Supplemental Table 2. Regions that differed from cluster I and II. 1 indicates the gain of the region, -1 the loss and 0 a normal copy.

Clone / bac-loc / chromosome / Case 18 Cluster I / Case 10
Cluster I / Case 30 Cluster I / Case 17 Cluster I / Case 16 Cluster I / Case 8 Cluster I / Case 12 Cluster I / Case 24 Cluster II / Case 21 Cluster II / Case 1 Cluster II / Case 26 Cluster II / Case 22 Cluster II / Case 27 Cluster II
CTB-14E10 / 1p36.33 / 1 / 0 / 0 / 0 / 0 / 0 / 0 / 0 / 0 / 1 / 1 / 1 / 0 / 1
RP11-434B12 / 2p25.1 / 2 / 0 / -1 / 0 / 0 / 0 / 0 / 0 / 0 / 1 / 1 / 0 / 1 / 1
RP11-83M8 / 2p25.1 / 2 / 0 / 0 / 0 / 0 / 0 / 0 / 0 / 0 / 1 / 1 / 1 / 0 / 1
RP1-42M2 / 7p22.1 / 7 / 0 / 0 / 0 / 0 / 0 / 0 / 0 / 0 / 1 / 1 / 1 / 1 / 0
RP4-607J2 / 7p22.3 / 7 / 0 / -1 / 0 / 0 / 0 / 0 / 0 / 1 / 1 / 1 / 1 / 1 / 1
RP11-3º20 / 8q24.21 / 8 / 0 / 0 / 0 / 0 / 0 / 1 / 1 / 1 / 1 / 1 / 1 / 1 / 1
RP3-466A11 / 11q12.2 / 11 / 0 / 0 / -1 / 0 / 0 / 0 / 0 / 0 / 1 / 1 / 1 / 1 / 1
RP11-147G6 / 11q13.1 / 11 / 0 / 0 / 0 / 0 / 0 / 0 / 0 / 0 / 1 / 1 / 0 / 1 / 1
RP11-304L19 / 16p13.3 / 16 / 0 / 0 / 0 / -1 / 0 / 0 / 0 / 0 / 0 / 1 / 1 / 1 / 1
RP11-77K12 / 16q23.1 / 16 / 0 / 0 / 0 / 0 / 0 / 0 / 0 / 1 / 1 / 1 / 1 / 0 / 0
RP11-533D19 / 16q24.3 / 16 / 0 / 0 / 0 / 0 / 0 / 0 / 0 / 0 / 1 / 1 / 0 / 1 / 1
RP11-524F11 / 17p11.2 / 17 / 0 / 0 / 0 / 0 / 0 / 0 / 1 / 1 / 1 / 1 / 1 / 1 / 1
RP11-196E5 / 17q25.1 / 17 / 0 / 0 / 0 / 0 / 0 / 0 / 0 / 0 / 1 / 1 / 1 / 1 / 0
RP11-478P5 / 17q25.1 / 17 / 0 / 0 / 0 / 0 / 0 / 0 / 0 / 0 / 1 / 1 / 0 / 1 / 1
RP11-141D15 / 17q25.3 / 17 / 0 / 0 / 0 / 0 / 0 / 0 / 0 / 0 / 1 / 1 / 1 / 1 / 1
CTD-3149D2 / 19p13.11 / 19 / 0 / 0 / 0 / 0 / -1 / 0 / 0 / 0 / 1 / 1 / 1 / 1 / 1
RP11-565J3 / 19p13.3 / 19 / 0 / 0 / 0 / 0 / 0 / 0 / -1 / 0 / 1 / 1 / 1 / 1 / 0
RP11-268O21 / 19p13.3 / 19 / 0 / 0 / 0 / 0 / 0 / 0 / 0 / 0 / 1 / 1 / 1 / 1 / 1
RP11-569M1 / 19q13.2 / 19 / 0 / 0 / 0 / 0 / -1 / 0 / 0 / 0 / 0 / 1 / 1 / 1 / 1
RP11-10I11 / 19q13.41 / 19 / 0 / 0 / 0 / 0 / 0 / 0 / 0 / 0 / 0 / 1 / 1 / 1 / 1
RP4-599I11 / 20p13 / 20 / 0 / 0 / -1 / 0 / 0 / 0 / 0 / 1 / 0 / 1 / 1 / 1 / 0
RP11-351D2 / 21q22.3 / 21 / 0 / 0 / 0 / 0 / 1 / 0 / 0 / 0 / 1 / 1 / 1 / 1 / 1
RP11-178H12 / 21q22.3 / 21 / 0 / 0 / 0 / 1 / 0 / 0 / 0 / 0 / 1 / 1 / 1 / 1 / 1
XX-461k10 / 22q11.21 / 22 / 0 / 0 / -1 / 0 / 0 / 0 / 0 / 0 / 1 / 1 / 0 / 1 / 1
RP5-925J7 / 22q13.32 / 22 / 0 / 0 / 0 / 0 / 1 / 0 / 0 / 1 / 1 / 1 / 1 / 1 / 1
CTA-799F10 / 22q13.33 / 22 / 0 / 0 / 0 / 0 / 0 / 0 / 0 / 0 / 1 / 1 / 1 / 1 / 1

1