Supplemental Table 2. Sequence Comparison of Human and Porcine Collagen Type Iα2 Chain

Supplemental Table 2. Sequence Comparison of Human and Porcine Collagen Type Iα2 Chain

Supplemental table 2. Sequence comparison of human and porcine collagen Type Iα2 chain.

Number / Amino acid sequence / Number
human
porcine
human
porcine / 1
1
31
31 / MLSFVDTRTL LLLAVTLCLA TCQSLQEETV
MLSFVDTRTL LLLAVTSCLA TCQSLQEATA
RKGPAGDRGP RGERGPPGPP GRDGEDGPTG
RKGPTGDRGP RGERGPPGPP GRDGDDGI PG / 30
30
60
60
human
porcine
human
porcine / 61
61
91
91 / PPGPPGPPGP PGLGGNFAAQ YDGKGVGLGP
PPGPPGPPGP PGLGGNFAAQ YDGKGVGAGP
GPMGLMGPRG PPGAAGAPGP QGFQGPAGEP
GPMGLMGPRG PPGAVGAPGP QGFQGPAGEP / 90
90
120
120
human
porcine
human
porcine / 121
121
151
151 / GEPGQTGPAG ARGPAGPPGK AGEDGHPGKP
GEPGQTGPAG ARGPPGPPGK AGEDGHPGKP
GRPGERGVVG PQGARGFPGT PGLPGFKGIR
GRPGERGVVG PQGARGFPGT PGLPGFKGIR / 150
150
180
180
human
porcine
human
porcine / 181
181
211
211 / GHNGLDGLKG QPGAPGVKGE PGAPGENGTP
GHNGLDGLKG QPGAPGVKGE PGAPGENGTP
GQTGARGLPGERGRVGAPGPAGARGSDGSV
GQTGARGLPGERGRVGAPGPAGARGNDGSV / 210
210
240
240
human
porcine
human
porcine / 241
241
271
271 / GPVGPAGPIG SAGPPGFPGAPGPKGEI GAV
GPVDPAGPIG SAGPPGFPGAPGPKGELGPV
a
GNAGPAGPAGPRGEVGLPGLSGPVGPPGNP
GNPGPAGPAGPRGEVGLPGVSGPVGPPGNP / 270
270
300
300
human
porcine
human
porcine / 301
301
331
331 / GANGLTGAKGAAGLPGVAGAPGLPGPRGIP
GANGLPGAKGAAGLPGVAGAPGLPGPRGIP
GPVGAAGATGARGLVGEPGPAGSKGESGNK
GPAGAAGATGARGLVGEPGPAGSKGESGNK / 330
330
360
360
human
porcine
human
porcine / 361
361
391
391 / GEPGSAGPQGPPGPSGEEGKRGPNGEAGSA
GEPGAAGPQGPPGPSGEEGKRGPNGEVGSA
GPPGPPGLRGSPGSRGLPGADGRAGVMGPP
GPPGPPGLRGNPGSRGLPGADGRAGVMGPP / 390
390
420
420
human
porcine
human
porcine / 421
421
451
451 / GSRGASGPAGVRGPNGDAGRPGEPGLMGPR
GSRGP TGPAGVRGPNGDSGR PGEPGLMGPR
b1
GLPGSPGNI GPAGKEGPVGLPGIDGRPGPI
GFPGSPGNVGPAGKEGPAGLPGIDGRPGPI / 450
450
480
480
human
porcine
human
porcine / 481
481
511
511 / GPAGARGEPGNIGFPGPKGPTGDPGKNGDK
GPAGARGEPGNIGFPGPKGPTGDPGKNGEK
GHAGLAGARGAPGPDGNNGAQGPPGPQGVQ
GHAGLAGARGAPGPDGNNGAQGPPGPQGVQ / 510
510
540
540
human
porcine
human
porcine / 541
541
571
571 / GGKGEQGPPGPPGFQGLPGP SGPAGEVGKP
GGKGEQGPAGPPGFQGLPGPAGTAGEVGKP
GERGLHGEFG LPGPAGPRGERGPPGESGAA
GERGI P GEFG LPGPAGPRGERGPPGESGAA
b2 / 570
570
600
600
human
porcine
human
porcine / 601
601
631
631 / GPTGPIGSRGPSGPPGPDGNKGEPGVVGAV
GPAGPIGSRGPSGPPGPDGNKGEPGVLGAP
GTAGPSGPSGLPGERGAAGIPGGKGEKGEP
GTAGPSGPSGLPGERGAAGIPGGKGEKGET
/ 630
630
660
660
human
porcine
human
porcine / 661
661
691
691 / GLRGE I GNPGRDGARGAPGAVGAPGPAGAT
GLRGDVGSPGRDGARGAPGAVGAPGPAGAN
b3
GDRGEAGAAGPAGPAGPRGSPGERGEVGPA
GDRGEAGPAGPAGPAGPRGSPGERGEVGPA / 690
690
720
720
human
porcine
human
porcine / 721
721
751
751 / GPNGFAGPAGAAGQPGAKGERGAKGPKGEN
GPNGFAGPAGAAGQPGAKGERGTKGPKGEN
GVVGPTGPVGAAGPAGPNGPPGPAGSRGDG
GPVGPTGPVGAAGPAGPNGPPGPAGSRGDG / 750
750
780
780
human
porcine
human
porcine / 781
781
811
811 / GPPGMTGFPGAAGRTGPPGPSGISGPPGPP
GPPGATGFPGAAGR I GPPGPSGISGPPGPP
GPAGKEGLRGPRGDQGPVGRTGEVGAVGPP
GPAGKEGLRGPRGDQGPVGRTGET GAS GPP / 810
810
840
840
human
porcine
human
porcine / 841
841
871
871 / GFAGEKGPSGEAGTAGPPGTPGPQGLLGAP
GFAGEKGPSGEP GTAGPPGTPGPQGI LGAP
GILGLPGSRGERGLPGVAGAVGEPGPLGIA
GFLGLPGSRGERGLPGVAGSVGEPGPLGIA / 870
870
900
900
human
porcine
human
porcine / 901
901
931
931 / GPPGARGPPGAVGSPGVNGAPGEAGRDGNP
GPPGARGPPGAVGNPGVNGAPGEAGRDGNP
GNDGPPGRDGQPGHKGERGYPGNI GPVGAA
GSDGPPGRDGQAGHKGERGYPGNPGPAGAA / 930
930
960
960
human
porcine
human
porcine / 961
961
991
991 / GAPGPHGPVGPAGKHGNRGE TGPSGPVGPA
GAPGPQGAVGPAGKHGNRGEPGPAGSVGPA
GAVGPRGPSGPQGIRGDKGEPGEKGPRGLP
GAVGPRGPSGPQGIRGEKGEPGDKGPRGLP / 990
990
1020
1020
human
porcine
human
porcine / 1021
1021
1051
1051 / GLKGHNGLQGLPGI AGHHGDQGAPGSVGPA
GLKGHNGLQGLPGLAGHHGDQGAPGPVGPA
GPRGPAGPSGPAGKDGRTGHPGTVGPAGIR
GPRGPAGPSGPAGKDGRTGQPGAVGPAGIR / 1050
1050
1080
1080
human
porcine
human
porcine / 1081
1081
1111
1111 / GPQGHQGPAGPPGPPGPPGPPGVSGGGYDF
GSQGS QGPAGPPGPPGPPGPPGPSGGGYDF
GYDGDFYRADQPRSAPSLRPKDYEVDATLK
GYEGDFYRADQPRSP PSLRPKDYEVDATLK / 1110
1110
1140
1140
human
porcine
human
porcine / 1141
1141
1171
1171 / SLNNQIETLLTPEGSRKNPARTCRDLRLSH
SLNNQIETLLTPEGSRKNPARTCRDLRLSH
PEWSSGYYWIDPNQGCTMDAIKVYCDFSTG
PEWSSGYYWIDPNQGCTMDAIKVYCDFSTG / 1170
1170
1200
1200
human
porcine
human
porcine / 1201
1201
1231
1231 / ETCIRAQPENIPAKNWYRSSKDKKHVWLGE
ETCIRAQPENIPAKNWYRNSKVKKHVWLGE
TINAGSQFEYNV EGVTSKEMATQLAFMRLL
TINGGTQFEYNMEGVTTKEMATQLAFMRLL / 1230
1230
1260
1260
human
porcine
human
porcine / 1261
1261
1291
1291 / ANYASQNITYHCKNSIAYMDEETGNLKKAV
ANHASQNITYHCKNSIAYMDEETGNLKKAV
ILQGSNDVELVAEGNSRFTYTVLVDGCSKK
ILQGSNDVELVAEGNSRFTYTVLVDGCSKK / 1290
1290
1320
1320
human
porcine
human
porcine / 1321
1321
1251
1251 / TNEWGKTIIEYKTNKPSRLPFLDIAPLDIG
TNEWRKTIIEYKTNKPSRLPI LDIAPLDIG
GADQEF FVDI GPVCFK
DADQEVSVDVGPVCFK / 1350
1250
1366
1366

BLAST search result: sequence identity 1280/1366 (94%), positives hits1311/1366 (95%). Signal sequence, N-Propeptide and N-Propeptideare absent in mature collagen and the difference locus in these region have no role in immunogenicity or antigenicity. Mature collagen. Difference locus. Similar locus

a: At position 244 of the human peptide, glycine (Gly-Pro-Ala) leads to helix formation. In the porcine peptide, there is an aspartic acid residue at this position (Asp-Pro-Ala), which precludes a helix structure, that is likely to be a antigenic determinant.

b1, b2 and b3:It will be easier to recognize a single Gly-X-Y triplet at which both X and Y residues diverge between human and porcine