Supplementary Table S5. Gene ontology(GO) enrichments only for N starvation after 24h treatment.

GO ID / Term / Annotated / Significant / classic / weight
Up-regulated
root
GO:0015979 / photosynthesis / 60 / 4 / 0.00011 / 0.00096
GO:0009877 / nodulation / 6 / 1 / 0.02466 / 0.02466
GO:0009628 / response to abiotic stimulus / 1245 / 10 / 0.02944 / 0.02944
GO:0006559 / L-phenylalanine catabolic process / 8 / 1 / 0.03275 / 0.03275
GO:0006032 / chitin catabolic process / 15 / 1 / 0.06054 / 0.06054
GO:0009765 / photosynthesis, light harvesting / 16 / 1 / 0.06444 / 0.06444
GO:0006814 / sodium ion transport / 17 / 1 / 0.06833 / 0.06833
GO:0045454 / cell redox homeostasis / 108 / 2 / 0.0739 / 0.0739
GO:0009607 / response to biotic stimulus / 1142 / 9 / 0.04299 / 0.08615
GO:0000272 / polysaccharide catabolic process / 24 / 1 / 0.09512 / 1
GO:0006030 / chitin metabolic process / 15 / 1 / 0.06054 / 1
GO:0006040 / amino sugar metabolic process / 15 / 1 / 0.06054 / 1
GO:0006041 / glucosamine metabolic process / 15 / 1 / 0.06054 / 1
GO:0006043 / glucosamine catabolic process / 15 / 1 / 0.06054 / 1
GO:0006044 / N-acetylglucosamine metabolic process / 15 / 1 / 0.06054 / 1
GO:0006046 / N-acetylglucosamine catabolic process / 15 / 1 / 0.06054 / 1
GO:0006558 / L-phenylalanine metabolic process / 14 / 1 / 0.05661 / 1
GO:0009063 / amino acid catabolic process / 18 / 1 / 0.07221 / 1
GO:0009074 / aromatic amino acid family catabolic pro... / 8 / 1 / 0.03275 / 1
GO:0009310 / amine catabolic process / 18 / 1 / 0.07221 / 1
GO:0019439 / aromatic compound catabolic process / 8 / 1 / 0.03275 / 1
GO:0019684 / photosynthesis, light reaction / 17 / 1 / 0.06833 / 1
GO:0044247 / cellular polysaccharide catabolic proces... / 15 / 1 / 0.06054 / 1
GO:0044270 / nitrogen compound catabolic process / 18 / 1 / 0.07221 / 1
GO:0044403 / symbiosis, encompassing mutualism throug... / 12 / 1 / 0.04872 / 1
GO:0044419 / interspecies interaction between organis... / 12 / 1 / 0.04872 / 1
GO:0046348 / amino sugar catabolic process / 15 / 1 / 0.06054 / 1
GO:0051704 / multi-organism process / 80 / 3 / 0.00441 / 1
GO:0065008 / regulation of biological quality / 234 / 3 / 0.07286 / 1
shoot
GO:0042742 / defense response to bacterium / 4 / 3 / 1.90E-05 / 1.90E-05
GO:0050832 / defense response to fungus / 4 / 3 / 1.90E-05 / 1.90E-05
GO:0009415 / response to water / 11 / 3 / 0.00072 / 0.00072
GO:0009790 / embryonic development / 31 / 4 / 0.00176 / 0.00176
GO:0006097 / glyoxylate cycle / 5 / 2 / 0.00277 / 0.00277
GO:0050896 / response to stimulus / 3777 / 86 / 0.00062 / 0.00925
GO:0009611 / response to wounding / 5 / 2 / 0.00277 / 0.01687
GO:0005975 / carbohydrate metabolic process / 823 / 23 / 0.01217 / 0.02097
GO:0006032 / chitin catabolic process / 15 / 2 / 0.02597 / 0.02597
GO:0015996 / chlorophyll catabolic process / 3 / 1 / 0.05001 / 0.05001
GO:0032501 / multicellular organismal process / 792 / 23 / 0.00789 / 0.06207
GO:0032502 / developmental process / 1286 / 31 / 0.02731 / 0.06578
GO:0016068 / type I hypersensitivity / 4 / 1 / 0.06612 / 0.06612
GO:0016998 / cell wall catabolic process / 27 / 2 / 0.07612 / 0.07612
GO:0017148 / negative regulation of translation / 5 / 1 / 0.08196 / 0.08196
GO:0000003 / reproduction / 520 / 14 / 0.05892 / 0.09718
GO:0007275 / multicellular organismal development / 777 / 22 / 0.01227 / 0.51866
GO:0009607 / response to biotic stimulus / 1142 / 30 / 0.0101 / 0.58115
GO:0000272 / polysaccharide catabolic process / 24 / 2 / 0.06184 / 1
GO:0002250 / adaptive immune response / 4 / 1 / 0.06612 / 1
GO:0002252 / immune effector process / 4 / 1 / 0.06612 / 1
GO:0002437 / inflammatory response to antigenic stimu... / 4 / 1 / 0.06612 / 1
GO:0002438 / acute inflammatory response to antigenic... / 4 / 1 / 0.06612 / 1
GO:0002443 / leukocyte mediated immunity / 4 / 1 / 0.06612 / 1
GO:0002449 / lymphocyte mediated immunity / 4 / 1 / 0.06612 / 1
GO:0002460 / adaptive immune response based on somati... / 4 / 1 / 0.06612 / 1
GO:0002524 / hypersensitivity / 4 / 1 / 0.06612 / 1
GO:0002526 / acute inflammatory response / 4 / 1 / 0.06612 / 1
GO:0006030 / chitin metabolic process / 15 / 2 / 0.02597 / 1
GO:0006040 / amino sugar metabolic process / 15 / 2 / 0.02597 / 1
GO:0006041 / glucosamine metabolic process / 15 / 2 / 0.02597 / 1
GO:0006043 / glucosamine catabolic process / 15 / 2 / 0.02597 / 1
GO:0006044 / N-acetylglucosamine metabolic process / 15 / 2 / 0.02597 / 1
GO:0006046 / N-acetylglucosamine catabolic process / 15 / 2 / 0.02597 / 1
GO:0006081 / aldehyde metabolic process / 12 / 2 / 0.01688 / 1
GO:0006787 / porphyrin catabolic process / 4 / 1 / 0.06612 / 1
GO:0006954 / inflammatory response / 4 / 1 / 0.06612 / 1
GO:0007585 / respiratory gaseous exchange / 5 / 1 / 0.08196 / 1
GO:0009617 / response to bacterium / 4 / 3 / 1.90E-05 / 1
GO:0009620 / response to fungus / 4 / 3 / 1.90E-05 / 1
GO:0009628 / response to abiotic stimulus / 1245 / 28 / 0.0727 / 1
GO:0009890 / negative regulation of biosynthetic proc... / 5 / 1 / 0.08196 / 1
GO:0010382 / cell wall metabolic process / 27 / 2 / 0.07612 / 1
GO:0016064 / immunoglobulin mediated immune response / 4 / 1 / 0.06612 / 1
GO:0019724 / B cell mediated immunity / 4 / 1 / 0.06612 / 1
GO:0031327 / negative regulation of cellular biosynth... / 5 / 1 / 0.08196 / 1
GO:0032269 / negative regulation of cellular protein ... / 5 / 1 / 0.08196 / 1
GO:0033015 / tetrapyrrole catabolic process / 4 / 1 / 0.06612 / 1
GO:0044247 / cellular polysaccharide catabolic proces... / 15 / 2 / 0.02597 / 1
GO:0046149 / pigment catabolic process / 3 / 1 / 0.05001 / 1
GO:0046348 / amino sugar catabolic process / 15 / 2 / 0.02597 / 1
GO:0046487 / glyoxylate metabolic process / 5 / 2 / 0.00277 / 1
GO:0051187 / cofactor catabolic process / 19 / 2 / 0.04047 / 1
GO:0051248 / negative regulation of protein metabolic... / 5 / 1 / 0.08196 / 1
GO:0051704 / multi-organism process / 80 / 5 / 0.01147 / 1
GO:0051707 / response to other organism / 4 / 3 / 1.90E-05 / 1
Down-regulated
root
GO:0006950 / response to stress / 1677 / 12 / 6.90E-05 / 6.90E-05
GO:0009628 / response to abiotic stimulus / 1245 / 10 / 0.00014 / 0.00014
GO:0001539 / ciliary or flagellar motility / 12 / 2 / 0.00029 / 0.00029
GO:0007154 / cell communication / 1880 / 10 / 0.00391 / 0.00391
GO:0007275 / multicellular organismal development / 777 / 6 / 0.00531 / 0.00531
GO:0042128 / nitrate assimilation / 3 / 1 / 0.00647 / 0.00647
GO:0009719 / response to endogenous stimulus / 2218 / 10 / 0.01293 / 0.01293
GO:0008272 / sulfate transport / 12 / 1 / 0.02565 / 0.02565
GO:0016042 / lipid catabolic process / 14 / 1 / 0.02987 / 0.02987
GO:0006350 / transcription / 1479 / 7 / 0.03306 / 0.10429
GO:0032502 / developmental process / 1286 / 7 / 0.01643 / 0.22973
GO:0006139 / nucleobase, nucleoside, nucleotide and n... / 2649 / 9 / 0.09717 / 0.6699
GO:0010467 / gene expression / 2214 / 8 / 0.08895 / 0.71269
GO:0006820 / anion transport / 41 / 1 / 0.08507 / 1
GO:0006928 / cell motility / 12 / 2 / 0.00029 / 1
GO:0007165 / signal transduction / 1842 / 9 / 0.01172 / 1
GO:0009875 / pollen-pistil interaction / 39 / 1 / 0.08109 / 1
GO:0015698 / inorganic anion transport / 28 / 1 / 0.05888 / 1
GO:0032501 / multicellular organismal process / 792 / 6 / 0.00582 / 1
GO:0042126 / nitrate metabolic process / 3 / 1 / 0.00647 / 1
GO:0050896 / response to stimulus / 3777 / 15 / 0.00448 / 1
GO:0051674 / localization of cell / 12 / 2 / 0.00029 / 1
shoot
GO:0016042 / lipid catabolic process / 14 / 1 / 0.01085 / 0.01085
GO:0006950 / response to stress / 1677 / 4 / 0.03027 / 0.03027
GO:0016567 / protein ubiquitination / 419 / 2 / 0.03985 / 0.03985
GO:0006865 / amino acid transport / 72 / 1 / 0.05469 / 0.05469
GO:0009628 / response to abiotic stimulus / 1245 / 3 / 0.06372 / 0.06372
GO:0000003 / reproduction / 520 / 2 / 0.05894 / 1
GO:0006512 / ubiquitin cycle / 480 / 2 / 0.05103 / 1
GO:0015837 / amine transport / 72 / 1 / 0.05469 / 1
GO:0015849 / organic acid transport / 74 / 1 / 0.05617 / 1
GO:0032446 / protein modification by small protein co... / 419 / 2 / 0.03985 / 1
GO:0046942 / carboxylic acid transport / 74 / 1 / 0.05617 / 1