Supplementary Table S7. Genes Bearing Rarβ Binding Sites and Which Expression Was Significantly

Supplementary Table S7. Genes bearing RARβ binding sites and which expression was significantly altered in transcriptomic analyses of the RARβ-/-NAc shell. The following criteria were applied: 0.80≥fold change (FC) ≥1.20, p-value ≤0.05

Gene symbol / Gene name / FC
Rarβ-/-/WT
Abcb9 / ATP-binding cassette, sub-family B (MDR/TAP), member 9 / 0.772
Abhd14a / abhydrolase domain containing 14A / 1.443
Actn2 / actinin alpha 2 / 0.783
Acvr2a / activin receptor IIA / 1.246
Acy1 / aminoacylase 1 / 0.753
Adamts3 / a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3 / 0.654
Adora1 / adenosine A1 receptor / 0.597
Ankrd33b / ankyrin repeat domain 33B / 0.746
Arid5b / AT rich interactive domain 5B (MRF1-like) / 1.277
Astn2 / astrotactin 2 / 0.716
Azin1 / antizyme inhibitor 1 / 0.792
B3galt5 / UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5 / 0.665
Baalc / brain and acute leukemia, cytoplasmic / 0.580
Bag5 / BCL2-associated athanogene 5 / 0.740
Cacna2d3 / calcium channel, voltage-dependent, alpha2/delta subunit 3 / 0.782
Camk1g / calcium/calmodulin-dependent protein kinase I gamma / 1.595
Cbfa2t3 / core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human) / 1.242
Ccdc141 / coiled-coil domain containing 141 / 0.792
Cdc25b / cell division cycle 25 homolog B (S. pombe) / 1.231
Cdh13 / cadherin 13 / 1.423
Cdh7 / cadherin 7, type 2 / 0.765
Cdh8 / cadherin 8 / 0.739
Cdkl4 / cyclin-dependent kinase-like 4 / 1.301
Chl1 / cell adhesion molecule with homology to L1CAM / 1.308
Chrm4 / cholinergic receptor, muscarinic 4 / 0.793
Cmbl / carboxymethylenebutenolidase-like (Pseudomonas) / 0.627
Cnr1 / cannabinoid receptor 1 (brain) / 1.258
Cntn5 / contactin 5 / 0.671
Cntn6 / contactin 6 / 1.313
Cobl / cordon-bleu / 1.272
Col9a3 / collagen, type IX, alpha 3 / 1.213
Coq10b / coenzyme Q10 homolog B (S. cerevisiae) / 0.794
Coro2a / coronin, actin binding protein 2A / 1.210
Cpn1 / carboxypeptidase N, polypeptide 1 / 1.211
Cpne8 / copine VIII / 0.784
Cspp1 / centrosome and spindle pole associated protein 1 / 0.797
Cxcl13 / chemokine (C-X-C motif) ligand 13 / 0.298
Cxxc4 / CXXC finger 4 / 0.680
Dach1 / dachshund 1 (Drosophila) / 1.233
Dbc1 / deleted in bladder cancer 1 (human) / 0.616
Dgkg / diacylglycerol kinase, gamma / 0.736
Dhrs3 / dehydrogenase/reductase (SDR family) member 3 / 0.684
Dlgap1 / discs, large (Drosophila) homolog-associated protein 1 / 1.283
Dnahc6 / dynein, axonemal, heavy chain 6 / 1.340
Dock10 / dedicator of cytokinesis 10 / 1.358
Dpy19l1 / dpy-19-like 1 (C. elegans) / 0.638
Dpy19l3 / dpy-19-like 3 (C. elegans) / 1.436
Dscaml1 / Down syndrome cell adhesion molecule like 1 / 1.202
Dynlt1b / dynein light chain Tctex-type 1B / 0.724
Ebf1 / early B cell factor 1 / 2.259
Enc1 / ectodermal-neural cortex 1 / 1.247
Epb4.1 / erythrocyte protein band 4.1 / 0.756
Ephb6 / Eph receptor B6 / 0.756
Esr1 / estrogen receptor 1 (alpha) / 1.376
Etl4 / enhancer trap locus 4 / 1.446
Ext1 / exostoses (multiple) 1 / 1.213
Fabp5 / fatty acid binding protein 5, epidermal / 0.756
Fam105a / family with sequence similarity 105, member A / 0.792
Fam135b / family with sequence similarity 135, member B / 0.745
Fam163a / family with sequence similarity 163, member A / 0.730
Fam163b / family with sequence similarity 163, member B / 1.623
Fam198b / family with sequence similarity 198, member B / 1.247
Fam19a5 / family with sequence similarity 19, member A5 / 1.235
Fam40b / family with sequence similarity 40, member B / 0.763
Fgf18 / fibroblast growth factor 18 / 0.798
Fgf9 / fibroblast growth factor 9 / 0.595
Fggy / FGGY carbohydrate kinase domain containing / 0.774
Fhit / fragile histidine triad gene / 1.848
Fig4 / FIG4 homolog (S. cerevisiae) / 0.641
Flrt2 / fibronectin leucine rich transmembrane protein 2 / 0.709
Fmnl1 / formin-like 1 / 1.236
Fndc5 / fibronectin type III domain containing 5 / 0.766
Foxl2 / forkhead box L2 / 1.229
Fstl1 / follistatin-like 1 / 1.230
Gabrg3 / gamma-aminobutyric acid (GABA) A receptor, subunit gamma 3 / 0.781
Gc / group specific component / 0.704
Gda / guanine deaminase / 1.239
Gja5 / gap junction protein, alpha 5 / 0.735
Glo1 / glyoxalase 1 / 1.294
Gpr158 / G protein-coupled receptor 158 / 0.789
Gpr88 / G-protein coupled receptor 88 / 0.773
Gprin3 / GPRIN family member 3 / 0.570
Grm8 / glutamate receptor, metabotropic 8 / 1.484
Gsta3 / glutathione S-transferase, alpha 3 / 1.284
Gucy1a3 / guanylate cyclase 1, soluble, alpha 3 / 0.689
H2afx / H2A histone family, member X / 1.211
Heg1 / HEG homolog 1 (zebrafish) / 0.777
Hpse2 / heparanase 2 / 1.218
Hsf4 / heat shock transcription factor 4 / 1.279
Hspa8 / heat shock protein 8 / 0.758
Htr1b / 5-hydroxytryptamine (serotonin) receptor 1B / 1.254
Hydin / HYDIN, axonemal central pair apparatus protein / 1.206
Il3ra / interleukin 3 receptor, alpha chain / 1.356
Impg1 / interphotoreceptor matrix proteoglycan 1 / 0.795
Inf2 / inverted formin, FH2 and WH2 domain containing / 0.737
Itga11 / integrin alpha 11 / 0.790
Itga9 / integrin alpha 9 / 0.743
Ivns1abp / influenza virus NS1A binding protein / 0.635
Jmjd8 / jumonji domain containing 8 / 1.292
Kcnh1 / potassium voltage-gated channel, subfamily H (eag-related), member 1 / 0.671
Kcnh2 / potassium voltage-gated channel, subfamily H (eag-related), member 2 / 0.747
Kcnip1 / Kv channel-interacting protein 1 / 0.360
Kcnk2 / potassium channel, subfamily K, member 2 / 0.594
Krt9 / keratin 9 / 0.761
Larp4 / La ribonucleoprotein domain family, member 4 / 0.778
Lgr4 / leucine-rich repeat-containing G protein-coupled receptor 4 / 0.773
Lingo2 / leucine rich repeat and Ig domain containing 2 / 1.334
Lipe / lipase, hormone sensitive / 0.776
Lmx1b / LIM homeobox transcription factor 1 beta / 1.213
Lphn2 / latrophilin 2 / 1.297
Lrrc10b / leucine rich repeat containing 10B / 0.643
Man1a / mannosidase 1, alpha / 1.327
March4 / membrane-associated ring finger (C3HC4) 4 / 1.211
Mark1 / MAP/microtubule affinity-regulating kinase 1 / 0.754
Mchr1 / melanin-concentrating hormone receptor 1 / 0.587
Mfge8 / milk fat globule-EGF factor 8 protein / 0.783
Mgst1 / microsomal glutathione S-transferase 1 / 0.767
Mical2 / microtubule associated monoxygenase, calponin and LIM domain containing 2 / 1.365
Mme / membrane metallo endopeptidase / 0.340
Mpped2 / metallophosphoesterase domain containing 2 / 0.778
Mtx2 / metaxin 2 / 0.761
Myo16 / myosin XVI / 0.669
Myo18b / myosin XVIIIb / 1.211
Myo3b / myosin IIIB / 2.053
Myo5b / myosin VB / 1.504
Nefm / neurofilament, medium polypeptide / 0.504
Nkain3 / Na+/K+ transporting ATPase interacting 3 / 1.371
Npas2 / neuronal PAS domain protein 2 / 0.774
Npffr2 / neuropeptide FF receptor 2 / 0.678
Nrgn / neurogranin / 1.352
Nt5e / 5' nucleotidase, ecto / 0.576
Ntng1 / netrin G1 / 1.382
Nuak1 / NUAK family, SNF1-like kinase, 1 / 1.265
Nup93 / nucleoporin 93 / 0.791
Nxph3 / neurexophilin 3 / 1.351
Odz4 / odd Oz/ten-m homolog 4 (Drosophila) / 0.718
Pard3 / par-3 (partitioning defective 3) homolog (C. elegans) / 0.787
Pcdh11x / protocadherin 11 X-linked / 1.318
Pcdh17 / protocadherin 17 / 0.728
Pde10a / phosphodiesterase 10A / 0.727
Pde11a / phosphodiesterase 11A / 1.245
Pde4b / phosphodiesterase 4B, cAMP specific / 0.760
Pdzrn3 / PDZ domain containing RING finger 3 / 1.264
Pitpnm3 / PITPNM family member 3 / 1.739
Plch2 / phospholipase C, eta 2 / 1.253
Plcxd1 / phosphatidylinositol-specific phospholipase C, X domain containing 1 / 1.279
Pld5 / phospholipase D family, member 5 / 0.520
Plekhf2 / pleckstrin homology domain containing, family F (with FYVE domain) member 2 / 0.736
Plxdc1 / plexin domain containing 1 / 1.214
Plxdc2 / plexin domain containing 2 / 1.327
Plxnd1 / plexin D1 / 1.258
Poc1a / POC1 centriolar protein homolog A (Chlamydomonas) / 1.237
Ppp1r11 / protein phosphatase 1, regulatory (inhibitor) subunit 11 / 1.349
Pptc7 / PTC7 protein phosphatase homolog (S. cerevisiae) / 0.772
Prkg1 / protein kinase, cGMP-dependent, type I / 1.511
Ptpn13 / protein tyrosine phosphatase, non-receptor type 13 / 0.694
Ptprm / protein tyrosine phosphatase, receptor type, M / 0.649
Rab27a / RAB27A, member RAS oncogene family / 0.649
Rab3b / RAB3B, member RAS oncogene family / 0.574
Rarb / retinoic acid receptor, beta / 0.274
Rasd2 / RASD family, member 2 / 0.735
Rasgef1c / RasGEF domain family, member 1C / 0.768
Rbck1 / RanBP-type and C3HC4-type zinc finger containing 1 / 0.707
Rbms1 / RNA binding motif, single stranded interacting protein 1 / 0.736
Reln / reelin / 1.592
Rem2 / rad and gem related GTP binding protein 2 / 0.791
Rgnef / Rho-guanine nucleotide exchange factor / 1.371
Rgs6 / regulator of G-protein signaling 6 / 1.234
Rgs9 / regulator of G-protein signaling 9 / 0.748
Rnf144b / ring finger protein 144B / 1.240
Robo2 / roundabout homolog 2 (Drosophila) / 1.308
Rod1 / ROD1 regulator of differentiation 1 (S. pombe) / 1.214
Rpp25 / ribonuclease P 25 subunit (human) / 0.771
Sc4mol / sterol-C4-methyl oxidase-like / 0.780
Scarb1 / scavenger receptor class B, member 1 / 0.653
Scn4b / sodium channel, type IV, beta / 0.510
Scyl3 / SCY1-like 3 (S. cerevisiae) / 0.792
Sema3a / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A / 0.672
Sema3c / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C / 0.766
Sema7a / sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A / 0.790
Serpina9 / serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9 / 0.612
Sez6l / seizure related 6 homolog like / 1.278
Sgcd / sarcoglycan, delta (dystrophin-associated glycoprotein) / 1.398
Sgk1 / serum/glucocorticoid regulated kinase 1 / 1.245
Sh2d6 / SH2 domain containing 6 / 1.220
Sh3bp4 / SH3-domain binding protein 4 / 1.307
Sh3pxd2a / SH3 and PX domains 2A / 0.773
Slc16a3 / solute carrier family 16 (monocarboxylic acid transporters), member 3 / 0.696
Slc20a1 / solute carrier family 20, member 1 / 0.776
Slc24a4 / solute carrier family 24 (sodium/potassium/calcium exchanger), member 4 / 0.534
Slc25a33 / solute carrier family 25, member 33 / 0.654
Slc35d3 / solute carrier family 35, member D3 / 0.645
Slc37a1 / solute carrier family 37 (glycerol-3-phosphate transporter), member 1 / 0.757
Slc4a4 / solute carrier family 4 (anion exchanger), member 4 / 0.695
Slit3 / slit homolog 3 (Drosophila) / 0.711
Slmap / sarcolemma associated protein / 0.758
Spa17 / sperm autoantigenic protein 17 / 0.799
Spint1 / serine protease inhibitor, Kunitz type 1 / 0.312
Spry2 / sprouty homolog 2 (Drosophila) / 0.634
Srgap1 / SLIT-ROBO Rho GTPase activating protein 1 / 0.669
Srxn1 / sulfiredoxin 1 homolog (S. cerevisiae) / 0.774
Stac2 / SH3 and cysteine rich domain 2 / 1.359
Stra6 / stimulated by retinoic acid gene 6 / 0.497
Strn / striatin, calmodulin binding protein / 0.600
Stxbp6 / syntaxin binding protein 6 (amisyn) / 1.249
Synm / synemin, intermediate filament protein / 1.247
Synpr / synaptoporin / 1.338
Syt6 / synaptotagmin VI / 0.796
Tac1 / tachykinin 1 / 0.752
Tbc1d20 / TBC1 domain family, member 20 / 0.683
Tbc1d4 / TBC1 domain family, member 4 / 1.493
Tbc1d8 / TBC1 domain family, member 8 / 0.651
Tcerg1l / transcription elongation regulator 1-like / 0.784
Tcp1 / t-complex protein 1 / 1.203
Tec / tec protein tyrosine kinase / 0.659
Tgfa / transforming growth factor alpha / 0.736
Thrb / thyroid hormone receptor beta / 0.719
Tiparp / TCDD-inducible poly(ADP-ribose) polymerase / 0.722
Tle4 / transducin-like enhancer of split 4, homolog of Drosophila E(spl) / 0.789
Tmeff2 / transmembrane protein with EGF-like and two follistatin-like domains 2 / 1.420
Tmem102 / transmembrane protein 102 / 1.213
Tmod1 / tropomodulin 1 / 0.729
Tnr / tenascin R / 1.230
Tox / thymocyte selection-associated high mobility group box / 0.680
Tox2 / TOX high mobility group box family member 2 / 1.326
Tox3 / TOX high mobility group box family member 3 / 1.231
Tpbg / trophoblast glycoprotein / 1.551
Tpd52l1 / tumor protein D52-like 1 / 1.262
Ube2cbp / ubiquitin-conjugatingenzyme E2C bindingprotein / 1.247
Ubr5 / ubiquitin protein ligase E3 component n-recognin 5 / 0.763
Uggt2 / UDP-glucose glycoprotein glucosyltransferase 2 / 0.629
Ulk4 / unc-51-like kinase 4 (C. elegans) / 0.712
Unc13a / unc-13 homolog A (C. elegans) / 1.224
Unc5d / unc-5 homolog D (C. elegans) / 1.260
Usp28 / ubiquitin specific peptidase 28 / 0.771
Vav2 / vav 2 oncogene / 1.295
Vcan / versican / 0.764
Wbscr17 / Williams-Beuren syndrome chromosome region 17 homolog (human) / 0.796
Wfs1 / Wolfram syndrome 1 homolog (human) / 1.243
Wipf3 / WAS/WASL interacting protein family, member 3 / 1.272
Ypel2 / yippee-like 2 (Drosophila) / 0.787
Zbtb16 / zinc finger and BTB domain containing 16 / 1.334
Zbtb7c / zinc finger and BTB domain containing 7C / 0.654
Zdhhc22 / zinc finger, DHHC-type containing 22 / 1.695
Zfp385b / zinc finger protein 385B / 0.550
Zfp60 / zinc finger protein 60 / 0.796
Zfp804a / zinc finger protein 804A / 0.571
Zfpm1 / zinc finger protein, multitype 1 / 1.214