Supplementary Table 1. Genbank Accession Numbers, Geographic Source and Plant Host For

Supplementary Table 1. GenBank accession numbers, geographic source and plant host for taxa included in phylogenetic analyses.

Taxon / strain/isolate / Plant host / Locality / GenBank
Botryosphaeria berengeriana / NW299 / ? / China / EU520177
Botryosphaeria berengeriana / XZ05 / Pinus massoniana (root) / China / FJ441665
Botryosphaeria berengeriana f.sp. pyricola / LWDS01 / pear (mycelium) / China / HM013822
Botryosphaeria corticis / CBS119048 / Vaccinium corymbosum / USA / DQ299246
Botryosphaeria corticis / ATCC 22928 / Vaccinium sp. / USA / DQ299248
Botryosphaeria corticis / 96-125 / blueberry / USA / AF243397
Botryosphaeria corticola / CBS 112545 / Quercus sp. / Portugul / AY259089
Botryosphaeria dothidea / MUCC501 / Eucalyptus marginata / AU / EF591916
Botryosphaeria dothidea / WAC12404 / Corymbia calophylla / AU / AY744378
Botryosphaeria dothidea / CMW7999 / Ostrya sp. / Switz. / AY236948
Botryosphaeria dothidea / DAR78224 / Vitis vinifera / AU / EU137878
Botryosphaeria dothidea / UCD1672Yo / Vitis vinifera / USA / DQ233603
Botryosphaeria dothidea / CAP234 / Olea europaea / Italy / EF638749
Botryosphaeria dothidea / CBS 116741 / Olea europae / Greece / AY640254
Botryosphaeria dothidea / SDAU07150 / pomegranate / China / EU600291
Botryosphaeria dothidea / CMW8000 / Prunus sp. / Switz. / AY236949
Botryosphaeria dothidea / UY339 / Eucalyptus sp. / Uruguay / EU080918
Botryosphaeria dothidea / sdau07-61 / apple fruit / China / GQ855782
Botryosphaeria dothidea / sdau07-139 / apple fruit / China / GQ870284
Botryosphaeria dothidea / BB174-1 / Vitis vinifera / AU / HQ392698
Botryosphaeria dothidea / MUCC502 / Acacia rostellifera / AU / EF591917
Botryosphaeria dothidea / MUCC503 / Acacia cochlearis / AU / EF591918
Botryosphaeria dothidea / MUCC504 / Acacia rostellifera / AU / EF591919
Botryosphaeria dothidea / MUCC148 / Eucalyptus dunnii / AU / EU675670
Botryosphaeria dothidea / CSU-07-WP-TS16 / Vitis vinifera cv. Chardonnay / AU / FJ176570
Botryosphaeria dothidea / BD001 / HQ231407
Botryosphaeria dothidea / sdau07-139 / apple fruit / China / GQ870284
Botryosphaeria dothidea / Rhoiscissus digitata (Asphond.gall) / SAfr / EF614916
Botryosphaeria dothidea / Acacia mearnsii (Asphond.gall) / AU / EF614930
Botryosphaeria dothidea / Acacia mearnsii (Asphond.gall) / AU / EF614929
Botryosphaeria dothidea / Asphondylia galls / AU / EF614928
Botryosphaeria dothidea / Asphondylia(gall midge) mycangium / AU / EF614927
Botryosphaeria dothidea / Billardiera variifolia (Asphond.gall) / AU / EF614926
Botryosphaeria dothidea / Acacia cyclops (Asphond.gall) / AU / EF614925
Botryosphaeria dothidea / Acacia mearnsii (Asphond.gall) / AU / EF614924
Botryosphaeria dothidea / Acacia irrorata (Asphond.gall) / AU / EF614923
Botryosphaeria dothidea / Hybanthus floribunda (Asphond.gall) / AU / EF614922
Botryosphaeria dothidea / Dodonaea viscosa (Asphond.gall) / AU / EF614921
Botryosphaeria dothidea / Grewia occidentalis (Asphond.gall) / SAfr / EF614920
Botryosphaeria dothidea / Acacia karroo (Asphond.gall) / SAfr / EF614919
Botryosphaeria dothidea / Osiris compressa (Asphond.gall) / SAfr / EF614918
Botryosphaeria dothidea / Virgillea oroboides (Asphond.gall) / SAfr / EF614917
Botryosphaeria dothidea / CP291D / A. floriformis larval chamber on S. quinqueflora / AU / JN983417
Botryosphaeria dothidea / CP293D / A. floriformis larval chamber on S.quinqueflora / AU / JN983418
Botryosphaeria dothidea / CP294D / A. floriformis larval chamber on S.quinqueflora / AU / JN983419
Botryosphaeria dothidea / CP43D / A. floriformis larval chamber on S.quinqueflora / AU / JN983420
Botryosphaeria dothidea / CP41D / A. floriformis larval chamber on S.quinqueflora / AU / JN983421
Botryosphaeria dothidea / CP44D / A. floriformis larval chamber on S.quinqueflora / AU / JN983422
Botryosphaeria dothidea / mtl2044 / A. floriformis larval chamber on S.quinqueflora / AU / JN983424
Botryosphaeria dothidea / mtl2045 / A. floriformis larval chamber on S.quinqueflora / AU / JN983425
Botryosphaeria dothidea / mtl2047 / A. floriformis larval chamber on S.quinqueflora / AU / JN983426
Botryosphaeria dothidea / mtl2048 / A. floriformis larval chamber on S.quinqueflora / AU / JN983427
Botryosphaeria dothidea / mtl2050 / A. floriformis larval chamber on S.quinqueflora / AU / JN983428
Botryosphaeria dothidea / mtl2052 / A. floriformis larval chamber on S.quinqueflora / AU / JN983429
Botryosphaeria dothidea / mtl2053A / A. tecticorniae larval chamber on T. arbuscula / AU / JN983430
Botryosphaeria dothidea / mtl2054 / A. tecticorniae larval chamber on T.arbuscula / AU / JN983431
Botryosphaeria dothidea / mtl2055 / A. peelei larval chamber on T.arbuscula / AU / JN983432
Botryosphaeria dothidea / mtl2058 / A.peelei larval chamber on T.arbuscula / AU / JN983433
Botryosphaeria dothidea / gf758759 / A. sarcocorniae larval chamber on S.quinqueflora / AU / JN983434
Botryosphaeria dothidea / gf762763 / A. sarcocorniae larval chamber on S.quinqueflora / AU / JN983435
Botryosphaeria dothidea / gf764765 / A. sarcocorniae larval chamber on S.quinqueflora / AU / JN983436
Botryosphaeria dothidea / MTL1204 / A. sarcocorniae larval chamber on S.quinqueflora / AU / JN983423
Botryosphaeria eucalypticola / CMW6217 / Eucalyptus rossi / AU / AY615143
Botryosphaeria mamane / 97-59 / AF246930
Botryosphaeria obtusa / CMW7774 / Ribes sp. / USA / AY236953
Botryosphaeria parva / WAC12397 / Eucalyptus pellita / AU / AY744370
Botryosphaeria parva / CMW15950 / Eucalyptus globulus / AU / DQ093193
Botryosphaeria parva / CMW9081 / Populus nigra / NZ / AY236943
Botryosphaeria populi / CBS 110300 / Populus nigra / Portugal / AY640253
Botryosphaeria protearum / MUCC497 / Santalum acuminatum / AU / EF591912
Botryosphaeria rhodina / CMW9074 / Pinus / Mexico / DQ103533
Botryosphaeria ribis / WAC12396 / Eucalyptus grandis / AU / AY744369
Botryosphaeria ribis / CMW7773 / Ribes sp. / USA / AY236936
Botryosphaeria sarmentorum / o30.1 / Fraxinus excelsior / Sweden / FJ228180
Botryosphaeria stevensii / 94-6 / USA / AF243407
Botryosphaeria tsugae / 96-174 / USA / AF243405
Botryosphaeria sp. / B1113 / mango fruit / Taiwan / GU453691
Dichomera eucalypti / CMW15953 / Eucalyptus diversicolor / AU / DQ093195
Dichomera eucalypti / WAC12402 / Eucalyptus camaldulensis / AU / AY744373
Dichomera saubinettii / CBS990_70 / Quercus sp / Netherlnd / AY744379
Dichomera versiformis / WAC15208 / Eucalyptus camaldulensis / AU / AY744376
Diplodia africana / STE-U 6289 / Prunus / SAfr. / EF445345
Diplodia pinea / STE-U 5812 / Prunus / SAfr. / EF445342
Diplodia porosum / STE-U 5132 / Vitis vinifera / SAfr. / AY343379
Diplodia seriata / DAR79133 / Vitis vinifera / AU / FJ176562
Dothiorella moneti / MUCC507 / Acacia rostellifera / AU / EF591922
Dothiorella santali / MUCC508 / Santalum acuminatum / AU / EF591923
Fungal sp. / CMU36 / Thailand / HM473074
Fungal sp. / S6 ZLY-2010 / Oryza granulata / China / GU903279
Fungal endophyte sp. / g59 / Cinnamomum camphora (leaf) / China / HM537046
Fungal endophyte / EMS10 / Pinus tabulaeformis / China / AY546029
Guignardia alliacea / MUCC0155 / Allium fistulosum / Japan / AB454327
Guignardia sawadae / MUCC0066 / Cryptomeria japonica / Japan / AB454292
Lasiodiplodia gilanensis / C2 / Taxus chinensis var. mairei / China / JN198398
Lasiodiplodia rubropurpurea / WAC12538 / Eucalyptus grandis / AU / DQ103556
Lasiodiplodia margaritacea / CBS122065 / Adansonia gibbosa / AU / EU144051
Macrophomina phaseolina / KB-8 / India / DQ359744
Mycosphaerella heimii / Eucalyptus sp / Laos / EU882121
Mycosphaerella parva / AMR250 / AU / AY509781
Neofusicoccum australe / WAC12400 / Eucalyptus marginata / AU / AY744375
Neofusicoccum australe / MUCC495 / Santalum acuminatum / AU / EF591910
Neofusicoccum luteum / BB175-2 / Vitis vinifera / AU / HQ392719
Neofusicoccum lutea / KJ 93.52 / AF027745
Neofusicoccum mangiferum / CMW7024 / Mangifera indica / AU / AY615185
Neofusicoccum macroclavatum / WAC12444 / Eucalyptus globulus / AU / DQ093196
Neofusicoccum pennatisporum / MUCC510 / Allocasuarina fraseriana / AU / EF591925
Neofusicoccum protearum / STE-U 4368 / proteaceae / SAfr. / AF452542
Neoscytalidium dimidiatum / DISTEF-ND1 / Citrus / Italy / GQ330902
Neoscytalidium dimidiatum / DISTEF-ND2 / Citrus / Italy / GQ330903
Phaeobotryosphaeria citrigena / ICMP 16818 / NZ / EU673329
Phaeobotryosphaeria visci / CBS 122527 / Ukraine / EU673327
Sphaeropsis sapinea / SS31 / China / HM467681
Teratosphaeria keanei / BRIP525933b / Eucalyptus globulus x Eucalyptus camaldulensis / AU / HM012878
Cladosporium
Cladosporium cladosporioides / F12 / China / HQ380766
Cladosporium cucumerinum / CBS 171.52 / Cucumis / Netherlnd / HM148072
Cladosporium herbarum / wb221 / Austria / AF455517
Cladosporium macrocarpum / CPC 12759 / Spinacea / USA / EF679380
Cladosporium magnusianum / ATCC 200946 / USA / AF393712
Cladosporium tenellum / CPC 12053 / EF679401
Cladosporium tenellum / CPC 11813 / EF679399
Cladosporium tenellum / mcp1920 / Cultured from S. quinqeflora articles / AU / JN983453
Davidiella dianthi / ATCC 56129 / USA / AF393698
Davidiella macrospora / CBS 138.40 / Iris / USA / AF297231
Davidiella tassiana / cla063
Graphiopsis chlorocephala / CBS 100405 / Paeonia sp. / NZ / EU009456
Mycosphaerella acaciigena / CPC 13350 / Eucalyptus camaldulensis X E. urophylla / Venezuela / EF394823
Mycosphaerella grandis / TC 0.41 / Eucalyptus globulus / AU / DQ665663
Mycosphaerella macrospora / Myma 1 / Iris / USA / AF297231
Rachicladosporium luculiae / CPC 11407 / Luculia sp. / NZ / EU040237
Teratosphaeria bellula / STE-U 1321 / Proteaceae / SAfr. / AY260092
Verrucocladosporium dirinae / CBS 112794 / Dirina massiliensis / UK / EU040244
Fusarium
Calonectria australiensis / CBS 112954 / GQ280552
Calonectria colhounii / CBS 293.79 / GQ280565
Calonectria indusiata / CBS 114684 / GQ280659
Fusarium acuminatum / NRRL 54216 / USA / HM068324
Fusarium chlamydosporum / SGLAf44 / Taxus / Mexico / EU715615
Fusarium equiseti / H02-765S / sorghum / USA / EU595566
Fusarium incarnatum / NJM 0177 / Penaeus monodon / Vietnam / AY633745
Fusarium oxysporum / FO-09 / China / AY928416
Fusarium oxysporum / 13 / sugar beet / China / EU594568
Fusarium solani / TS08-95-3 / Larix / China / AB470848
Fusarium sporotrichioides / LF8 / China / HM805048
Fusarium tricinctum / T06 / China / FJ459974
Fusarium sp. / N53 / cheese / Italy / GQ169492
Fusarium sp. / K23 / China / EU236705
Fusarium sp. / NRRL 45998 / USA / GQ505762
Fusarium sp. / MS6p50-29 / HQ630976
Fusarium sp. / MOD-13 / EU589150
Fusarium sp. / mcp0708 / Cultured from S. quinqeflora gall / AU / JN983445
Fusarium / mcp0910 / Cultured from S. quinqeflora gall / AU / JN983446
Fusarium / mcp1112 / Cultured from S. quinqeflora articles / AU / JN983447
Fusarium / MCP13E09 / Cultured from S. quinqeflora articles / AU / JN983448
Fusarium / mcp1516 / Cultured from S. quinqeflora articles / AU / JN983449
Fusarium / mcp1718 / Cultured from S. quinqeflora articles / AU / JN983450
Fusarium / mcp2324 / Cultured from S. quinqeflora gall / AU / JN983451
Fusarium / mcp2930 / Cultured from S. quinqeflora articles / AU / JN983452
Gibberella avenacea / FA11 / Canada / EU255801
Gibberella avenacea / OTU140 / Canada / GU934530
Gibberella pulicaris / xsd08118 / Poplar / China / FJ481029
Gibberella sp. / FPGLXJ02 / Fritillaria / China / FJ196601
Hypocrea koningii / 16-M-1 / soil / Vietnam / EU076928
Metarhizium anisopliae / xsd08103 / mushroom / China / FJ481014
Physa globuliferum / China / FJ418873
Uncultured soil fungus / clone 167-32 / USA / DQ421022
Uncultured soil fungus / clone 205-35 / USA / DQ421025
Paraconiothyrium
Lophiostoma arundinis / CBS 621.86 / Germany / AJ496633
Paraconiothyrium variable / mcp0102 / Cultured from S. quinqeflora gall / AU / JN983440
Paraconiothyrium variable / mcp020 / Cultured from S. quinqeflora articles / AU / JN983441
Paraconiothyriumvariabile / FR668020
Paraphaeosphaeria pilleata / USA / AF250821
Paraphaeosphaeria michotii / USA / AF250817
Paraconiothyriumvariabile / STE-U 5848 / SAfr. / EU295645
Camarosporium brabeji / CBS:123026 / Protea sp. / SAfr. / EU552105
Coniothyrium fuckelii / 09-005 / S. Korea / JN017200
Coniothyrium wernsdorffiae / 24L-217-Mexico / Rosa sp. / Mexico / AY904058
Paraconiothyrium africanum / STE-U 6316 / SAfr. / EU295650
Paraconiothyrium brasiliense / STE-U 6301 / SAfr. / EU295638
Coniothyrium minitans / CBS 859-71 / UK / AJ293810
Paraconiothyrium sporulosum / WL-1 / water / Japan / AB303549
Paraconiothyrium variabile / STE-U 6314 / SAfr. / EU295643
Penicillium/Exophiala
Aspergillus arenarius / NRRL 5012 / USA / EU021615
Aspergillus granulosus / NRRL 1932 / USA / EF652430
Byssochlamys fulva / T152 / Thailand / AY753341
Chaetothyriales sp. / IMI 401915 / AB434914
Cladophialophoraminutissima / UAMH 10711 / bryophyta / Canada / EF016385
Cladophialophora modesta / CBS 985.96 / GU225939
Coccodinium bartschii / CPC 13861 / Canada / EU019265
Cyphellophora hylomeconis / CBS 113311 / Hylomecon vernalis / Korea / EU035415
Cyphellophora eugeniae / CBS 124105 / Eugenia uniflora / Brasil / FJ839617
Emericella fruticulosa / NRRL 4903 / USA / EF652483
Exophiala mesophila / CBS 402.95 / Germany / GU225941
Exophiala salmonis / CBS 157.67 / Belgium / AF050274
Exophiala eucalyptorum / CPC 11261 / Eucalyptus / NZ / EU035417
Exophilia sp / G21L12081209 / Cultured from S. quinqeflora articles / AU / JN983437
Penicillium adametzioides / 432 / Spain / DQ681325
Penicillium camemberti / China / EU497941
Penicillium glabrum / STE-U 6577 / Apple / SAfr. / FJ491804
Penicillium glabrum / 909 / Spain / DQ681321
Penicillium purpurescens / NRRL 720 / USA / AF033408
Penicillium spinulosum / CCF3823 / soil / Czech / FJ430767
Penicillium thomii / IUVV D7P3-333 / grapes / France / FR670338
Penicillium thomii / FRR 2077 / AY373934
Penicillium sp / mcp2526 / Cultured from S. quinqeflora articles / AU / JN983438
Penicillium sp / mcp2728 / Cultured from S. quinqeflora gall / AU / JN983439
Uncultured fungus / clone IVS3-27 / EU516888
Pestalotiopsis
Bartalinia pondoensis / CMW:31067 / SAfr. / GU291796
Discosia pini / MAFF 410149 / Pinus densiflora / Japan / AB594776
Discostroma stoneae / NBRC 32690 / Japan / AB594797
Discostroma tricellulare / MAFF237482 / Rhododendron indicum / Japan / AF377285
Discostroma fuscellum / 10071 / Rosa sp. / Canada / AF377284
Pestalosphaeria hansenii / ATCC48245 / Pinus carribaea / PNG / AF377290
Pestalotia lambertiae / PSHI2004Endo86 / Neodypsis decaryi Jum / China / DQ813422
Pestalotia rhododendri / ATCC24306 / Rhododendron / Italy / AF377294
Pestalotiopsis adusta / ICMP 5434 / China / AF409955
Pestalotiopsis bicilia / BRIP 25718 / AF409973
Pestalotiopsis calabae / MAFF 237935 / Cocos nucifera / Japan / AB491977
Pestalotiopsis disseminata / HKUCC 255 / China / AF409976
Pestalotiopsis microspora / T62 / China / FJ459945
Pestalotiopsis neglecta / EY6D / China / EF055208
Pestalotiopsis olivacea / PSHI2002Endo839 / Podocarpus nagi / China / AY681488
Pestalotiopsis uvicola / BRIP 25613 / China / AF409974
Pestalotiopsis sp. / 3T29AA / tick / USA / FJ861448
Pestalotiopsis sp / mcp0304 / Cultured from S. quinqeflora articles / AU / JN983442
Pestalotiopsis sp / mcp2122 / Cultured from S. quinqeflora gall / AU / JN983444
Pestalotiopsis sp / mcp0506 / Cultured from S. quinqeflora articles / AU / JN983443
Truncatella angustata / ATCC96024 / Prunus avium / USA / AF377300