Supplementary Table 1: Genes mapping to the X chromosome – overgo sequences and BAC clones.
Gene / Human Location / Overgo A / Overgo B / BACsACSL4 / Xq23 / GGTTTTGTACTGGAGATATTGGAG / CCATCAGGGTGAAACTCTCCAATA / 621I22, 551L23, 463G14
AKAP4 / Xp11.2 / CGTTTCAGCATAGCCTCCATGATG / AACAGAATGCCGCCGACATCATGG / 545L3
AMMECR1 / Xq22.3 / TCACTATGGCAACGGAAACTATCA / CTGTACCATTTTATGATGATAGTT / 453E3, 576M10
AMOT / Xq23 / AGAAGGAGGAGCGCATCCTTGCTC / GTCATGTCAGCCTCCAGAGCAAGG / 529J11
AR / Xq12 / N/A / N/A / 582I21
CAPN6 / Xq23 / GCCGGAATATTCCACTTCCGTTTC / AGTCACCAAAATGCCAGAAACGGA / 577O7, 526M8
Cxorf9 / Xq26 / ATCCCCTCCGACAGGGCCTTCACC / AGATGGGCAAGACGATGGTGAAGG / 582B14, 621A11
DOCK11
/ Xq24 / CCCACAGAAGTAAAAGATCTGACC / CTGTGCGGATTCTCTTGGTCAGAT / 473P13, 542F15, 563C1DRP2 / Xq22 / AAGGAAGGCACAGGAAAGGAAGGC / TGGTCATGAGCATGACGCCTTCCT / 297I6
ELF4 / Xq26 / CCCATGGTCTCATAGTTCATGTCC / AGCAGAAAAACAAGCCGGACATGA / 584J6, 517D18
ENOX2 / Xq25 / ACCACCTGCAACCCGAGAAAGACC / TGTTTTGCATCCTGGGGGTCTTTC / 545L3
F9 / Xq27 / ATGGCGATCAGTGTGAGTCAAATC / CCTCCATTTAAGCAGGGATTTGAC / 534E17
GATA1 / Xp11.23 / CGGTTCCGGGTCTGAATACCATCC / CCCTGACCATGCGCAAGGATGGTA / 513G15, 514O20, 530J23
GLA / Xq22 / GCCATCTGAGTGACTTGTTGCTCC / ACTTTGGACTCAGCTGGGAGCAAC / 592F3
GLRA4 / Xq22.2 / GCACACTCCCATTCTTGAAGATCC / GACAACAAGCTGCTTCGGATCTTC / 592F3
HEPH / Xq12 / ATGGCTAATGCACTGCCATGTGGC / AGCATGGACATGGTCAGCCACATG / 452D24, 447H11, 513K18
HPRT1 / Xq26.1 / N/A / N/A / 162E23 (GenBank Accession No. AC154070)
HS6ST2 / Xq26.2 / ATCGTCTTCCTGCACATCCAGAAG / AAGTGGTGCCCCCGGTCTTCTGGA / 568G17, 550D9
IL13RA1 / Xq24 / CCACCTGTGACCAATTTCAGCAT / GAGGTTCTTCACGGAAATGCTGAA / 354A7
IL1RAPL2 / Xq22.2 / GGTGCGAATGTAACTGTAGAACAG / CCGAGTAAAATGTGCCCTGTTCTA / 514B12
LHFPL1 / Xq23 / ACAGTGCACATCTGCCAGGCCAGG / TCTATGCCATCCCCAGCCTGGCCT / 586C5
LRCH2 / Xq23 / ACAGAGATTCCTTCGGATGTCTGG / CAAGAGGTGCAAATAACCAGACAT / 436O4
OGT / Xq13 / CCAGCTGGAGAAGAATAGGTTACC / GTGAGGATGCACAGAAGGTAACCT / 560H7
OPN1MW / Xq28 / N/A / N/A / MeVIA22L1, MeVIA35g12 (Wakefield et al. 2008)
PGK1
/ Xq13 / CCAGTCTAAGCCTAAGTCAGTTCC / TTTGGGGGATGTGAAGGGAACTGA / 477G9PHF6 / Xq26.3 / N/A / N/A / 162E23 (GenBank Accession No. AC154070)
PSMD10 / Xq22.3 / TCACTTGGGCTCCTTTTGCTAGCA / GAGATTGTGAAGGCTCTGCTAGCA / 540J9, 458N17
RBM10 / Xp11.23 / CACACCACACTTGAAACACTTTTC / GAACTTCAAACGTCGAGAAAAGTG / 51D22
RBMX / Xq26.3 / MEVIA72C1 (Alsop et al. 2005)
RNF12 / Xq13 / N/A / N/A / 480D6, 624G2, 613D1
SLC25A14 / Xq24 / CCCCTAGTGCCTTCTTGCTGGTAT / GCAGCTTCATCGATATATACCAGC / 34H17
STAG2 / Xq25 / GATGCAGAAAAGGTGACTAACTTG / ACTGAGGCAACTGCAACAAGTTAG / 532E15, 447E3
STARD8 / Xq13.1 / CCAGTGTGGATGTCTACCACTATG / GCCATGCTGTCTGTGACATAGTGG / 578I2
SYN1 / Xp11.23 / CAGGTACAAGCTGTGGGTAGATACA / CCCAAAGATTTCTGAACATGTATCTA / 511H21, 505A18
TBC1D25 / Xp11.3 / AGGTGGTGTGGCGCTACTTGCTC / GTCGGGGTAGACATTGAGCAAGT / 513G15, 514O20
TBC1D8B / Xq22.3 / ACATTCCTTCTCATGGAGCAGCTG / TTACTGCATAGTTGGCCAGCTGCT / 484B24, 447M2, 477L18
TEX11 / Xq13.1 / TCTCATCACCAAACTTTCATGTGC / CAGGGAGACCATTTAAGCACATGA / 32M24
TEX28 / Xq28 / N/A / N/A / MeVIA22L1, MeVIA35g12 (Wakefield et al. 2008)
THOC2 / Xq25 / GTCATGATACCCTGGTACAGTTTG / GATGCTAAAAAGCCACCAAACTGT / 584J9
TKTL1 / Xq28 / N/A / N/A / MeVIA22L1, MeVIA35g12 (Wakefield et al. 2008)
TMEM164 / Xq22.3 / TGCATCATGGTGACCAGGTGGCAG / TCTACCTGCTCAACCCCTGCCACC / 516I10
TMLHE / Xq28 / GTCTCAAGCATGAAGGTACTGGTG / ACAAGCAGGGTCCTACCACCAGTA / 482N16, 483P24
TRPC5 / Xq23 / TAGACGCTGTGGCTGAGTAACAGC / ACCTGGAGATCATGGAGCTGTTAC / 535C19, 566D22
UBA1 / Xp11.23 / TGTATATGGACCGTCGCTGTGTGT / AATGGCTTCCGGTAGTACACACAG / 51D22
UPF3B / Xq25 / TCTGTACCATCATGCCTCTTTCCTT / GAGATCTACTTAGGGACAAAGGAAAG / 350F7
WDR13 / Xp11.23 / ACGTGGTGTGTCTGACTTTGCCTG / ATCATTGGACAGGGACCAGGCAAA / 530J23
WDR44 / Xq24 / TCTAGGGTTGGTTGGACTCTTTT / CTGTCCGTGTAGCAACAAAAGAGT / 358O5
Supplementary Table 2: Genes mapped to chromosomes 5 and 6 - overgo sequences and BAC clones
Gene
/ Human Location / Overgo A / Overgo B / BACsACOT9 / Xp22.11 / GCAAGATGTCCCCTTTCTCTATCG / TCAACCAAGGCTGTCACGATAGAG / 348D24, 304O3, 292B7
ALCAM
/ 3q13.1 / TGGAAAGACTTTGGACCCTTCAGAAGGT / CAAACTCAGACTCACCTTCTG / 374E20ARIDA1 / 1p35.3 / AGCCAAGGAGAACAGAGTAACCCA / AGAAAGGAGACTGAGCTGGGTTAC / 207L15, 237M12
ARX / Xp21 / CGCTTGGGACACGCTCAAGATCAG / CCTGTGGCGCTTGACTGATCTTGA / 269O19
ATP6AP2 / Xp11.4 / TGCTGTGGGCAACTTATTCCATCG / AACAGTAGCTCGAGGACGATGGAA / 151K19, 259J4
BACE1 / 11q23.2-q23.3 / CACATCCGGAAACAGAAGAAGATG
/ GCTTTCTCAGCTCCTTCATCTTCT
/ 547I8
BACE2 / 21q22.3 / AGAACTGGTACCAGTGGAGGTAGT / TTCCTCCCATGACAAGACTACCTC / 207N22
BCL3 / 19q13.1-q13.2 / CCCTCAAAGAGCTCACAATCTC / CTTCATTCCCCCTAGAGATTGT / 342D11
BCOR / Xp21.2-p11.4 / GCACATGAAGAGCCTTTCATCCAC / TTTGCCGTTCGCATTGGTGGATGA / 203H3, 237O16
C21orf33 / 21q22.3 / ATGTGGACATCAAGAACAAAGTGG / AAGGCTGGAGTTGTGACCACTTTG / 191C7
CASK / Xp11.4 / TGGTATCAGTGTAGCAAACCAAAC / TTGCAGCTGTTCCACTGTTTGGTT / 218L24, 223N18, 230K12
CCKBR / 11p15.4 / TGCTGTCAGGGCTGCTCATGCTAC / GAGTACACGGGATAGGGTAGCATG / 287O13, 155O9
CDX2 / 13q12.3 / N/A / N/A / 122L7
CENPJ / 13q12.12 / AGTGAGGATGAAGACGATGGGAAC / CACTGCTGATAGCACTGTTCCCAT / 375I13
CHST10 / 2q11.2 / TTGAGGACTTTGTGCGTTACCTGG / CTATGATTTGGGTCCCCCAGGTAA / 266N22
CLCN4 / Xp22.3 / TTTTGCTGCCTTGGTGGCTGCTTT / GATGGACCTCAGTGTAAAAGCAGC / 201O9
CPOX / 3q12 / AGGAGGAGGTGGTATCAGCTGTGT / ATGACCATCCTGTAGCACACAGCT / 322K12
CXADR / 21q21.1 / CGGGAACAAGATGCTATGTTGATG / CCAATCTCTGATGATCCATCAACA / 230P13
CXorf22
/ Xp21.1 / CAAAAGTTCCAAGATACAATTATG / GCAAATTCAGGATCCACATAATTG / 322C15Cxorf23 / Xp22.12 / TCACCGGGGATATTCACCAGAAAG / TCGACTACTATCACCCCTTTCTGG / 145H4, 155K16, 214K15, 218E14, 243E9, 257K22, 263G22
CXorf36 / Xp11.3 / GACAGCCAACAAGAATACAAAGAC / GCAGGCAGCTAAATATGTCTTTGT / 218N9
CXorf38 / Xp11.4 / CAGGAATATCCCAGAGATTACAGC / TACCCTGGCACTTGTGGCTGTAAT / 151K19,234F24, 259J4
Cxorf58 / Xp22.11 / TGCTGATGAAGTTGATGTTGTTAC / CATGTAATCCTTCATGGTAACAAC / 479C15, 522H9
Cxorf59
/ Xp21.1 / GGCCTTGTTTTAGCAGCACAGGTG / ATGGACAGTAAGCTGCCACCTGTG / 442C6, 470D20, 504D10, 521C5, 552B9, 565H2, 592F24CYBB / Xp21.1 / GCTATGTCGAGACACACATGCCTT / GTCGGCAAACCATTCAAAGGCATG / 153K24, 202A17, 228I19, 242C23
DDX10 / 11q22-q23 / GGAGGCATTATATCGTCTACAGTG / GCCATCTGTTGATGTCCACTGTAG / 496M16, 514M21, 572L13, 609K20
DDX3X / Xp11.3-p11.23 / TGATGTCCTCTTAGCTCAGTAATG / CAATCGATACCTTGAGCATTACTG / 552I17, 605N9
DFFB / 1p36.3 / CTATTTGAGGTACAGCTGTGAGAG / AATAACTCCGTATGCGGCTCTCACA / 337O3, 405C9, 346B9, 325G8, 378N12
DMD / Xp21.2 / AGTCACAGCTGCATAGACTGAGAC / GGTTGTTCCAGTAGCTGTCTCAGT / 208G4
DNAPTP6 / 2q33.1 / TTCTGTTTTCCAGATGCTGTGGT / GTGGTGAATGCGCACACCACAGC / 317H12
DNMT3L / 21q22.3 / TCAAGCAATGAGTAACTGGAAATG / GGGTAGACACAAGAAGCATTTCCA / 158K13, 275M18
DSCAM / 21q22.2 / CCTTATACAGTCCGTGTGGAAGAC / CTCTCATGGTTTTCTGGTCTTCCA / 214O12, 234J6, 234P20
DYNLT3 / Xp21 / ATGTCAACCAGTGGACTGCAGCTT / AGGATTGCTCCCCTATAAGCTGCA / 185C17, 186O1,191M8, 202A17, 216P4, 228I19, 242C23
EFHC2 / Xp11.3 / ACTCTGAGACAATTCCTAGAGCAC / GCAAAACATGCCCATCGTGCTCTA / 171B15, 255K16
EGFL6 / Xp22 / GGCCGTTTGATTCTTCTCCTTACC / TTTGGGGCTGAAGGTTGGTAAGGA / 267H12
EIF1AX / Xp22.12 / GACAGGAATATGCCCAGGTGATCA / CCATTTCCCAACATTTTGATCACC / 166H4, 284G22
EPHA8 / 1p36.12 / GGACATTCAGAGCGATCTTACC / GAGTTGCTCCTTCTGGTAAGAT / 382G15
ESPN / 1p36.31-p36.11 / CCTCGTGCTCCAGAAAAGTCTC / GGAGTTAGAAATAGGAGACTTT / 399O10
FAIM / 3q22.3 / AGTATCCCTTTCAAGCAGCTCA / TGGCCTGAAATGCTTGAGCTGC / 417J10
FAM3B / 21q22.3 / GTGAAGAGAAGGGTAATGTGGCAA / GCAATGTTGATACCTCTTGCCACA / 260D19
FREM2
/ 13q13.3 / TCAACGACACTTTGACTAGATACC / GCACTAACAAGCCATCGGTATCTA / 600E21FTSJ1 / Xp11.23 / ACGTCCAAGGACAAGCGCGATGTC / TAGCCAGCCGGTAATAGACATCGC / 274C1, 146P24
FUNDC1 / Xp11.3 / GCAAGAAGACACCACTGGTGGAAC / AGTGGCCAAATACACGGTTCCACC / 146O20, 265N6
GABRG3 / 15q12 / CTAGAATTATTCTGTCCTGGATAT / CTGTAGGAGGTGGCCTCATATCCAG / 364I3
GRIA4 / 11q22 / CTCTTGAGAGATTTATGCATGGAG / CCTGTCACATTGGCTCCTCCATGC / 316G11
GYG2 / Xp22.3 / CCAGCATGTAGCAGAACTTGAATC / CACTGTTTGTTCTTGAGATTCAAG / 229O3
HAS1 / 19q13.4 / TTAGGCAGTTCTTTCACCGGGT / AAGGGAAGCAAACTACCCGGTG / 79G16
HBB / 11p15.5 / CTGAGGAGAAGAACGCCATC / GGTACCCTTCAGGTTGTCCA / 171K10, 235P17
HUNK / 21q22.1 / GACTGGCTGTATTGCTTCTTGTTC / TTCAAGATATTCCAAAGAACAAGA / 78M10
ICOSLG / 21q22.3 / CCAATGAGAAAGGCTTATTCAGCG / GTCAGCACACTGGAGACGCTGAAT / 158K13, 275M18
IL1RAPL1 / Xp22.1-p21.3 / ATACCAAAGTGGACCCTGACCAGT / CCAGTCTCTTGATTCCACTGGTCA / 464L22
ILK / 11p15.5-p15.4 / TGAGCCAGAGGAGATTAATCGTCG / CCACATGTCTGCAGAACGACGATT / 243F21
JAM3 / 11q25 / GGCTTTGGAGTCGGTTGGCAAA / CGAAACGACATACCTTTGCCAA / 417H14
KLHL15 / Xp22.1-p21 / AAACATCGAGGGAGTCAGGGAGAA / CAGAAAGGAGTCCAACTTCTCCCT / 444K17, 452F16
KLHL34 / Xp22.12 / CAGACGTGCCATACGTGGCTGAGG / AGGCTCAGTAGACGGTCCTCAGCC / 184H20
LANCL3 / Xp21.1 / CTGTGCGCCGCGCTGGTGCTCAAG / CCAGAGAGAGTTTCTGCTTGAGCA / 222B15, 222H23, 231A23, 239D7, 253A13, 254G3, 266A11
LCP1
/ 13q14.3 / AGAGGGCAGAGTGTATGTTGCAAC / CCCAGTTTTTCTGCTTGTTGCAAC / 549C23LENG8 / 19q13.42 / CCACAGAACTGGCTTACTTGACTC / TCTGCCTTCACCTCTCGAGTCAAG / 342K2,
LEPRE1 / 1p34.1 / GTAGTAGGCAAACTGCAGATAATT / CCTCCCATCACACTATAATTATCT / 320N20
MAOA / Xp11.3 / TTGGAGGTTCTGGTCAAGTTAGTG / AGTTCCATGATCTTTTCACTAACT / 179C4, 240N11, 161K2, 193E10, 195I4, 207N7
MAOB / Xp11.23 / TTTTGCCGGAACAGAGACTGCTAC / ATATCCGCTCCAGTGTGTAGCAGT / 179C4, 240N11
MAP3K15 / Xp22.12 / ACAGAGACTCTGGGCTCTTTCTGC / TCACTGTCCTTCCTCAGCAGAAAG / 288M23, 155K16, 170H15, 207M22, 227M19
MAP3K7IP3 / Xp21.2 / CTGTGCAACAGAGAGAAAAGCCAG / GGTCACACTGATTCTTCTGGCTTT / 178I13, 257C15
MAP7D2 / Xp22.12 / TGGTAGGACTCATCCATCTGGATG / AACTTCCCATCTAGGGCATCCAGA / 452O10, 453F7, 456A5, 604M6
MBTPS2 / Xp22.1-p22.2 / GAAGAGTGGCTGACATCTTATGGG / AAGGGGAGATGCTCAACCCATAAG / 244G23
MED14 / Xp11.4-p11.2 / GCCATCAATAAGCTCCCAACTGTG / TCAGGCCTAACATTGGCACAGTTG / 234F24
MED14 / Xp22 / N/A / N/A / 148N17
NAALAD2 / 11q14.3-q21 / ACAGATCTCCATTGCAGCATTTAC / TGCTGCTGCTTGAACTGTAAATGC / 465E12,
NCDN / 1p34.3 / CATGGACAACAACTATCATGTC / CCCCCATCAAGGGTGACATGAT / 118N20
NNMT
/ 11q23.1 / CCTGGAGAAGTACTACACCTTTGG / TGCAGAAGGGCTGGATCCAAAGGT / 566G21, 597P8, 621N13NPAS2 / 2q11.2 / AAAATCCAGGAGCAGCTGTGCATG / GGTTGGAGTCCTGGACCATGCACA / 201L10, 221O11, 241B11, 22F113
NR0B1 / Xp21.3-p21.2 / AGGTGGCCTGCAAGGCGGCCTCAG / TGCTTCACCAGCACGGCTGAGGCC / 448M16, 491P9, 478J17
OPRD1 / 1p36.1-p34.3 / GGTGATCACCAGGATGGGGACC / ATTTTTGCCTTCGTGGTCCCCA / 24L11
OTC / Xp21.1 / GGTTATCTGAAAGGCCTCACACTC / TATCACCACTCCAGTTGAGTGTGA / 621E14
PCYT1B / Xp22.11 / ATGAGCTTCCCTCAGAAACCATGG / GTGTGCTCTATTTCCTCCATGGTT / 312M9, 340P15, 370M11, 412K1, 291P4
PDCL3 / 2q11.2 / CTGGAGTGGAAACTTTCTGAATCT / CAGTTTTGATGGCTCCAGATTCAG / 186O11
PDGFD / 11q22.3 / TGTGGCCCTTTGATGGAATCCA / TGTACTGGGAGGTTTGGATTCC / 397I1
PDK3 / Xp22.11 / ACAATGATGTGGTTCCTACGATGG / TCAATCACCCCTTGGGCCATCGTA / 472I12, 553G2
PGLYRP1 / 19q13.2-q13.3 / GAGTCAGAGAGCAGAGACTGGC / TACATCCCCAGATTGCCAGTCT / 336G12
PHCA
/ 11q13.5 / GTGCCATTCAGACAGTCAGAGATG / TACCGCTTTTCCAGTCCATCTCTG / 465E22, 573C8PHEX / Xp22.2-p22.1 / CTGTGGTCAGAAAGGAAGTTCAGC / CAAGGGTCTGAAGGAGGCTGAACT / 163G6
PHKA2 / Xp22.2-p22.1 / N/A / N/A / 260M5
POLA1 / Xp22.1-p21.3 / N/A / N/A / 280J17
PPFIA3 / 19q13.33 / AGCTCAGCATAGCATTGCCTCA / AAGGTCCCCATACCTGAGGCAA / 323O23
PPP5C / 19q13.3 / GAACATGAGACAAAGAGCAGCT / CTCCTGCCTAACTCAGCTGCTC / 394H17
PRDM15 / 21q22.3 / ATCCAAACGTCACAGCGCCATCTA / GTCAAACCGACTGAACTAGATGGC / 198B13, 234J6
PRDX4 / Xp22.11 / GTCAGCACCTTATTGGGAAGGAAC / TCCATTTATCACAGCTGTTCCTTC / 400E3, 348D24, 304O3, 292B7
PRRG1 / Xp21.1 / CCTCACTGAAGAGAAAGCCAATTC / GTAACGCTTTAATACTGAATTGGC / 433A24, 526A1
PTCHD1 / Xp22.11 / CTGCAGAAAAGTCCCAAAGCCAGA / CTTCTCTTGCAACACCTCTGGCTT / 555M23
PTS
/ 11q22.3-q23.3 / AAGTGCACGAAACCGACAAAAACA / CCCTTGTAGACAACGATGTTTTTG / 543J21R3HDM1 / 2q21.3 / TAGCAGGACAACCTTGGATCCCAG / GACTCATATGGCTAAACTGGGATC / 375J5
REPS2
/ Xp22.2 / N/A / N/A / 252H2RFC3 / 13q12.3 / GCAGGAACACGAACTGCAAGGC / TATTCGGAGTAGGTGCCTTGCA / 337F14
RP2 / Xp11.4-p11.21 / TGCAGTTTGTACAGTCATCAATGG / CACTCTGCTACAATCACCATTGAT / 605H4, 491F14
RPGR / Xp11.4 / CCCGAGAATGGAAAGTTAGGTCTG / TCAGTTGCTCAGGTGACAGACCTA / 181K2, 207M4, 208G10, 258M7
RPL31 / 2q11.2 / GTGACCAGAGAGTATACCATCAAC / GAATCCTCTTGTGGATGTTGATGG / 201L10, 221O11, 241B11, 22F113
RPS6KA3 / Xp22.2-p22.1 / TGCTGCCCTTGTACTTAGACATCC / CCAGTGAACTATCCAGGGATGTCT / 284G22
RRM1 / 11p15.5 / gtgtgcactgatttccaagtcagc / AACTCCAATGCCACCAGCTGACTT / 152H12, 212C22, 212H21, 252C22
RS1 / Xp22.2-p22.1 / GAATGCCCATACCATAAACCTTTG / CTCCAGATTCAAAGCCCAAAGGTT / 306E22
RSPH1 / 21q22.3 / AAACATGGGCAAGGCTTGTTTATC / TTGATCCATCTGGATAGATAAACA / 304N7, 348H7
RUNX1 / 21q22.3 / CACAGCTGCTTCTGACCTGACAG / GAGGATCACTGAACGCTGTCAGG / 415B11
SAMSN1 / 21q11 / GAGACAGCTTTAGACTGGATGATG / CCTGTGTATGGGACTTCATCATCC / 198B13, 240M21
SAT1 / Xp22.1 / GAAGATGGGTTTGGAGAGCACCTT / CCAGACACTGGTAGAAAAGGTGCT / 511K20,
SCN3B / 11q23.3 / CTCTGAGGCCCAACTGCACCAA / GCTAATTGACAGCTTTGGTGCA / 342M3
SETDB2 / 13q14 / GAACTCAGAGGTTCCAGGTATG / CAGCAATCCAGAACCATACCTG / 317O5
SH3KBP1 / Xp22.1-p21.3 / GGATGAGCTGACAATCAGAGAAGG / AAGGGTGACTATGTCGCCTTCTCT / 283L14, 262L2
SIDT1 / 3q13.2 / GAATCCTGCTTACTGAAGCTGGAAG / GGTTACCAAAATCAAGAGCTTCCAGC / 392B14
SLC25A12 / 2q24 / CTCATTCATTCATGTGAACAGGAC / AGCTCCCAGATACAGTGTCCTGTT / 410F10
SLC9A7 / Xp11.3 / ATGCTGAAAGTTCCAGCCGATCTT / TCTGGGCAGAAGACATAAGATCGG / 590M1, 522H2, 503D3, 575B17
SMPX / Xp22.1 / TCAACATCCCAATGGGAGCCTTTC / TGTCCTGCTCCTGGCCGAAAGGCT / 184H20, 244G23
SMS / Xp22.1 / N/A / N/A / 273O19
SPG20 / 13q13.3 / CCCTTTGTTCCACTGAAGGAACAG / TCAAATTCTTGCTATGCTGTTCCT / 534I8
STAG1 / 3q22.3 / GCGCTTCTGAAGTAGTAACTCTAG / AAGAGCTAATGAAAGGCTAGAGTT / 356I20
SYNJ1 / 21q22.2 / CAGCTCCAAGCAAGAAGCCATTGC / CCCCAACAGCAAAATGTCCATTGA / 289E7
SYTL5 / Xp21.1 / AAGGTCAGCGGTGAAATCCTTCTG / AGCAGTAGCTGATGTGCAGAAGGA / 248L4
TECTA / 11q22-q24 / GTGAGTCAAAACCAGGTGCTACAC / CAACCCCATCAAAGGTGTGTAGCA / 556C13
TMEM135
/ 11q14.2 / TTCTACTCCTGGAGTCCTGGCTTT / CTGGTAAAGCAGCACCAAAGCCAG / 544I8, 584L14TMEM47 / Xp11.4 / TATGGTCTGGCTTGGGGTGCAACT / CCCCAAATGAAAATATAGTTGCAC / 477P3, 499I19
TMPRSS2 / 21q22.3 / ATGCAGTTCGCCTCTATGGACCAA / ACCTGAAGGATAAATTTTGGTCCA / 260D19
TSGA10 / 2q11.2 / AAGAGAGGTCTTGGCTCGTGACAA / GTCCTGGAGTTTATCGTTGTCACG / 221N12
TTC21B / 2q24.3 / ACGTGAATAGCATCTGGCTATA / CCACAAACAGGGACTATAGCCA / 373M24
UGCGL1 / 2q14.3 / AATGGCACCTCTGAAAGTTTGG / TTACCCTGCAACTGCCAAACTT / 399G11
USP9X / Xp11.4 / GAATTTCCACGGGAGTTGGACATG / CCACTGTGTAAGGTTCCATGTCCA / 462J7, 468M16
UTX / Xp11.2 / GAATGCTGCCTTTTTATATGGCCT / GAAGTAGACCAATCCAAGGCCATA / 175D15, 188G20
WNT4 / 1p36.23-p35.1 / N/A / N/A / 166C18
XK / Xp21.1 / TGGTGCAGTTCACGCTCATCTTCG / TTCAGGTCTCGGTGCACGAAGATG / 624F20
ZEB2 / 2q22 / GAGGATGAGGAAGATGACATAA / CACTCCACCTTCTCTTATGTCA / 431P6
ZFX / Xp21.3 / AATTATTGGCCCTGATGGTCATCCG / CAAGGATAGACAGTCAACGGATGAC / 150E10, 246L13, 260C17, 282C10
Chromosome 6 genes
C2orf29
/ 2q11.2 / TCACGGCGCTCTACCTGCTCTGGG / TCGGTGCGGTACATCTCCCAGAGC / 273K15CREG2 / 2q11.2 / ACCTTTTCCTGGGTAGATACAGT / TGGGGCTTTCTGGCTACTGTATC / 363K17
EPHA3 / 3p11.2 / TGAGCATTACACCCCTATCAGGAC / ATTGCACACCTGGTAGGTCCTGAT / 180K10, 146P22
HTRF1 / 3p12 / GAAATAGCCCACACCACGGTGAT / CAGGCTGGGATTATGATCACCGT / 390M23
MCF2L / 13q34 / TAAGCAGTACTCTCACTGCTTGAGAC / CCTACGTATTGCAGTTGTCTCAAG / 365B3
MINA
/ 3q11.2 / AGGGCCCAGTCCTTGTAAGCGAGT / AACTGCTTCCACCTTCACTCGCTT / 224K8ROBO2 / 3p12.3 / GCTTTTAGGATCACGCCTTCGCCA / GGGAGGAAAATCTTCCTGGGGAAG / 351H12
TGFBRAP1 / 2q12.1-q12.2 / AGAAGGAAGAATACCATACCCACTTA / CTCTAGATACAGGATGGCTAAGTGGG / 342N19