Supplementary table 1. Sugarcane clones found in the SUCEST database using as bait A. thalianaand Zea maysTFs previously described as regulators of lignin and secondary cell wall biosynthesis. Only the five highest E-values are shown.In the column Best Hits, the identification in the parenthesis indicate the genes identified in the supplementary figures S1-S4.
BaitfromA. thaliana / Number of clones found in the SUCEST(E-value ≤ e-05) / Best Hits / Similarity (%)* / E-value
AtMYB61 (AT1G09540) / 58 / SCJFRZ2015F02.g (ShMYB61)
SCMCRT2105A02.g
SCQGST1032D08.g
SCACST3159E04.g
SCQGST1032A06.g / 86
57
70
75
72 / 5e-75
1e-59
1e-59
4e-59
1e-52
AtMYB103 (AT1G63910) / 100 / SCQGST3122C03.g
SCQGST1032A06.g (ShMYB103)
SCEZHR1086A05.g
SCBFFL1143H05.g
SCJLFL1047D02.g / 97
97
88
100
83 / 6e-68
1e-67
4e-63
4e-52
4e-52
AtMYB85 (AT4G22680) / 58 / SCBFAM2120A10.g (ShMYB85)
SCCCLR1C05B03.g
SCCCLB2010A10.g
SCJFRZ2015F02.g
SCAGRT2041D10.g / 80
80
83
78
80 / 5e-55
4e-54
6e-54
1e-51
2e-51
AtMYB46 (AT5G12870) / 56 / SCJFRZ2015F02.g
SCQGST1032D08.g
SCMCRT2105A02.g
SCACST3159E04.g
SCUTRZ3103F02.g (ShMYB46/83) / 87
87
87
87
81 / 1e-47
5e-47
2e-46
2e-46
1e-31
AtMYB83 (AT3G08500) / 56 / SCQGST1032D08.g
SCACST3159E04.g
SCMCRT2105A02.g
SCJFRZ2015F02.g
SCQGST1032A06.g / 85
87
88
87
83 / 7e-50
4e-47
9e-47
9e-47
1e-44
AtMYB58 (AT1G16490) / 57 / SCCCLB1002G05.g (ShMYB58/63)
SCCCRZ3001B03.g
SCJLRZ1019A02.g
SCBFAM2120A10.g
SCAGRT2041D10.g / 82
89
54
83
83 / 5e-52
2e-51
1e-48
3e-46
2e-45
AtMYB63 (AT1G79180) / 57 / SCCCLB1002G05.g (ShMYB58/63)
SCJLRZ1019A02.g
SCCCRZ3001B03.g
SCBFAM2120A10.g
SCSGFL5C03A02.g / 82
60
70
75
80 / 2e-55
5e-53
33-52
4e-47
2e-46
ZmMYB42 (GRMZM2G419239) / 100 / SCAGRT2041D10.g (ShMYB42)
SCUTSD2087B12.g
SCJLHR1026B11.g
SCSGCL6070A06.g
SCUTSD2086A09.g / 81
85
79
73
95 / 5e-91
3e-82
3e-79
5e-78
3e-74
ZmMYB31 (GRMZM2G050305) / 100 / SCMCSD2059H10.g
SCQGST3155B05.g
SCEPLR1051B08.g
SCCCLR1C05B03.g (ShMYB31)
SCAGRT2041D10.g / 78
93
58
46
91 / 4e-94
9e-89
6e-80
5e-79
1e-78
AtMYB52 (AT1G17950) / 59 / SCMCRT2105F02.g
SCEQSB1C11G12.g
SCSBFL4066E09.g (ShMYB52/54)
SCEPAM1017F06.g
SCEZHR1047E04.g / 89
94
90
72
72 / 6e-50
1e-49
2e-48
8e-33
2e-32
AtMYB54 (AT1G73410) / 57 / SCMCRT2105F02.g
SCEQSB1C11G12.g
SCSBFL4066E09.g (ShMYB52/54)
SCEPAM1017F06.g
SCEZHR1047E04.g / 85
89
85
71
71 / 8e-47
5e-46
9e-45
4e-32
1e-31
AtNST1 (AT2G46770) / 51 / SCEQRT1031E06.g
SCCCSB1002A01.g (ShNST1-2)
SCCCCL5072D12.g
SCEZHR1086A06.g
SCCCCL4009H05.g / 60
72
70
71
77 / 3e-80
3e-74
2e-59
3e-57
6e-50
AtNST2 (AT3G61910) / 53 / SCEQRT1031E06.g
SCCCSB1002A01.g (ShNST1-2)
SCCCCL5072D12.g
SCEZHR1086A06.g
SCCCCL4009H05.g / 64
77
78
76
88 / 4e-76
1e-74
4e-63
5e-61
9e-55
AtSND1/NST3 (AT1G32770) / 51 / SCEQRT1031E06.g
SCCCSB1002A01.g (ShNST1-2)
SCCCCL5072D12.g
SCEZHR1086A06.g
SCCCCL4009H05.g / 82
81
74
80
80 / 3e-78
6e-78
2e-66
4e-64
1e-56
AtVND1 (AT2G18060) / 100 / SCEZHR1086A06.g (ShVND1-2-3)
SCVPCL6045D10.g
SCSBST3096G06.g
SCSGST3120D12.b
SCCCCL4009H05.g / 87
85
92
78
74 / 2e-88
2e-65
1e-63
8e-62
2e-59
AtVND2 (AT4G36160) / 100 / SCEZHR1086A06.g (ShVND1-2-3)
SCVPCL6045D10.g
SCSBST3096G06.g
SCSGST3120D12.b
SCCCCL4009H05.g / 80
86
91
78
73 / 2e-87
2e-64
1e-63
1e-61
3e-59
AtVND3 (AT5G66300) / 100 / SCEZHR1086A06.g (ShVND1-2-3)
SCVPCL6045D10.g
SCSBST3096G06.g
SCSGST3120D12.b
SCCCCL4009H05.g / 87
85
86
78
73 / 4e-79
4e-63
1e-59
9e-58
3e-57
AtVND6 (AT5G62380) / 53 / SCEZHR1086A06.g
SCEQRT1031E06.g
SCCCSB1002A01.g
SCCCCL5072D12.g
SCCCCL4009H05.g / 88
73
72
75
82 / 1e-71
7e-61
1e-60
5e-57
1e-50
AtVND7 (AT1G71930) / 49 / SCEZHR1086A06.g
SCEQRT1031E06.g
SCCCSB1002A01.g
SCCCCL5072D12.g
SCEPLB1042D02.g / 81
66
65
73
63 / 1e-63
1e-52
3e-52
4e-49
5e-42
AtVNI2 (AT5G13180) / 53 / SCCCLR2003C07.g
SCEQRT1024G08.g
SCCCLR1C04H01.g
SCCCCL4014A04.g
SCEZRT2023G12.g (ShVNI2) / 65
64
61
64
63 / 5e-47
3e-46
1e-44
1e-43
4e-43
AtKNAT7 (AT1G62990) / 17 / SCEZLB1006E02.g (ShKNAT7)
SCEPRT2048D04.g
SCEQRT2095E01.g
SCCCAM2001D09.g
SCAGLR1021G10.g / 84
79
80
50
51 / 1e-114
1e-91
8e-81
1e-33
1e-32
AtSHN2 (AT5G11190) / 66 / SCRFFL4006A09.g
SCCCLB1026B10.g
SCBFRZ2016H06.g
SCAGLR1043D01.g
SCUTLR1058E01.g / 56
54
60
50
50 / 8e-19
3e-17
6e-17
9e-12
9e-12
*Similarity obtained with amino acidsequences.