.5 / uggauacauccauuucugugauaa567-590 / Activated protein kinase C receptor
TC207344 / 3 / uagauacauccauuucugagacaa845-868 / Sucrase-like protein
TC209849 / 3 / uagauacauccauuuucgcgacaa495-518 / AT3g20870/MOE17-16
TC203743 / 3 / uagauacauccauuuucgcgacga1007-1030 / Hydroxyproline-rich glycoprotein
TC190466 / 3 / ucgaugcguucuuaccugcgacca650-673 / Soluble inorganic pyrophosphatase
CA610458 / 3 / gagauauauccagauuugugacga166-189 / Acetohydroxyacid synthase
TaMIR1139 / acaaugaucacauacaaugaga / BQ903908 / 0 / uguuacuaguguauguuacucu605-626 / Annotation not available
BE499743 / 1.5 / uguuacuagucuauguuacuac223-244 / Annotation not available
BQ169772 / 1.5 / uguuacuagucuauguuacuac429-450 / Annotation not available
CB412183 / 1.5 / uguuacuaguguguguuguuug356-377 / AA nucleocapsid protein
TC226699 / 2 / uguuauuagucuauguuacuac396-417 / GM02602p
TC222173 / 2.5 / uguuacuacuuuauguuacuac1604-1625 / At3g62600/F26K9-30
TC208014 / 2.5 / ucuuguugguguauguuacuca584-605 / Annotation not available
TC213949 / 2.5 / aauuacuagaguauauugcucu678-699 / Annotation not available
CK210194 / 3 / uguuacuagucuaugucacuac374-395 / Annotation not available
TC191709 / 3 / uguuauuagucuauauuacuau1557-1578 / Rab28 protein
TC228086 / 3 / uguuauuagucuauauuacuau602-623 / NADH dehydrogenase subunit 6
TC191959 / 3 / gguugcugguguauguugguca213-234 / Phosphate/phosphoenolpyruvate translocato
Note: Bases with red colors are mismatched to the TaMIRs, whereas the bases with green colors are wobbled through base-pairing with TaMIRs by G:U and U:G.