Supplementary Table 2a.
Probe sets in cluster 2 (Table 3) according to Affymetrix NetAffx (June 9, 2009).
1552286_at / ATP6V1E2 / ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E2
1552716_at / LOC100134025; SPEF2 / hypothetical protein LOC100134025; sperm flagellar 2
1552977_a_at / CNPY3 / canopy 3 homolog (zebrafish)
1553105_s_at / DSG2 / desmoglein 2
1553183_at / UMODL1 / uromodulin-like 1
1553297_a_at / CSF3R / colony stimulating factor 3 receptor (granulocyte)
1553696_s_at / ZNF569 / zinc finger protein 569
1553709_a_at / PRPF38A / PRP38 pre-mRNA processing factor 38 (yeast) domain containing A
1553956_at / ALS2CR4 / amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4
1553976_a_at / RP11-529I10.4 / deleted in a mouse model of primary ciliary dyskinesia
1553984_s_at / DTYMK; LOC727761 / deoxythymidylate kinase (thymidylate kinase); similar to Deoxythymidylate kinase (thymidylate kinase)
1554102_a_at / TMTC4 / transmembrane and tetratricopeptide repeat containing 4
1554256_a_at / PCNXL2 / pecanex-like 2 (Drosophila)
1554489_a_at / CEP70 / centrosomal protein 70kDa
1554679_a_at / LAPTM4B / lysosomal protein transmembrane 4 beta
1554883_a_at / ERCC8 / excision repair cross-complementing rodent repair deficiency, complementation group 8
1554885_a_at / PRIM2 / primase, DNA, polypeptide 2 (58kDa)
1554918_a_at / ABCC4 / ATP-binding cassette, sub-family C (CFTR/MRP), member 4
1555041_a_at / NAGA / N-acetylgalactosaminidase, alpha-
1555278_a_at / CKAP5 / cytoskeleton associated protein 5
1555543_a_at / CLCC1 / chloride channel CLIC-like 1
1555736_a_at / AGTRAP / angiotensin II receptor-associated protein
1555764_s_at / TIMM10 / translocase of inner mitochondrial membrane 10 homolog (yeast)
1555906_s_at / C3orf23 / chromosome 3 open reading frame 23
1557227_s_at / TPR / translocated promoter region (to activated MET oncogene)
1557915_s_at / GSTO1 / glutathione S-transferase omega 1
1558215_s_at / UBTF / upstream binding transcription factor, RNA polymerase I
1559946_s_at / RUVBL2 / RuvB-like 2 (E. coli)
1564521_x_at / PRMT5 / protein arginine methyltransferase 5
1564962_at / ZNF92 / zinc finger protein 92
200068_s_at / CANX / calnexin
200078_s_at / ATP6V0B / ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b
200593_s_at / HNRNPU / heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)
200599_s_at / HSP90B1 / heat shock protein 90kDa beta (Grp94), member 1
200613_at / AP2M1 / adaptor-related protein complex 2, mu 1 subunit
200621_at / CSRP1 / cysteine and glycine-rich protein 1
200622_x_at / CALM1; CALM2; CALM3 / calmodulin 1 (phosphorylase kinase, delta); calmodulin 2 (phosphorylase kinase, delta); calmodulin 3 (phosphorylase kinase, delta)
200636_s_at / PTPRF / protein tyrosine phosphatase, receptor type, F
200643_at / HDLBP / high density lipoprotein binding protein
200647_x_at / EIF3C; EIF3CL / eukaryotic translation initiation factor 3, subunit C; eukaryotic translation initiation factor 3, subunit C-like
200658_s_at / PHB / prohibitin
200665_s_at / SPARC / secreted protein, acidic, cysteine-rich (osteonectin)
200679_x_at / HMGB1 / high-mobility group box 1
200680_x_at / HMGB1 / high-mobility group box 1
200687_s_at / SF3B3 / splicing factor 3b, subunit 3, 130kDa
200691_s_at / HSPA9 / heat shock 70kDa protein 9 (mortalin)
200695_at / PPP2R1A / protein phosphatase 2 (formerly 2A), regulatory subunit A, alpha isoform
200746_s_at / GNB1 / guanine nucleotide binding protein (G protein), beta polypeptide 1
200747_s_at / NUMA1 / nuclear mitotic apparatus protein 1
200754_x_at / SFRS2 / splicing factor, arginine/serine-rich 2
200755_s_at / CALU / calumenin
200777_s_at / BZW1 / basic leucine zipper and W2 domains 1
200783_s_at / STMN1 / stathmin 1/oncoprotein 18
200787_s_at / PEA15 / phosphoprotein enriched in astrocytes 15
200790_at / ODC1 / ornithine decarboxylase 1
200793_s_at / ACO2 / aconitase 2, mitochondrial
200802_at / SARS / seryl-tRNA synthetase
200820_at / PSMD8 / proteasome (prosome, macropain) 26S subunit, non-ATPase, 8
200825_s_at / HYOU1 / hypoxia up-regulated 1
200842_s_at / EPRS / glutamyl-prolyl-tRNA synthetase
200846_s_at / PPP1CA / protein phosphatase 1, catalytic subunit, alpha isoform
200867_at / RNF114 / ring finger protein 114
200882_s_at / PSMD4 / proteasome (prosome, macropain) 26S subunit, non-ATPase, 4
200889_s_at / SSR1 / signal sequence receptor, alpha
200903_s_at / AHCY / S-adenosylhomocysteine hydrolase
200910_at / CCT3 / chaperonin containing TCP1, subunit 3 (gamma)
200934_at / DEK / DEK oncogene
200943_at / HMGN1 / high-mobility group nucleosome binding domain 1
200950_at / ARPC1A / actin related protein 2/3 complex, subunit 1A, 41kDa
200959_at / FUS / fusion (involved in t(12;16) in malignant liposarcoma)
200960_x_at / CLTA / clathrin, light chain (Lca)
200983_x_at / CD59 / CD59 molecule, complement regulatory protein
200984_s_at / CD59 / CD59 molecule, complement regulatory protein
200985_s_at / CD59 / CD59 molecule, complement regulatory protein
200990_at / TRIM28 / tripartite motif-containing 28
200991_s_at / SNX17 / sorting nexin 17
201000_at / AARS / alanyl-tRNA synthetase
201035_s_at / HADH / hydroxyacyl-Coenzyme A dehydrogenase
201061_s_at / STOM / stomatin
201065_s_at / GTF2I; GTF2IP1; LOC100093631 / general transcription factor II, i; general transcription factor II, i, pseudogene 1; general transcription factor II, i, pseudogene
201066_at / CYC1 / cytochrome c-1
201073_s_at / SMARCC1 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
201076_at / NHP2L1 / NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)
201079_at / SYNGR2 / synaptogyrin 2
201093_x_at / SDHA / succinate dehydrogenase complex, subunit A, flavoprotein (Fp)
201114_x_at / PSMA7 / proteasome (prosome, macropain) subunit, alpha type, 7
201126_s_at / MGAT1 / mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
201145_at / HAX1 / HCLS1 associated protein X-1
201162_at / IGFBP7 / insulin-like growth factor binding protein 7
201173_x_at / NUDC / nuclear distribution gene C homolog (A. nidulans)
201183_s_at / CHD4 / chromodomain helicase DNA binding protein 4
201199_s_at / PSMD1 / proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
201200_at / CREG1 / cellular repressor of E1A-stimulated genes 1
201206_s_at / RRBP1 / ribosome binding protein 1 homolog 180kDa (dog)
201232_s_at / PSMD13 / proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
201233_at / PSMD13 / proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
201252_at / PSMC4 / proteasome (prosome, macropain) 26S subunit, ATPase, 4
201263_at / TARS / threonyl-tRNA synthetase
201266_at / TXNRD1 / thioredoxin reductase 1
201272_at / AKR1B1 / aldo-keto reductase family 1, member B1 (aldose reductase)
201275_at / FDPS / farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase)
201322_at / ATP5B / ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
201342_at / SNRPC / small nuclear ribonucleoprotein polypeptide C
201376_s_at / HNRNPF / heterogeneous nuclear ribonucleoprotein F
201379_s_at / TPD52L2 / tumor protein D52-like 2
201388_at / PSMD3 / proteasome (prosome, macropain) 26S subunit, non-ATPase, 3
201391_at / TRAP1 / TNF receptor-associated protein 1
201405_s_at / COPS6 / COP9 constitutive photomorphogenic homolog subunit 6 (Arabidopsis)
201415_at / GSS / glutathione synthetase
201420_s_at / WDR77 / WD repeat domain 77
201421_s_at / WDR77 / WD repeat domain 77
201433_s_at / PTDSS1 / phosphatidylserine synthase 1
201456_s_at / BUB3 / budding uninhibited by benzimidazoles 3 homolog (yeast)
201457_x_at / BUB3 / budding uninhibited by benzimidazoles 3 homolog (yeast)
201458_s_at / BUB3 / budding uninhibited by benzimidazoles 3 homolog (yeast)
201459_at / RUVBL2 / RuvB-like 2 (E. coli)
201470_at / GSTO1 / glutathione S-transferase omega 1
201483_s_at / SUPT4H1 / suppressor of Ty 4 homolog 1 (S. cerevisiae)
201484_at / SUPT4H1 / suppressor of Ty 4 homolog 1 (S. cerevisiae)
201489_at / PPIF / peptidylprolyl isomerase F
201490_s_at / PPIF / peptidylprolyl isomerase F
201511_at / AAMP / angio-associated, migratory cell protein
201517_at / NCBP2 / nuclear cap binding protein subunit 2, 20kDa
201530_x_at / EIF4A1 / eukaryotic translation initiation factor 4A, isoform 1
201537_s_at / DUSP3 / dual specificity phosphatase 3
201550_x_at / ACTG1 / actin, gamma 1
201561_s_at / CLSTN1 / calsyntenin 1
201570_at / SAMM50 / sorting and assembly machinery component 50 homolog (S. cerevisiae)
201572_x_at / DCTD / dCMP deaminase
201577_at / NME1; NME2 / non-metastatic cells 1, protein (NM23A) expressed in; non-metastatic cells 2, protein (NM23B) expressed in
201583_s_at / SEC23B / Sec23 homolog B (S. cerevisiae)
201609_x_at / ICMT / isoprenylcysteine carboxyl methyltransferase
201622_at / SND1 / staphylococcal nuclease and tudor domain containing 1
201623_s_at / DARS / aspartyl-tRNA synthetase
201679_at / ARS2 / arsenate resistance protein 2
201680_x_at / ARS2 / arsenate resistance protein 2
201681_s_at / DLG5 / discs, large homolog 5 (Drosophila)
201700_at / CCND3 / cyclin D3
201706_s_at / PEX19 / peroxisomal biogenesis factor 19
201717_at / MRPL49 / mitochondrial ribosomal protein L49
201719_s_at / EPB41L2 / erythrocyte membrane protein band 4.1-like 2
201723_s_at / GALNT1 / UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)
201755_at / MCM5 / minichromosome maintenance complex component 5
201756_at / RPA2 / replication protein A2, 32kDa
201763_s_at / DAXX / death-domain associated protein
201764_at / TMEM106C / transmembrane protein 106C
201769_at / CLINT1 / clathrin interactor 1
201771_at / SCAMP3 / secretory carrier membrane protein 3
201790_s_at / DHCR7 / 7-dehydrocholesterol reductase
201791_s_at / DHCR7 / 7-dehydrocholesterol reductase
201804_x_at / TBCB / tubulin folding cofactor B
201827_at / SMARCD2 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
201829_at / NET1 / neuroepithelial cell transforming 1
201830_s_at / NET1 / neuroepithelial cell transforming 1
201831_s_at / USO1 / USO1 homolog, vesicle docking protein (yeast)
201885_s_at / CYB5R3 / cytochrome b5 reductase 3
201894_s_at / SSR1 / signal sequence receptor, alpha
201904_s_at / CTDSPL / CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like
201906_s_at / CTDSPL / CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like
201908_at / DVL3 / dishevelled, dsh homolog 3 (Drosophila)
201927_s_at / PKP4 / plakophilin 4
201949_x_at / CAPZB / capping protein (actin filament) muscle Z-line, beta
201966_at / NDUFS2 / NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa (NADH-coenzyme Q reductase)
201968_s_at / PGM1 / phosphoglucomutase 1
201969_at / NASP / nuclear autoantigenic sperm protein (histone-binding)
201970_s_at / NASP / nuclear autoantigenic sperm protein (histone-binding)
201979_s_at / PPP5C / protein phosphatase 5, catalytic subunit
202024_at / ASNA1 / arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)
202030_at / BCKDK / branched chain ketoacid dehydrogenase kinase
202042_at / HARS / histidyl-tRNA synthetase
202052_s_at / RAI14 / retinoic acid induced 14
202093_s_at / PAF1 / Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
202094_at / BIRC5 / baculoviral IAP repeat-containing 5
202122_s_at / M6PRBP1 / mannose-6-phosphate receptor binding protein 1
202138_x_at / JTV1 / JTV1 gene
202139_at / AKR7A2 / aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase)
202144_s_at / ADSL / adenylosuccinate lyase
202174_s_at / PCM1 / pericentriolar material 1
202183_s_at / KIF22 / kinesin family member 22
202189_x_at / PTBP1 / polypyrimidine tract binding protein 1
202193_at / LIMK2 / LIM domain kinase 2
202263_at / CYB5R1 / cytochrome b5 reductase 1
202290_at / PDAP1 / PDGFA associated protein 1
202315_s_at / BCR / breakpoint cluster region
202319_at / SENP6 / SUMO1/sentrin specific peptidase 6
202338_at / TK1 / thymidine kinase 1, soluble
202345_s_at / FABP5; FABP5L2; FABP5L7 / fatty acid binding protein 5 (psoriasis-associated); fatty acid binding protein 5-like 2; fatty acid binding protein 5-like 7
202381_at / ADAM9 / ADAM metallopeptidase domain 9 (meltrin gamma)
202402_s_at / CARS / cysteinyl-tRNA synthetase
202407_s_at / PRPF31 / PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)
202408_s_at / PRPF31 / PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)
202412_s_at / USP1 / ubiquitin specific peptidase 1
202413_s_at / USP1 / ubiquitin specific peptidase 1
202416_at / DNAJC7 / DnaJ (Hsp40) homolog, subfamily C, member 7
202433_at / SLC35B1 / solute carrier family 35, member B1
202444_s_at / ERLIN1 / ER lipid raft associated 1
202472_at / MPI / mannose phosphate isomerase
202532_s_at / DHFR / dihydrofolate reductase
202567_at / SNRPD3 / small nuclear ribonucleoprotein D3 polypeptide 18kDa
202578_s_at / DDX19A / DEAD (Asp-Glu-Ala-As) box polypeptide 19A
202601_s_at / HTATSF1 / HIV-1 Tat specific factor 1
202642_s_at / TRRAP / transformation/transcription domain-associated protein
202650_s_at / KIAA0195 / KIAA0195
202655_at / ARMET / arginine-rich, mutated in early stage tumors
202667_s_at / SLC39A7 / solute carrier family 39 (zinc transporter), member 7
202726_at / LIG1 / ligase I, DNA, ATP-dependent
202737_s_at / LSM4 / LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
202738_s_at / PHKB / phosphorylase kinase, beta
202740_at / ACY1 / aminoacylase 1
202779_s_at / LOC731049; UBE2S / similar to Ubiquitin-conjugating enzyme E2S (Ubiquitin-conjugating enzyme E2-24 kDa) (Ubiquitin-protein ligase) (Ubiquitin carrier protein) (E2-EPF5); ubiquitin-conjugating enzyme E2S
202794_at / INPP1 / inositol polyphosphate-1-phosphatase
202802_at / DHPS / deoxyhypusine synthase
202806_at / DBN1 / drebrin 1
202830_s_at / SLC37A4 / solute carrier family 37 (glucose-6-phosphate transporter), member 4
202835_at / TXNL4A / thioredoxin-like 4A
202844_s_at / RALBP1 / ralA binding protein 1
202846_s_at / PIGC / phosphatidylinositol glycan anchor biosynthesis, class C
202858_at / U2AF1 / U2 small nuclear RNA auxiliary factor 1
202862_at / FAH / fumarylacetoacetate hydrolase (fumarylacetoacetase)
202868_s_at / POP4 / processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)
202870_s_at / CDC20 / cell division cycle 20 homolog (S. cerevisiae)
202927_at / PIN1 / peptidylprolyl cis/trans isomerase, NIMA-interacting 1
202929_s_at / DDT / D-dopachrome tautomerase
202937_x_at / RRP7A / ribosomal RNA processing 7 homolog A (S. cerevisiae)
202943_s_at / NAGA / N-acetylgalactosaminidase, alpha-
202946_s_at / BTBD3 / BTB (POZ) domain containing 3
202948_at / IL1R1 / interleukin 1 receptor, type I
202982_s_at / ACOT1; ACOT2 / acyl-CoA thioesterase 1; acyl-CoA thioesterase 2
202983_at / HLTF / helicase-like transcription factor
202993_at / ILVBL / ilvB (bacterial acetolactate synthase)-like
203031_s_at / UROS / uroporphyrinogen III synthase
203035_s_at / PIAS3 / protein inhibitor of activated STAT, 3
203046_s_at / TIMELESS / timeless homolog (Drosophila)
203076_s_at / SMAD2 / SMAD family member 2
203081_at / CTNNBIP1 / catenin, beta interacting protein 1
203103_s_at / PRPF19 / PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae)
203109_at / UBE2M / ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast)
203114_at / LYPLA1; SSSCA1 / lysophospholipase I; Sjogren syndrome/scleroderma autoantigen 1
203116_s_at / FECH / ferrochelatase (protoporphyria)
203142_s_at / AP3B1 / adaptor-related protein complex 3, beta 1 subunit
203152_at / MRPL40 / mitochondrial ribosomal protein L40