Online resource table S3 Methanol-downregulated genes in cDNA microarray analysis
UniGene ID / Annotation / Fold changeMetabolism (17)
Gma.10771.2 / Putative thiamin biosynthesis protein / −2.34663
Gma.12090.1 / Beta-galactosidase / −2.38069
Gma.12584.2 / Putative acyl-CoA synthetase / −2.06897
Gma.1333.1 / Triacylglycerol lipase-like protein / −2.26628
Gma.15664.1 / Putative flavonol reductase / −3.0068
Gma.17305.1 / Putative alpha-hydroxynitrile lyase / −2.10429
Gma.17393.1 / Beta-galactosidase / −2.14035
Gma.1746.1 / Glyoxysomal isocitrate lyase isoform 1 / −4.95959
Gma.17851.1 / Beta-galactosidase / −2.94028
Gma.2096.1 / Putative tropinone reductase / −2.06599
Gma.2096.2 / Putative tropinone reductase / −2.00528
Gma.3557.2 / NADPH-dependent codeinone reductase, putative / −2.40515
Gma.3604.1 / Caffeoyl-CoA O-methyltransferase / −3.29667
Gma.3604.4 / Caffeoyl-CoA O-methyltransferase-like protein / −2.82894
Gma.4408.1 / Putative malate oxidoreductase / −2.17368
Gma.5505.1 / Glyceraldehyde-3-phosphate dehydrogenase C subunit / −2.46969
Gma.8130.1 / Malate synthase / −3.15491
Protein synthesis and degradation (4)
Gma.5831.2 / Translationally controlled tumor-like protein / −3.13
Gma.10782.1 / Elongation factor, putative / −2.4991
Gma.1465.1 / Soybean ribosomal protein S11 / −2.26213
Gma.2185.3 / Peptidylprolyl isomerase / −2.1329
Stress and defense (7)
Gma.5091.1 / Putative laccase / −2.08331
Gma.244.1 / Alcohol dehydrogenase 1 / −2.42852
Gma.17386.1 / ADP-ribosylation factor, putative / −2.07496
Gma.2073.1 / 24kDa protein SC24 / −2.14914
Gma.2833.1 / Chitinase class I / −3.04179
Gma.4332.1 / Disease resistance response protein-like / −2.43936
Gma.6999.3 / PR10-like protein / −2.57265
Cell growth/structure and plant development (2)
Gma.17855.1 / HMG-1-like protein / −2.05644
Gma.2849.2 / Progesterone-binding protein-like / −2.62765
Transport (7)
Gma.1605.3 / Signal recognition particle 54kDa protein 2 / −2.09808
Gma.12632.1 / Peptide transport protein-like / −2.54317
Gma.1705.1 / MTN3 homolog (imported) / −2.25082
Gma.17974.1 / Putative nonspecific lipid-transfer protein / −2.377
Gma.4379 / H+-transporting ATPase protein, putative / −2.06329
Gma.5574.1 / ABC transporter, putative / −2.54345
Gma.7424.1 / MtN3-like protein / −2.93544
Transcription and signal transduction (8)
Gma.18049.2 / Putative transcription factor / −2.3344
Gma.18049.2 / Putative transcription factor / −2.46494
Gma.4182.1 / Putative cytidine deaminase-like / −5.45993
Gma.5646.1 / Regulator of nonsense transcripts 1 homolog / −2.26116
Gma.4624.1 / Putative retroelement pol polyprotein / −2.15868
Gma.2638.1 / Receptor protein kinase-like / −2.56357
Gma.5773.4 / Leucine-rich repeat protein / −4.48514
Gma.5773.4 / Leucine-rich repeat protein / −2.6777
Unknown (215)
Gma.5267.1 / Putative protein / −2.08357
Gma.5294.1 / Expressed protein / −2.92678
Gma.5709.1 / Putative protein / −2.50975
Gma.5813.1 / Expressed protein / −2.01618
Gma.5992.1 / Expressed protein / −2.17005
Gma.6010.1 / Glycine max-transcribed sequences / −2.122
Gma.6211.2 / Putative protein / −2.06089
Gma.6414.1 / Unknown protein / −2.08216
Gma.7013.1 / Putative protein / −3.93002
Gma.7623.1 / Hypothetical protein / −4.74974
Gma.7808.1 / Glycine max-transcribed sequences / −2.65178
Gma.8612.1 / Glycine max-transcribed sequences / −2.16057
Gma.8633.1 / Glycine max-transcribed sequences / −2.43015
Gma.921.1 / Glycine max-transcribed sequences / −3.73
Gma.924.1 / Glycine max-transcribed sequences / −2.30827
GmaAffx.10340.1 / Sequence(s) not in UniGene / −2.01431
GmaAffx.11259.1 / Sequence(s) not in UniGene / −2.87235
GmaAffx.12726.1 / Sequence(s) not in UniGene / −2.11835
GmaAffx.12905.1 / Sequence(s) not in UniGene / −2.00769
GmaAffx.1301.162 / Sequence(s) not in UniGene / −2.53942
GmaAffx.1301.58 / Sequence(s) not in UniGene / −2.79565
GmaAffx.13134.1 / Sequence(s) not in UniGene / −2.44124
GmaAffx.13134.1 / Sequence(s) not in UniGene / −2.03161
GmaAffx.14352.1 / Sequence(s) not in UniGene / −2.38849
GmaAffx.14986.2 / Sequence(s) not in UniGene / −3.404
GmaAffx.15116.1 / Sequence(s) not in UniGene / −2.72891
GmaAffx.16531.1 / Sequence(s) not in UniGene / −2.65655
GmaAffx.18757.1 / Sequence(s) not in UniGene / −2.39519
GmaAffx.18868.1 / Sequence(s) not in UniGene / −2.21878
GmaAffx.2008.3 / Sequence(s) not in UniGene / −2.22619
GmaAffx.20786.2 / Sequence(s) not in UniGene / −2.04606
GmaAffx.20940.1 / Sequence(s) not in UniGene / −2.00351
GmaAffx.21548.1 / Sequence(s) not in UniGene / −2.76888
GmaAffx.23237.1 / Sequence(s) not in UniGene / −2.02053
GmaAffx.23351.1 / Sequence(s) not in UniGene / −2.13134
GmaAffx.23850.2 / Sequence(s) not in UniGene / −2.47533
GmaAffx.24464.1 / Sequence(s) not in UniGene / −3.42286
GmaAffx.2501.2 / Sequence(s) not in UniGene / −3.84333
GmaAffx.25859.1 / Sequence(s) not in UniGene / −3.06224
GmaAffx.2712.1 / Sequence(s) not in UniGene / −2.71729
GmaAffx.27787.1 / Sequence(s) not in UniGene / −3.13467
GmaAffx.27818.1 / Sequence(s) not in UniGene / −2.28206
GmaAffx.28196.2 / Sequence(s) not in UniGene / −2.18526
GmaAffx.28963.1 / Sequence(s) not in UniGene / −2.07354
GmaAffx.29818.1 / Sequence(s) not in UniGene / −11.2884
GmaAffx.29978.1 / Sequence(s) not in UniGene / −2.39049
GmaAffx.30537.1 / Sequence(s) not in UniGene / −4.81903
GmaAffx.30562.1 / Sequence(s) not in UniGene / −5.04831
GmaAffx.30652.1 / Sequence(s) not in UniGene / −2.13006
GmaAffx.32161.1 / Sequence(s) not in UniGene / −2.63086
GmaAffx.32328.1 / Sequence(s) not in UniGene / −2.23173
GmaAffx.3378.1 / Sequence(s) not in UniGene / −5.46661
GmaAffx.35908.1 / Sequence(s) not in UniGene / −2.40609
GmaAffx.36485.1 / Sequence(s) not in UniGene / −2.26527
GmaAffx.36485.1 / Sequence(s) not in UniGene / −2.73681
GmaAffx.39393.1 / Sequence(s) not in UniGene / −7.90337
GmaAffx.40077.1 / Sequence(s) not in UniGene / −2.03993
GmaAffx.41030.1 / Sequence(s) not in UniGene / −2.84115
GmaAffx.41550.1 / Sequence(s) not in UniGene / −2.16677
GmaAffx.42371.1 / Sequence(s) not in UniGene / −2.13535
GmaAffx.42796.1 / Sequence(s) not in UniGene / −2.01017
GmaAffx.43127.1 / Sequence(s) not in UniGene / −2.42258
GmaAffx.45034.1 / Sequence(s) not in UniGene / −2.33705
GmaAffx.45122.1 / Sequence(s) not in UniGene / −2.46983
GmaAffx.46972.1 / Sequence(s) not in UniGene / −2.03218
GmaAffx.50515.1 / Sequence(s) not in UniGene / −2.73073
GmaAffx.50670.1 / Sequence(s) not in UniGene / −2.23155
GmaAffx.51274.1 / Sequence(s) not in UniGene / −8.73505
GmaAffx.51374.1 / Sequence(s) not in UniGene / −2.02285
GmaAffx.51821.1 / Sequence(s) not in UniGene / −2.1811
GmaAffx.53274.1 / Sequence(s) not in UniGene / −2.34378
GmaAffx.5475.1 / Sequence(s) not in UniGene / −2.54501
GmaAffx.5475.2 / Sequence(s) not in UniGene / −2.46887
GmaAffx.54770.1 / Sequence(s) not in UniGene / −2.08024
GmaAffx.55864.1 / Sequence(s) not in UniGene / −2.24783
GmaAffx.56426.1 / Sequence(s) not in UniGene / −2.26844
GmaAffx.57093.1 / Sequence(s) not in UniGene / −4.46514
GmaAffx.57389.1 / Sequence(s) not in UniGene / −2.5607
GmaAffx.57966.1 / Sequence(s) not in UniGene / −3.01784
GmaAffx.5924.1 / Sequence(s) not in UniGene / −5.80713
GmaAffx.5944.3 / Sequence(s) not in UniGene / −2.65674
GmaAffx.5978.1 / Sequence(s) not in UniGene / −2.02518
GmaAffx.59808.1 / Sequence(s) not in UniGene / −2.29017
GmaAffx.60830.1 / Sequence(s) not in UniGene / −2.22702
GmaAffx.62257.1 / Sequence(s) not in UniGene / −2.17362
GmaAffx.62485.1 / Sequence(s) not in UniGene / −2.32827
GmaAffx.63224.1 / Sequence(s) not in UniGene / −3.71719
GmaAffx.64305.1 / Sequence(s) not in UniGene / −2.01988
GmaAffx.650.2 / Sequence(s) not in UniGene / −2.57338
GmaAffx.65048.1 / Sequence(s) not in UniGene / −2.09787
GmaAffx.66301.1 / Sequence(s) not in UniGene / −2.13147
GmaAffx.66945.1 / Sequence(s) not in UniGene / −2.02219
GmaAffx.69311.1 / Sequence(s) not in UniGene / −4.09264
GmaAffx.69533.1 / Sequence(s) not in UniGene / −2.68479
GmaAffx.69544.2 / Sequence(s) not in UniGene / −2.59986
GmaAffx.69694.1 / Sequence(s) not in UniGene / −2.1147
GmaAffx.6991.1 / Sequence(s) not in UniGene / −2.03906
GmaAffx.69994.1 / Sequence(s) not in UniGene / −6.06144
GmaAffx.71596.1 / Sequence(s) not in UniGene / −2.33641
GmaAffx.72549.1 / Sequence(s) not in UniGene / −2.11449
GmaAffx.72610.1 / Sequence(s) not in UniGene / −6.79814
GmaAffx.74014.1 / Sequence(s) not in UniGene / −2.49112
GmaAffx.74681.1 / Sequence(s) not in UniGene / −4.41054
GmaAffx.76524.1 / Sequence(s) not in UniGene / −2.00322
GmaAffx.76524.2 / Sequence(s) not in UniGene / −2.12336
GmaAffx.7751.1 / Sequence(s) not in UniGene / −2.23197
GmaAffx.77737.1 / Sequence(s) not in UniGene / −2.17035
GmaAffx.77758.1 / Sequence(s) not in UniGene / −2.20073
GmaAffx.78313.1 / Sequence(s) not in UniGene / −5.75702
GmaAffx.78368.1 / Sequence(s) not in UniGene / −2.36267
GmaAffx.78433.1 / Sequence(s) not in UniGene / −2.13582
GmaAffx.78443.1 / Sequence(s) not in UniGene / −2.01489
GmaAffx.78443.1 / Sequence(s) not in UniGene / −2.02145
GmaAffx.78456.1 / Sequence(s) not in UniGene / −2.10955
GmaAffx.78465.1 / Sequence(s) not in UniGene / −2.03021
GmaAffx.78729.1 / Sequence(s) not in UniGene / −3.73039
GmaAffx.80474.1 / Sequence(s) not in UniGene / −2.98567
GmaAffx.80899.1 / Sequence(s) not in UniGene / −2.36068
GmaAffx.80899.2 / Sequence(s) not in UniGene / −2.03886
GmaAffx.8108.1 / Sequence(s) not in UniGene / −3.22642
GmaAffx.8111.1 / Sequence(s) not in UniGene / −3.63016
GmaAffx.82055.1 / Sequence(s) not in UniGene / −3.55158
GmaAffx.82759.1 / Sequence(s) not in UniGene / −2.77457
GmaAffx.83919.1 / Sequence(s) not in UniGene / −2.09652
GmaAffx.83968.1 / Sequence(s) not in UniGene / −3.45458
GmaAffx.84418.1 / Sequence(s) not in UniGene / −3.76413
GmaAffx.84528.1 / Sequence(s) not in UniGene / −2.10613
GmaAffx.84557.1 / Sequence(s) not in UniGene / −2.25831
GmaAffx.84569.1 / Sequence(s) not in UniGene / −2.39121
GmaAffx.84921.1 / Sequence(s) not in UniGene / −2.0404
GmaAffx.85134.1 / Sequence(s) not in UniGene / −2.3193
GmaAffx.85760.1 / Sequence(s) not in UniGene / −2.85186
GmaAffx.85836.2 / Sequence(s) not in UniGene / −2.17336
GmaAffx.86629.1 / Sequence(s) not in UniGene / −2.31776
GmaAffx.87012.1 / Sequence(s) not in UniGene / −8.17759
GmaAffx.87485.1 / Sequence(s) not in UniGene / −3.76424
GmaAffx.875.1 / Sequence(s) not in UniGene / −2.8627
GmaAffx.875.2 / Sequence(s) not in UniGene / −2.06338
GmaAffx.87729.1 / Sequence(s) not in UniGene / −2.02336
GmaAffx.88043.1 / Sequence(s) not in UniGene / −2.53502
GmaAffx.88105.1 / Sequence(s) not in UniGene / −4.75709
GmaAffx.89191.1 / Sequence(s) not in UniGene / −2.03244
GmaAffx.8999.2 / Sequence(s) not in UniGene / −2.02781
GmaAffx.90263.1 / Sequence(s) not in UniGene / −3.21958
GmaAffx.90303.1 / Sequence(s) not in UniGene / −2.11677
GmaAffx.90861.1 / Sequence(s) not in UniGene / −2.8313
GmaAffx.90937.1 / Sequence(s) not in UniGene / −2.01489
GmaAffx.90945.1 / Sequence(s) not in UniGene / −2.28714
GmaAffx.91064.1 / Sequence(s) not in UniGene / −2.12607
GmaAffx.91091.1 / Sequence(s) not in UniGene / −3.0597
GmaAffx.91128.1 / Sequence(s) not in UniGene / −2.06662
GmaAffx.91273.1 / Sequence(s) not in UniGene / −4.02782
GmaAffx.91300.1 / Sequence(s) not in UniGene / −2.07672
GmaAffx.91504.1 / Sequence(s) not in UniGene / −2.82152
GmaAffx.91805.1 / Sequence(s) not in UniGene / −2.01304
GmaAffx.91911.1 / Sequence(s) not in UniGene / −2.1086
GmaAffx.91919.1 / Sequence(s) not in UniGene / −2.13208
GmaAffx.92021.1 / Sequence(s) not in UniGene / −3.75757
GmaAffx.92048.1 / Sequence(s) not in UniGene / −2.76428
GmaAffx.92070.1 / Sequence(s) not in UniGene / −2.34707
GmaAffx.92100.1. / Sequence(s) not in UniGene / −2.9718
GmaAffx.92230.1 / Sequence(s) not in UniGene / −3.38124
GmaAffx.92305.1 / Sequence(s) not in UniGene / −2.05254
GmaAffx.92360.1 / Sequence(s) not in UniGene / −2.24254
GmaAffx.92438.1 / Sequence(s) not in UniGene / −2.15086
GmaAffx.92561.1 / Sequence(s) not in UniGene / −2.99585
GmaAffx.92726.1 / Sequence(s) not in UniGene / −3.26733
GmaAffx.92778.1 / Sequence(s) not in UniGene / −4.04989
GmaAffx.92834.1 / Sequence(s) not in UniGene / −4.37056
GmaAffx.92834.1t / Sequence(s) not in UniGene / −4.52246
GmaAffx.92851.1 / Sequence(s) not in UniGene / −2.61815
GmaAffx.93213.1 / Sequence(s) not in UniGene / −2.69834
GmaAffx.93268.1 / Sequence(s) not in UniGene / −4.43274
GmaAffx.93268.1 / Sequence(s) not in UniGene / −3.57175
GmaAffx.93273.1 / Sequence(s) not in UniGene / −2.3028
GmaAffx.93529.1 / Sequence(s) not in UniGene / −3.69275