Supplementary Table 9: SINE/LINE frequency in the breakpoint-flanking regions of the 24 human-specific inversions in human as compared to chimpanzee
Inversion # / Number of repeats in the breakpoint- flanking regions in HSA / Length of regions analysed in HSA (bp) / Number of repeats in the breakpoint-flanking regions in PTR / Length of regions analysed in PTR (bp)Alu / MIR / LTR / L1 / L2 / Alu / MIR / LTR / L1 / L2
1 / 2 / 0 / 0 / 0 / 0 / 1051 / 2 / 0 / 0 / 0 / 0 / 1358
3 / 0 / 0 / 0 / 0 / 1 / 1143 / 0 / 0 / 0 / 0 / 1 / 1442
4 / 0 / 1 / 0 / 0 / 0 / 1263 / 0 / 1 / 0 / 0 / 0 / 1417
6 / 0 / 0 / 0 / 2 / 0 / 1348 / 0 / 0 / 0 / 2 / 0 / 1534
7 / 1 / 0 / 0 / 0 / 0 / 1611 / 1 / 0 / 0 / 0 / 0 / 1608
10 / 4 / 0 / 0 / 0 / 0 / 2000 / 3 / 0 / 0 / 0 / 0 / 2000
11 / 0 / 0 / 0 / 1 / 0 / 1649 / 0 / 0 / 0 / 1 / 0 / 2219
13 / 0 / 0 / 0 / 2 / 0 / 2000 / 0 / 0 / 0 / 1 / 0 / 2000
14 / 0 / 0 / 0 / 0 / 0 / 2000 / 0 / 0 / 0 / 0 / 0 / 2000
15 / 0 / 0 / 2 / 0 / 0 / 1757 / 0 / 1 / 1 / 0 / 0 / 2761
19 / 0 / 0 / 0 / 3 / 0 / 3000 / 0 / 0 / 0 / 1 / 0 / 2274
23 / 1 / 2 / 4 / 0 / 0 / 2000 / 1 / 1 / 2 / 0 / 0 / 2000
24 / 0 / 0 / 0 / 2 / 0 / 1319 / 0 / 0 / 1 / 2 / 0 / 2526
25 / 0 / 1 / 0 / 1 / 0 / 1358 / 0 / 1 / 0 / 3 / 0 / 1843
26 / 0 / 1 / 2 / 0 / 1 / 2000 / 0 / 1 / 1 / 0 / 1 / 2000
27 / 0 / 0 / 0 / 0 / 1 / 1179 / 0 / 0 / 0 / 0 / 1 / 1179
28 / 0 / 1 / 0 / 0 / 0 / 1125 / 0 / 1 / 2 / 0 / 0 / 3125
29 / 0 / 0 / 0 / 0 / 0 / 1377 / 0 / 0 / 0 / 0 / 0 / 1377
30 / 0 / 0 / 0 / 3 / 0 / 1411 / 0 / 0 / 1 / 4 / 0 / 2928
31 / 0 / 0 / 0 / 1 / 0 / 1417 / 0 / 1 / 1 / 2 / 0 / 2414
32 / 3 / 1 / 0 / 0 / 0 / 1485 / 4 / 1 / 0 / 0 / 0 / 1578
33 / 0 / 0 / 1 / 0 / 0 / 1511 / 0 / 0 / 1 / 0 / 0 / 2586
34 / 0 / 1 / 3 / 2 / 0 / 2000 / 0 / 1 / 5 / 2 / 0 / 2380
35 / 0 / 0 / 1 / 0 / 0 / 2000 / 0 / 0 / 1 / 0 / 0 / 2000
Repeats/kb / 0.3 / 0.2 / 0.3 / 0.4 / 0.1 / 0.2 / 0.2 / 0.3 / 0.4 / 0.1
P-valuea / 1 / 0.3 / 1 / 0.16 / 0.5
a: P-values obtained with the Wilcoxon signed-rank test applied to ascertain whether differences in the frequency of repeat elements existed in the breakpoint-flanking regions between the human and chimpanzee genomes. MIR: mammalian-wide interspersed repeats; LTR: Long Terminal Repeat retrotransposons