2
Supplementary Figure 1 Alignments of 11 Pseudogenes from Megaceros aenigmaticus (Mega) with Their Orthologs in Marchantia polymorpha (Mar) and Physcomitrella patens (Phy): atp8, ccmFC, rpl5, rpl6, rps1, rps4, rps7, rps8, rps11, rps12, and sdh3.
Mar_atp8 ------ATGC [4]
Phy_atp8 ------.... [4]
Mega_atp8 CCTCAACTAG ATCAATTTAC GTATTTGACG TAATTCGTTT GGTTATGTGT CTTCCATATG ACTCCCTCTT TACGTATTAT TATATAATTT ACGTATTCTT [100]
[ 110 120 130 140 150 160 170 180 190 200]
[ ...... ]
Mar_atp8 CTCAACTAGA TCAATTTACG TATT--TGAC ACAATTCGTT TGGTTATGCG TGTT-TTATA TGACTTTTTA TGTATTATTA TATAATGATG GATTACCCAA [101]
Phy_atp8 ...... --.... G.....T...... T. .T..-...... G.C...... [101]
Mega_atp8 ..T.TTCTTC .T.T.C.T.T ....CT.ATT CTT....T.A .TC....T.T .A..C....T CTT...A... .-.C...... C...... T.. [199]
[ 210 220 230 240 250 260 270 280 290 300]
[ ...... ]
Mar_atp8 AAT------AAGTCGAATT ATCAAACTAA GAAAACGACT GGTATCGCAG GAAAAAGTAG GCGCGGAGCA GAGCAATGAC CGTGTAGAAC AGGATGTGGT [194]
Phy_atp8 ...------...C..C... C.....T..C ...... AG.. .A.T.....T C....T...... A.A....C ....G..T.. A....T...... T.. [194]
Mega_atp8 ...GAAAAAG ...... T... C...... C ...... A... ----.....C T....T.C.A .T..A...... T..T.. A....G.... .A...... [295]
[ 310 320 330 340 350 360 370 380 390 400]
[ ...... ]
Mar_atp8 TTTCAAAGAA TGTTTTCAAG CCAGTGCAAA CTATCTGTAC TCAAGTGTAT CCGGAGCATC CAAGTGGTGT AAAGGAATGG TCCAACTCGC AAATGCTCAT [294]
Phy_atp8 ...... C...G.TA .....AT.TC ...... G...... T...... C.A...... AA..AG.TT ...... A.. [294]
Mega_atp8 .C..G....------...... T.TC ...CT...... T...... T...... TG...... T...G... .AA..AG.TT ...... A.. [384]
[ 410 420 430 440 450 460 470 480 490 500]
[ ...... ]
Mar_atp8 AAATTGCAAC GAATGAATAA AGATTATGTA TGTTCTTTGG GAGAGATTAG TGTATCACAA GTGATCAAAA AGAACGCACT TTCAACCTTG AGTCCCTCTA [394]
Phy_atp8 C....AA... A...... TC...... C...... A...... C...... A..A.... .A...... TTA...... [394]
Mega_atp8 C...... T A...... TC...... G .....C...... A...... T...... A..C. .A.G...... A....A...... T.... [484]
[ 510 520 530 540 550 560 570 580 590 600]
[ ...... ]
Mar_atp8 CTTATCAAAC CACTTCTCTA GCTTCACGTC AAACCACCGC TCTTAACAAA ATCTATGTTT TACGCGGACA AAAGAGAA-- -CTCTAGCAA AGATAAA-GA [490]
Phy_atp8 ...... T.T ...... T.. ..G...... A...... G..AC.-- -.C....T.. .T..C..-.. [490]
Mega_atp8 ...... ---- .....TGA.. ...GA....G ....TG..A...... C...... C... G.G...C.GC A....GATG. .T..C..A.. [580]
[ 610 620 630 ]
[ . . . ]
Mar_atp8 ACGGACCAAG AAAAAAAAAA ATTTCATGA------[519]
Phy_atp8 ...... A..A ...... G... .A.A.GAATG CGTGA [525]
Mega_atp8 ..C..GA...... G..G..C .CAAT....------[609]
[ 10 20 30 40 50 60 70 80 90 100]
[ ...... ]
Mar_ccmFC ------A TGGTCCAACT ACAGAATTTT TTCTTTTTTC TTATTTTTTT GGTTGTGCTT TGTGGCACAG CAGCACCCAT ACTATTTCAA TGGTTGGTAA [91]
Phy_ccmFC ------...... C... ..T...... C...A...... T..G...... [91]
Mega_ccmFC ATGAAGCAGC .TA.TA..G. ...C..C... A.T..G...T .CC.C.GAA...... C. C.C....TC...... T... ..C...C... ..-.....G. [99]
[ 110 120 130 140 150 160 170 180 190 200]
[ ...... ]
Mar_ccmFC GTAGAGATGT TTCCACAGGT GCTCCTTTTT TTAATGGTAC TATAATACCT ATTTTTACAT CTTTATTACT TGTTTTAGTT TATATACATT CCAGGGGGTT [191]
Phy_ccmFC ...... C...... C.C...... C...... C.T. GC...... G...... A.. [191]
Mega_ccmFC ....TAGA.A .GTT-T...... T.C... .-----.C.. C.C...... CA..G.. T..C..------.A.C .GCG.TT... .TC...AA.. [183]
[ 210 220 230 240 250 260 270 280 290 300]
[ ...... ]
Mar_ccmFC CATGCGCTCT CTGGACGAAG CAAAAAGGAT AGTTTTGATA AGAGCAAGAC CCATTTTATT ACCCAACATA ATTGAGAAAA GCTCACCTAA AAAAATC-CA [290]
Phy_ccmFC ...A...... A.....A..A ..G...... G...... A...... C..A.. ..CT.GAG.T [291]
Mega_ccmFC TTCAG..... A.AA..AGG. ...GG...G. CA.--..G.. ...A...... ------.-...G ....G.GG.G A...... C.. ..CGGAA--- [266]
[ 310 320 330 340 350 360 370 380 390 400]
[ ...... ]
Mar_ccmFC ATATATTTCC TTTTTTCTGG ATGAAAAAGC CTTGTCAATT TTTTCTTTTT TTCGTCAGTT TTTTTTTTCC TTTTTTGTCA GACAGTTCCC GGCCCTTTGT [390]
Phy_ccmFC .A.A..GCAT ...... TCTT T.TT.TTTT. A..T...... TA.... C---AA.T.. A.GGGAGA.T .G.CA.A.TT AGA.TC.TT. T.TGG.G..C [388]
Mega_ccmFC .A.A.CG--- -...A.TC.T T.TTTGTTT. G..--.C..C .C.CTA------AA.TCC A.GAGAGA.T .G.CACA.TT .C..T..TTA T..GG.G..C [352]
[ 410 420 430 440 450 460 470 480 490 500]
[ ...... ]
Mar_ccmFC TTTGTGGGAC AGTATTTTGG T--TTTGTGG TGTCCCACAA AACAAAGTCC GGGACCCTGT CTGACAGTGC CCGGGCCCTC GGGCCTTGTT GT---TGTTT [485]
Phy_ccmFC .....TTTTT .T...... T ACG...T.CT .A..ATCT.. .TAT.G.CG. .AT..GTG.G .AA...AG.A G.CTAGG..T ..AATAGAAA AAAAAA.AAA [488]
Mega_ccmFC .....TTCTT ....CCC..C ACA..CC.CT .ACTATCT.G TCGT.G.CG. ....G.T..G .GAG--AG.. GTATTAGGGT ....T------[435]
[ 510 520 530 540 550 560 570 580 590 600]
[ ...... ]
Mar_ccmFC TTTCATTTTA TTATTATCAA ATTAA----- TGGGAGACTT T--TCATATT TAGAATCTTT CTGTGGTGTA CTTTGTTTTT TCTTCTTTTG TACATTCTTT [578]
Phy_ccmFC AGCGCG.AAG CGGGC.CAG. GAAG.AAGCG CCAAGCG... .GT.GGCC.A AC...AAAAA GAAACAAAG. AA.AAAAAGA AAGAAAA.GC ATTT..A... [588]
Mega_ccmFC ------G CGGGC.CGG. GGA..----G CC..GCG... ---.GGCC.A AC....A--- GGAAAAAAG. TA.AAG------..AC.C [498]
[ 610 620 630 640 650 660 670 680 690 700]
[ ...... ]
Mar_ccmFC TTATC-ATTT CATCATAGGC GCGATAGCTT AGCGAGGCAC AAATTTTCTT --TTTTTGTT TTTCACAA-G CAGAGAAGAC GCGAGCTTAT TATA------[668]
Phy_ccmFC C.T..A.A.A A....A.AAT ATTT.T.A.. TATTT.CTG. ..T...CAAA AACC..C.GC ..CA..G.AA A..CC..A.T TTTG....T. ...TCTCTGC [688]
Mega_ccmFC ------.ACG GG.TTAG--- TTTTCT.... TAT.GTAAG. TTC....--- --.-C.C..C .C.G.T..TA T.ATA...CG CTTG..ACT. .------[574]
[ 710 720 730 740 750 760 770 780 790 800]
[ ...... ]
Mar_ccmFC TCGTCACTGA GAAGAAATAA CTTG------AA TTGGAGTAGA TGTTTTCTTG TTCGCGCTTT ACCGAGTAGA CTGATCACTG TTGGTCACGA [754]
Phy_ccmFC .T.CTTT.TC .C.AGCT..T TC.TCCGTCC CTGAAAAT.G .....A.... .T...... C.. ...A.AA...... GGA...... T.. [788]
Mega_ccmFC --.CT------..T...... ----G.... CC....T..C G.TA..CCT. .A...TG...... A...T.. [632]
[ 810 820 830 840 850 860 870 880 890 900]
[ ...... ]
Mar_ccmFC CTTTCGA--- -AAAGCTCCC GTTAATATGA AGATTTCACA TGGAGGAGTT TGCATCTTTA TTATGGGTGT AATTTTGTCT AACGCAAAAA AGATACAATT [850]
Phy_ccmFC ...... --- -....T.... A.G.C...... A...... T...... C ...A...... G...G.. [884]
Mega_ccmFC ...... TCG A...... A.G..G.... .A...... ----...... ---- ..------.------[687]
[ 910 920 930 940 950 960 970 980 990 1000]
[ ...... ]
Mar_ccmFC TACAGGGAAA ACCCCTTTGG GTTCCGAACT ACATATAGGA AAGGTTCGTA GCACTTTGCG AGGTATTGAT CAATTACATG GACCCACTTT TCACTCCATT [950]
Phy_ccmFC ...TCAATT. TTG.....A. ....T...... GA.AG.A.T .TTG...... C.. ...T...... [984]
Mega_ccmFC ------.- ---G.....- ---...... C...... C-- --.TC..... [727]
[ 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100]
[ ...... ]
Mar_ccmFC TGTGGTAATT TCATTATTTA TAAACCGTCC CTAAAAACCC CATTCATGTT TGAGCATGAT GGATCACGTC CTGCCCTGTT GCAATCCCGG CCTACCGAAG [1050]
Phy_ccmFC ...... G...... T...... AT...... T.. G..T...... A.....T.. G-----..CC AT....--.A .------[1068]
Mega_ccmFC .A....C... CA.....C...... T.C.TT ...... A.. G...... A...... C.....TCA. ------.TC. AT...T--.A ...------[812]
[ 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200]
[ ...... ]
Mar_ccmFC GTGCGAAGGT CTCGACCAAC GGGAGAGGCT TTAGTTCTCG ACCAACGGGA GAGGGAAACT TCTTTGGTCC GAAGGGCCGA AGGCCAGAAA TGGCTTTAGG [1150]
Phy_ccmFC ------. TGTTG....T T.------C AGC.CCT... T---..CA.. CT.AA...G. .------G.AAAAAA. TATAT.T.TT .TTT..C.AC [1139]
Mega_ccmFC ------.T. TGTTG....T TCAC----.. ..CAGC...A T---G.AA.. AC..AG..G. A------..AAA..CG .AT.T.T.G. ..AT..C--- [885]
[ 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300]
[ ...... ]
Mar_ccmFC ATTTCCGCAC ACTTCTTTGC CTTTACGAAA GAAGGGCTTT ACAGTTCTCG AACATAATAG TTTTTCACAT TGGTTGACTA TGTTCCCAGA AAAAAGATTC [1250]
Phy_ccmFC T...TTC..T GG.GACAGAT .A.GGA.... ------..G...... C...... CC...T...... G ...... T [1224]
Mega_ccmFC --..T.C..T TG...AAAAT .A.G----.. ------.TG.. G.----..T. ...CG...-- --..C..--G .--.T..... G...G..... [952]
[ 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400]
[ ...... ]
Mar_ccmFC TATTTTTCAA ATCAAGAAAC GAGCACTACC AAAGTGGCTA TACATACCAA TCTCTTTACG GATCTATATG CTTTG--ATT GGAACTGGAA GTTTTGAAAC [1348]
Phy_ccmFC .C...... T...... A...... GT.. ...T...... A--...... [1322]
Mega_ccmFC ...... TT...... G...... G....A...... T....T-- -TCT...... TC....T T...TTTG...... T..TC. A...C..--- [1046]
[ 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500]
[ ...... ]
Mar_ccmFC AGGCTGGTAT ATGACAGTAA TTAAGCTCCC TTTTATTTTC TAT---ATTT GGATAGGGTT CATTATGGCT TCGTTGGGAG GCTTGCTTAG TCTTTTCCGT [1445]
Phy_ccmFC ...... T..CA... .G..A..A.. ...C...... G.---...... T...C...... A...... G... .T..C.A... [1419]
Mega_ccmFC -...... CT.GCA... .G.....AT. C....C.C.. .G.TGT...... T-.GT....C C...... T.. .TAG....GC .TAG..T... [1144]
[ 1510 1520 1530 ]
[ . . . ]
Mar_ccmFC AAGCTCACTT TTTACAGATT GGATTGGAAT TAA [1478]
Phy_ccmFC C....GG... .A..T...... G. [1452]
Mega_ccmFC .....TG... ..C...A..G AA..G.A... .GG [1177]
[ 10 20 30 40 50 60 70 80 90 100]
[ ...... ]
Mar_rpl5 ATGTTCTCTC CAAATAGAAA TAGACTTGAG TTTCATTACA ATCAGGTAAT ACGTCCAGAT TTATTGCTAA AAATTAATTA TGA------AAACATAA [91]
Phy_rpl5 ...... A...... ------..CCGT ...... G .AA.TT..T...... A...... G...T... ..T.G...... C------C.....T. [85]
Mega_rpl5 .....TA...... ------..CCGT C....C..TG .AA.T...TC .T..TA.... .CG...T... ..C..G...... TATGTCCA TATGC.C.T. [94]
[ 110 120 130 140 150 160 170 180 190 200]
[ ...... ]
Mar_rpl5 TGGAAGTTCC CAGATTGTGT AAAATAATAG TAGTTCCAAA GGCACCCTCA AATT------TCATAAAG AATGTTAAAT TAGCTATGGA AATTGTTTGT [183]
Phy_rpl5 ...... T...... A ...... T ....------.A.....A .....A...... G...... [177]
Mega_rpl5 ...... T.A.C..... G..G..G..- --...... G. C...... T G...GGAATA TTCA.G..GA G....A...... C.A. G...... C.. [191]
[ 210 220 230 240 250 260 270 280 290 300]
[ ...... ]
Mar_rpl5 GGTCAAAAAT TCATACAGAC ACGAAGTAGA GGTTCGACAG GAAAGTCGTT TCGATTCAAT AAATTTGTAT TAAATCAGGA GTCCAAGAGA GACACAGGAT [283]
Phy_rpl5 ...... C... .A....G...... T...... A... .G....GA.. ...A..A.A...... [277]
Mega_rpl5 ...A...... TC...C...... C..GA T...... A.. ..A...... C...... AA. ...A...... -.A... [290]
[ 310 320 330 340 350 360 370 380 390 400]
[ ...... ]
Mar_rpl5 ATGTAACTTA CCTAGCACGA AGCACTCTAC GAGGGCATAT CATGTATAAT TTCTTGGAAA AA----CTTG TTACGATAAT ATCTTTTTAC GATTATCCAG [379]
Phy_rpl5 ....C...... A...... C ...... ----...A ...... C.... [373]
Mega_rpl5 ....C...... C.....A. TCT...... CA...... A...C.. ..T...... C TTATCC...A .C.TAC...... TC...C.. A..A.C.T.A [390]
[ 410 420 430 440 450 460 470 480 490 500]
[ ...... ]
Mar_rpl5 TCAAAATACA AAAAAATTCC ATTCAATTAT CAATGGCAAC GTCGTTGTTA CGATTATTTC CGGAAATACA AGATCATTTC GAGATTTTTG AGCATATTCG [479]
Phy_rpl5 .T...G...... GC...... C...... A...... A...... A [473]
Mega_rpl5 .T.G...... G....C...... T...CG.... A...... A...... C...... [490]
[ 510 520 530 540 550 560 570 580 590 ]
[ ...... ]
Mar_rpl5 AGGGTTTGAT GTAACTATTG TCACTTCAGC CAACACACAA GATGAGACTG TAA---TTTT GTGGAGTGGC TTTTTGCAAA AAG-AGGTTT AG----- [567]
Phy_rpl5 ...... T...... T..A...... G..T .C.---...... T .....A...... -...... ----- [561]
Mega_rpl5 .A...... A...... T...... TG...T...... T .TCATT...... CT.CC. CCCC.CG..G C..C.....C ..TTATA [587]
[ 10 20 30 40 50 60 70 80 90 100]
[ ...... ]
Mar_rpl6 ATGGAAGCTA AATTCTTTTG TTTTTTGGAA ATAATTGGAG TTGGATACAA AGCCAGTACT AACGCACAAG GCTCTATTTT ATATTTAAAA TTAGGATTTA [100]
Phy_rpl6 ...... C. ....A...... G...... TC...... C...... C.... [100]
Mega_rpl6 ------..A .....T.C...... C..TT .GG...... [33]
[ 110 120 130 140 150 160 170 180 190 200]
[ ...... ]
Mar_rpl6 GTCATGAGAT TCGACTTCAA GT---TACAC CTTCAGTTCG CGTTTTTTGC TTAAAG---- CCTAATCTCA TTTGTTGTAC TGGAATGGAT CATCAAAAAG [193]
Phy_rpl6 ...... ---C..GT ..G...... C...---- ...... T...... A...... [193]
Mega_rpl6 .CT.C.G... C.....C... ..AACC..G. ..CG....T. .C..CC.C.. CC....AAAG ...... T...... C...... GC..... GC.A...... [133]
[ 210 220 230 240 250 260 270 280 290 300]
[ ...... ]
Mar_rpl6 TCACTCAATT TGCTGCCATT GTCAAAAGTT GTAAACCTCC TGAAGTTTAT AAAGGGAAGG GTATACAATA TCGAAACGAA ATTATACATA AAAAACAAGG [293]
Phy_rpl6 .A...... GC A...... A..A...... C...... G...... [293]
Mega_rpl6 CA...... C....GC ..----..G...... GAA CT.C-...T. G.TAAAG..C ....G...... G ....G...... G..... [228]
[ 310 ]
[ . ]
Mar_rpl6 AAAAAAAAAA TAA [306]
Phy_rpl6 ...... [306]
Mega_rpl6 ...... G..T C.. [241]
[ 10 20 30 40 50 60 70 80 90 100]
[ ...... ]
Mar_rps1 ATGAGCTTTA GTCAATTATT TCCCAAATAT AATTCTAGTT TTAATCCATT ACGTGGGAGC GCTATACAAT GTTCAGTGAT ACAATTACAA CAAAACAAGG [100]
Phy_rps1 ...... C....C...... C...... G...... C..A...... T.A .A...... G...... T.A [100]
Mega_rps1 ------...C...CA ....T.G... ---...... CC.AA... AT..C...... G....A ...... G...T.. [76]
[ 110 120 130 140 150 160 170 180 190 200]
[ ...... ]
Mar_rps1 TCTTGGTGGA TACAGGACTG AAAACTCCAA TAATTTGTTT CCAACATGAA CTGAAAAGAG TGCCAATCAC CAAGCAAGCA AGGTTTCATT TTGGAATCGA [200]
Phy_rps1 .A...... A...... G...... G ...... A...... A.G ...... AT.. .G.....T.. [200]
Mega_rps1 ..C...... G...... C. G.....T..- --..A....G ...GGG...... C.... .C...... -- -.TA...T...... [170]
[ 210 220 230 240 250 260 270 280 290 300]
[ ...... ]
Mar_rps1 AGATGTAGAA GT-GTT--TG GTGAACCAAA GATGCTTTTG CCAAAACCAT TAGAAATAAA A-----TGTA AAAGAAAACT AGTTTGGATT GAACTAACCA [292]
Phy_rps1 ...... G... ..-...--...... A...... GC ...... GG.. .-----...... C...... C...... [292]
Mega_rps1 ...... G... ..T...AT...... C...... C.. ...T....C. .GT...A.G. .GGGCA...... CC...... C...... [270]
[ 310 320 330 340 350 360 370 380 390 400]
[ ...... ]
Mar_rps1 AGATTTGGCG AAGTGACCA------AAAT TTGGTCAAAG GATTTATTTT GAATTCAGTG AAAGGAGGTT ATGCTGTAGC AATCGCAG-- GTTATATAGC [383]
Phy_rps1 .A...... G------G...... A...... G...... G..C ...... G...... -- ..C...... [383]
Mega_rps1 ...... T AATCTGG...... G. TGC..T.... C.-.C....C C.TA..A... .C...... C..T..G.CG .CGGG..... [369]
[ 410 420 430 440 450 460 470 480 490 500]
[ ...... ]
Mar_rps1 TTTTCTTCCC AAGAGTCTTC TCAGAAGTAG AAAAGTA--- TTTTATAGTC AATGGAGAAT ATTCTCCATT TTGAACATGA AACCAAAAAT AAGTAATATC [480]
Phy_rps1 ...... A ...... G.....A.C...... --- ...C...... C...... CT...... TG.C...... [480]
Mega_rps1 ..C..C.T...... T G...... GA .GG....GTC ...C...... CCCA..A..G ...T....C- --...... C...TC.T- -.A..TCG.G [464]
[ 510 520 530 540 550 560 570 580 590 600]
[ ...... ]
Mar_rps1 GTGGTAAAAG AGATTGGTGA TGGCAAAATA GATTATTTTT CGCCGACAAA ATCACATCAA AAACAAACAA AGTATTTAG- GCGCG----- AAGCTAAAAC [574]
Phy_rps1 ...... C...... C...... G.... .C.G.G...... GT.. ..CG.....- ....A----- ....GG.... [574]
Mega_rps1 ...AA.C..C .A...CA...... C. TC..C...... T.G.... .C...... G ...... G. ..G.AGAG.C .....CGGCG ....GG..G. [564]
[ 610 620 630 640 650 660 670 680 690 700]
[ ...... ]
Mar_rps1 ACTGGCGAAA CATGAAAAAA AACACCAACG T------A-A AAAAAAAATA TATTTTT------TCCGAAAAA GTTCCTACGA [643]
Phy_rps1 ...T..A... ..C...... ATTTT .TCATAA.T. TG....G.CC G.AAAAAAAA AAAAAGAAAA ATTCCAGCTT TATTCCC.TG ....T..... [674]
Mega_rps1 ...T...... AA.GG...... GG.. GCGGACG.-. G..TG....T .T.....GTT TCTGAGGGCG CTGCTCTCTG AC...CGG.G A...... [663]
[ 710 720 730 740 750 760 770 780 790 800]
[ ...... ]
Mar_rps1 CCAAAAAGAC CAAACAGGGC TTTAAGCATT TAGGTCCAAA GCCTCTCGCC TATACTGAGA AAAAACGTGA AACTACTAAA CAATCCACAA AAAATAACGT [743]
Phy_rps1 ..C...... AA.. ..A....GC. ....C...... AA... C.C.....------[732]
Mega_rps1 ...... A...... A.. ..G....GC. ..A...... GAAT. ..C.A------[718]
[ 810 820 830 840 850 860 870]
[ ...... ]
Mar_rps1 ATTTCAACTC AAAGACCAAG GCCAGGGCAA ATCATTAGTT TTTGTTGATG TGTTAACGCA GAGCAGCTAA [813]
Phy_rps1 ------[732]
Mega_rps1 ------[718]
[ 10 20 30 40 50 60 70 80 90 100]
[ ...... ]
Mar_rps4 ATGTTTGCAT CAAGATTTAA AGTTTGTCGC CAAATTTTAG AAAATGTTTG GCAGACCAAA AAACTTACTC TAAAACAAAA ATTCCTTATT T----CGGAG [96]
Phy_rps4 ...CC...... AC...... T ...... C...... A...... GC.A...... ----T.A.. [96]
Mega_rps4 ...CC...... A....T. .AC...... G...... T G...... A..T.G. .T.T.G.... A..G.GG... .GCTA...... CTTTTTA.. [100]
[ 110 120 130 140 150 160 170 180 190 200]
[ ...... ]
Mar_rps4 CTTCAAAAAC A-AAAAAAAA ATAAAAAACA ATCTGACTTT TCCATACAAT TACAAACTAT AAAAAAGTTG TCCCTTTT------TTA TGGAAATTTA [186]
Phy_rps4 ....G....A .----..C...... A.G...... C...... ------...... A... [183]
Mega_rps4 ...... C.A .C.....C.. C.G...... T ...... G... C...A...... C....C...... GA AGTAAGT.A. GA....G... [200]
[ 210 220 230 240 250 260 270 280 290 300]
[ ...... ]
Mar_rps4 CCCATAAAAA AGATGCAAAG GGCTAAAACG CACACTTATA TAGATAAAAA ---AAACAGT TTGCTATTCA ATATAGAAAA AAGATTGGAC GTTATTCTGG [283]
Phy_rps4 .....T...... T...... G...... C ...... ---...T...... T.....G ...... CG ...... A...... [280]
Mega_rps4 ..TC.C...... G..G.G...... -.. ..T...... C C.....G..G GAG...... C ..C.....G...... C [299]
[ 310 320 330 340 350 360 370 380 390 400]
[ ...... ]
Mar_rps4 TTCGTCTTAA TTTTTGTTCA ACTATGTTTC AAGCAAGGCA ACTAATAAGT CATAAAAATA ----TTTGTG TCAATTATAA A----AAGGT CAATATT--- [372]
Phy_rps4 ...... C....T...... T...... G...... A. ----...... ----.T...... --- [369]
Mega_rps4 ..T.C...... ----...... G.TAAG. .GCTG.TAA. G--G.A...... A. CAGA...... G. .TATGGTC...... TTT [393]
[ 410 420 430 440 450 460 470 480 490 500]
[ ...... ]
Mar_rps4 CCTGGTTTTC AAGTATCCAA CGGTGATC-- -TTATATCTA TTCAAGAAAA TTCTTTAGAT TTTTTCAAAT CAAACATAAG AAAAAATTTC CAAACTAACC [469]
Phy_rps4 ...... T....T...... -- -...... T.. ..T.A..T.. ..CA.T.G.. .C..A...... C...... T ..G.G..... [466]
Mega_rps4 .T...... A ...... A...... AT C..C....C. .G....GG.. ..T...CT.. .CCA...... G...G.. .CG..G.--- -.G.AC...T [489]