MSTP 2013 Literature Informatics Session 1

MSTP 2013 Literature Informatics Session 1

June 6, 2013

Literature Informatics:

·  PubMed: http://www.ncbi.nlm.nih.gov/pubmed/

·  MeSH Database: http://www.ncbi.nlm.nih.gov/mesh

·  PubMed Special Queries: http://www.nlm.nih.gov/bsd/special_queries.html

·  GoPubMed: http://www.gopubmed.com/web/gopubmed/

·  CDC HuGE Navigator : http://hugenavigator.net/

·  Gene Prospector: http://hugenavigator.net/HuGENavigator/geneProspectorStartPage.do

·  GWAS Integrator: http://hugenavigator.net/HuGENavigator/gWAHitStartPage.do

·  GLAD4U: http://bioinfo.vanderbilt.edu/glad4u/

·  Quertle: http://quertle.info/

Search Engine for NIH Awarded Grants:

·  NIH RePORTER: http://projectreporter.nih.gov/reporter.cfm

·  Quartile: http://quertle.info/

Text Similarity Search Tools:

·  eTBLAST: http://etest.vbi.vt.edu/etblast3/

·  Jane: http://www.biosemantics.org/jane/

·  Déjà Vu: http://dejavu.vbi.vt.edu/dejavu/duplicate/

·  Other Literature Search Tools: http://www.ncbi.nlm.nih.gov/CBBresearch/Lu/search/

Online Reference Management Tools

·  My NCBI: http://www.ncbi.nlm.nih.gov/sites/myncbi/

Post Publication Metrics:

·  Scopus: http://www.scopus.com/source/eval.url

·  ISI Web of Knowledge: http://goo.gl/rC1HR

·  Publish or Perish (H-index): http://www.harzing.com/pop.htm

Search Engine for Bioinformatics Resources:

·  Search_HSLS MolBio: http://www.hsls.pitt.edu/molbio

PDF Reader

·  Readcube: http://www.readcube.com/

·  Utopia Docs: http://getutopia.com/

Video Tutorials:

·  Searching using MESH terms: http://media.hsls.pitt.edu/media/clres2705/mesh.swf

·  Pubmed Clinical Queries: http://media.hsls.pitt.edu/media/clres2705/scz.swf

·  GoPubmed: http://media.hsls.pitt.edu/media/clres2705/gopubmed.swf

·  HugeNavigator: http://media.hsls.pitt.edu/media/clres2705/asthma.swf

·  Impacr Factors: http://media.hsls.pitt.edu/media/clres2705/impact.swf

·  Quertle: http://media.hsls.pitt.edu/media/molbiovideos/quertle-ac0212.swf

·  Evernote: media.hsls.pitt.edu/media/molbiovideos/refmgmt.swf

·  HSLS MolBio Videos on Literature Informatics: http://www.hsls.pitt.edu/molbio/videos?c=1