Supplementary Table 1: List of genes showing significant differences in triploid versus diploid transcription based on GRASP microarray analysis with 3N:2N signal ratio and Genbank accession numbers. All listed genes showed significant differences in a single microarray replicate. Unknown function array elements are not listed.
Accession Number / 3N:2NTranscription Ratio / Gene Name/suspected
AAB50198 / 2.156 / Serine/threonine protein kinase [Homo sapiens]
AAB94048 / 2.070 / Procollagen C-proteinase enhancer protein [Takifugu rubripes]
AJ006421 / 2.048 / Salmo salar gene encoding cardiac peptide
BG936471 / 1.956 / Atlantic Salmon mRNA sequence similar to Protein translocation complex beta
NP076228 / 1.878 / Nuclear X box binding factor 1 [Mus musculus]
BG933876 / 1.844 / Salmo salar cDNA similar to Ribosomal protein L19 (rpl19)
S56751 / 1.831 / Single stranded D box binding factor 1 - chicken
P48649 / 1.821 / Gamma Crystallin M2 (GAMMA-M2)
NP571450 / 1.819 / Proteasome activator subunit 1 [Danio rerio]
XP035702 / 1.817 / Programmed cell death 2 [Homo sapiens]
NP004441 / 1.796 / Enhancer of rudimentary (Drosophila) homolog [Homo sapiens]
P51644 / 1.765 / ADP-Ribosylation Factor 4
BG934435 / 1.760 / Salmo salar cDNA clone SK1-0737
AAC28367 / 1.751 / S100-like calcium binding protein [Salvelinus fontinalis]
AJ012192 / 1.751 / Oryzias latipes mRNA for cellular nucleic acid binding protein
NP079840 / 1.741 / Riken cDNA 2010012C16 gene [Mus musculus]
AAC04829 / 1.718 / Smad7 [Xenopus laevis]
AAD38904 / 1.714 / ZPA domain containing protein [Oryzias latipes]
AF330142 / 1.711 / Oncorhynchus mykiss actin mRNA
NP036230 / 1.709 / angiopoietin-like 2 precursor; angiopoietin-related protein 2 [Homo sapiens]
BG934624 / 1.702 / Salmo salar cDNA clone SK1-0939, mRNA sequence
NP002009 / 1.700 / Flightless I homolog; flightless I homolog (Drosophila) [Homo sapiens]
BG934561 / 1.687 / Salmo salar cDNA clone SK1-0871 similar to Ig light chain intron, mRNA sequence
NP006348 / 1.681 / Ubiquitin-conjugating enzyme E2E 3 (homologous to yeast UBC4/5) [Homo sapiens]
CAC28060 / 1.672 / Putative transposase [Pleuronectes platessa]
BG934806 / 1.671 / Salmo salar cDNA clone SL1-0072 similar to IgM 5' UTR, mRNA sequence
P48440 / 1.659 / Dolichyl-diphosphooligosaccharide-proteinglycosyltransferase 48 KD subunit
AAK54367 / 1.659 / cytochrome b [Oncorhynchus mykiss]
BG933866 / 1.650 / Salmo salar cDNA clone SK1-0141, mRNA sequence
3HADA / 1.645 / Chain A, Human Heart Short Chain L-3-Hydroxyacyl COA Dehydrogenase
1HLCA / 1.641 / Chain A, Lectin (Human L-14-Ii) Complexed With Lactose
P08991 / 1.637 / Histone H2A variant
XP015921 / 1.633 / Putative chemokine receptor; GTP-binding protein [Homo sapiens]
NP033966 / 1.628 / Chaperonin subunit 3 (gamma) [Mus musculus]
P00718 / 1.625 / Lysozyme G (1,4-BETA-N-ACETYLMURAMIDASE)
AAH00653 / 1.621 / Aspartyl aminopeptidase [Homo sapiens]
NP071720 / 1.620 / Cathepsin Z preproprotein; cathepsin Z precursor; cathepsin X [Mus musculus]
BAB22551 / 1.615 / DUTPASE~putative [Mus musculus]
P26779 / 1.609 / Proactivator polypeptide precursor
NP008448 / 1.604 / Cytochrome c oxidase subunit II [Salmo salar]
AAF19631 / 1.603 / Cysteine proteinase precursor [Myxine glutinosa]
BG934137 / 1.602 / Salmo salar cDNA clone SK1-0428 similar to Ancient ubiquitious protein, mRNA sequence
X97286 / 1.596 / S.salar genes encoding alpha-globin and beta-globin, clone 3
NP571591 / 1.584 / Parvalbumin [Danio rerio]
BAB32661 / 1.575 / 60S ribosomal protein L35 [Sus scrofa]
NP057123 / 1.573 / CGI-99 protein [Homo sapiens]
XP002241 / 1.562 / Hypothetical protein XP002241 [Homo sapiens]
NP060938 / 1.558 / Uncharacterized hematopoietic stem/progenitor cells protein MDS0 [Homo sapiens]
S39494 / 1.552 / Glutathione reductase (NADPH) (EC 1.6.4.2) - mouse (fragment)
AF256877 / 1.550 / Salmo salar clone BHMS134 microsatellite sequence
BG934793 / 1.548 / Salmo salar cDNA clone SL1-0061 similar to Ribosomal protein L37A, mRNA sequence
Y08369 / 1.536 / Oncorhynchus mykiss mRNA for Id2 protein
BAA13534 / 1.535 / Alpha-globin IV [Oncorhynchus mykiss]
XP088553 / 1.530 / Similar to selenoprotein T (H. sapiens) [Homo sapiens]
AF256892 / 1.529 / Salmo salar clone BHMS195 microsatellite sequence
AAL83294 / 1.528 / Dimerization cofactor of Hnf1/pterin-4a-carbinolamine dehydratase [Danio rerio]
NP571426 / 1.524 / Ubiquitin-conjugating enzyme E2I; ubiquitin-conjugating enzyme 9 [Danio rerio]
AAB53643 / 1.521 / fatty acid binding protein H-FABP [Oncorhynchus mykiss]
BG935605 / 1.517 / Salmo salar cDNA clone SL1-0968 similar to Fibrinogen beta, mRNA sequence
BG935219 / 1.517 / Salmo salar cDNA clone SL1-0530 similar to MHCI 3' UTR, mRNA sequence
NP056155 / 1.512 / Leucine-tRNA ligase precursor; leucine translase [Homo sapiens]
BAB62189 / 1.507 / Glyceraldehyde 3-phosphate dehydrogenase [Oncorhynchus mykiss]
AAA91090 / 1.500 / Calcium binding protein [Meleagris gallopavo]
BG934586 / 1.494 / Salmo salar cDNA clone SK1-0898 similar to Ganglioside expression factor 2
BAA13147 / 1.490 / Ferritin H-2 [Oncorhynchus mykiss]
AAH23662 / 1.480 / Similar to U3 snoRNP-associated 55-kDa protein [Homo sapiens]
AAH15123 / 1.474 / Similar to retinoblastoma-binding protein 4 [Homo sapiens]
BE518516 / 1.469 / Salmo salar cDNA clone similar to Cys protease inhibitor, mRNA sequence
Q90660 / 1.454 / Inhibitor of apoptosis protein (IAP) (Inhibitor of T cellapoptosis protein)
AAF65506 / 1.453 / HDCMD47P [Homo sapiens]
AAG43439 / 1.452 / Low molecular mass protein 7 [Salmo salar]
BG936201 / 1.451 / Salmo salar cDNA clone SS1-0555, mRNA sequence
AAB05218 / 1.448 / Beta-1,4-galactosyltransferase [Gallus gallus]
BAB64474 / 1.444 / Hypothetical protein [Macaca fascicularis]
U11503 / 1.442 / Salmo salar putative minisatellite sequence
CAA10040 / 1.439 / Ran protein [Salmo salar]
BE644466 / 1.426 / Salvelinus alpinus cDNA clone C201 similar to Calcium Transporting ATPase
P06761 / 1.425 / 78 KD Glucose-regulatingproteinprecusor (GRP 78) (Igheavy chain binding protein)
AJ251648 / 1.420 / Oncorhynchus mykiss IGL2C31-2 gene for immunoglobulin light chain
O42265 / 1.419 / Proteasome subunit alpha type 1
BG935089 / 1.411 / Salmo salar cDNA clone SL1-0398 similar to IgM 5' UTR
NP004588 / 1.409 / Small nuclear ribonucleoprotein D2 polypeptide (16.5kD) [Homo sapiens]
AAF61383 / 1.393 / ATPase subunit 6 [Salmo salar]
BG934273 / 1.387 / Salmo salar cDNA clone SK1-0569 similar to U2 snRNA
P55268 / 1.384 / Lamininbeta-2 chain precursor
XM031276 / 1.381 / Homo sapiens nuclear RNA helicase, DECD variant of DEAD box family
NP296369 / 1.381 / Par-3 (partitioning defective 3) homolog C. elegans [Mus musculus]
AAH03870 / 1.373 / Poly A binding protein, cytoplasmic 1 [Mus musculus]
NP004928 / 1.371 / Cystinosis, nephropathic; Cystinosis [Homo sapiens]
CAB64714 / 1.369 / Antithrombin [Salmo salar]
1BCCH / 1.363 / Chain H, Cytochrome Bc1 Complex From Chicken
P29269 / 1.361 / Myosin regulatory light chain 2, smooth muscle isoform
AAL82191 / 1.351 / Partner for ARF 1 [Mus musculus]
AJ004821 / 1.343 / Oncorhynchus mykiss gene encoding interleukin-1 beta
XP126648 / 1.340 / Similar to ATP-binding cassette, sub-family C (CFTR/MRP) [Rattus norvegicus]
BG934909 / 1.332 / Salmo salar cDNA clone SL1-0178 similar to other reported ESTs
CAC34383 / 1.321 / Bifunctional protein [Platichthys flesus]
NP034994 / 1.273 / Myosin Va; flailer; dilute lethal-20J protein [Mus musculus]
P35604 / 1.195 / Coatomerzetasubunit (ZETA-COP)
NP009005 / 0.772 / Cronin, actin binding protein, 1A [Homo sapiens]
AY071854 / 0.768 / Oncorhynchus mykiss clone GC71 MHC class I antigen
BE644490 / 0.761 / Salvelinus alpinus cDNA clone C217 similar to Hydroxyprostaglandin dehydrogenase
AAK07737 / 0.748 / Glycerol-3-phosphate dehydrogenase [Salmo salar]
AB006153 / 0.739 / Oncorhynchus mykiss mRNA for tFZR1
AAK54061 / 0.737 / ETS variant gene 6 protein [Takifugu rubripes]
BAB19129 / 0.732 / Cold-inducible RNA binding protein 2 [Xenopus laevis]
NP571648 / 0.723 / Death associated protein 1b [Danio rerio]
P42931 / 0.720 / Heat shockprotein 30(HSP 30)
CAD10080 / 0.720 / Novel protein similar to polyglutamine binding protein 1 (PQBP1) [Danio rerio]
NP006034 / 0.712 / Heparan sulfate D-glucosaminyl 3-O-sulfotransferase 2 [Homo sapiens]
AAH10236 / 0.705 / Similar to tetratricopeptide repeat domain 1 [Mus musculus]
NP032137 / 0.702 / Guanosine diphosphate (GDP) dissociation inhibitor 2 [Mus musculus]
NP061289 / 0.702 / Brain protein 44-like protein [Mus musculus]
NP075671 / 0.700 / Chymotrypsin-like; chymotrypsin A [Mus musculus]
NP002785 / 0.698 / Proteasome subunit, beta type, 2 [Homo sapiens]
NP032593 / 0.691 / Mini-chromosome maintenance deficient 6 (S. cerevisiae) [Mus musculus]
NP035845 / 0.689 / WD40 repeat protein 1 [Mus musculus]
NP032592 / 0.685 / Mini-chromosome maintenance deficient 5 (S. cerevisiae) [Mus musculus]
CAC28137 / 0.683 / ADP-ATP translocase [Platichthys flesus]
BG935485 / 0.681 / Salmo salar cDNA clone SL1-0842 similar to Cytochrome P450
P40826 / 0.680 / GuaninetRNA-Ribosyltransferase; tRNA-Guanine transglycosylase
I51064 / 0.680 / Somatostatin II precursor - rainbow trout
NP071933 / 0.680 / MGC15201 protein [Homo sapiens]
AAA49602 / 0.679 / MHC class I
AAA82596 / 0.678 / Immunoglobulin light chain F class [Ictalurus punctatus]
AAM34645 / 0.678 / Histone deaceytlase 1 [Danio rerio]
NP001173 / 0.677 / Antiquitin 1; aldehyde dehydrogenase 7A1 [Homo sapiens]
NP002780 / 0.676 / Proteasome (prosome, macropain) subunit, alpha type, 4 [Homo sapiens]
NP031503 / 0.676 / ADP-ribosylation factor 2 [Mus musculus]
AAG48365 / 0.676 / Ubiquitin-conjugating enzyme 9-2 [Danio rerio]
S63594 / 0.675 / Acyl-coenzyme A-binding protein - mallard
AAD43226 / 0.675 / NADH dehydrogenase subunit 1 [Salmo salar]
XP015462 / 0.673 / Hypothetical protein XP015462 [Homo sapiens]
AY071854 / 0.673 / Oncorhynchus mykiss MHC class I antigen
TVTRMC / 0.669 / Transforming protein myc - rainbow trout
K02614 / 0.667 / Chum salmon (O.keta) proopiomelanocortin (POMC) mRNA
AJ427629 / 0.665 / Salmo salar 18S rRNA gene
P51869 / 0.661 / Cytochrome P450 4F4
NP061365 / 0.657 / SET domain, bifurcated 1 [Mus musculus]
AAB40067 / 0.657 / Ependymin [Rhamphichthys sp.]
P50170 / 0.656 / Retinol Dehydrogenasetype II (RODH II)
NP075214 / 0.653 / Protein tyrosine phosphatase, receptor type, Q [Rattus norvegicus]
BAA07894 / 0.653 / KIAA0098 protein [Homo sapiens]
NP055701 / 0.652 / Hypothetical protein; TGF beta inducible nuclear protein 1 [Homo sapiens]
AAH21294 / 0.651 / Calcium homeostasis endoplasmic reticulum protein [Homo sapiens]
AAL40969 / 0.651 / Gamma-N-crystallin [Mus musculus]
AAF21942 / 0.647 / Tissue inhibitor of metalloproteinase 2 precursor [Canis familiaris]
XP010474 / 0.643 / Eukaryotic translation initiation factor 1A, Y chromosome [Homo sapiens]
BG935839 / 0.643 / Salmo salar cDNA clone SS1-0155 similar to Collagen, type I
NP001489 / 0.643 / Glutamate-cysteine ligase (gamma-glutamylcysteine synthetase) [Homo sapiens]
AAB37252 / 0.642 / Cathepsin L
AJ272373 / 0.640 / Oncorhynchus mykiss mRNA for simple type II keratin K8a (S1)
NP056108 / 0.640 / Nesprin-1 beta [Homo sapiens]
AAD43226 / 0.637 / NADH dehydrogenase subunit 1 [Salmo salar]
AAF81098 / 0.635 / Prostaglandin dehydrogenase [Papio hamadryas]
NP075388 / 0.634 / Similar to splicing factor, arginine/serine-rich 4 [Homo sapiens]
NP571499 / 0.629 / Swelling dependent chloride channel [Danio rerio]
Q9D883 / 0.626 / Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor 35 kDa subunit)
S29980 / 0.625 / Class II histocompatibility antigen - Atlantic salmon
AAA21440 / 0.623 / Nicotinamide nucleotide transhydrogenase [Bos taurus]
A55237 / 0.622 / Transcription factor E2F-4 - human
BAA83019 / 0.622 / KIAA1067 protein [Homo sapiens]
XP009187 / 0.622 / Muscle-specific beta 1 integrin binding protein [Homo sapiens]
AAF71271 / 0.621 / Myosin light chain 2 [Oncorhynchus kisutch]
XP011304 / 0.621 / Transcription factor CA150 [Homo sapiens]
AAF31644 / 0.617 / Putative chitinase precursor [Mus musculus]
Q28999 / 0.616 / Diamineacetyltransferase (spermidine/spermidine N1-acetyltransferase)
Q02293 / 0.614 / CAAX farnesyltransferase beta subunit (RAS proteins prenyltransferase beta)
XP008932 / 0.613 / Cofactor required for Sp1 transcriptional activation, subunit 7 (70kD) [Homo sapiens]
O35601 / 0.608 / FYN-T-binding protein (SLP-76 associated phosphoprotein) (SLAP-130)
NP033966 / 0.603 / Chaperonin subunit 3 (gamma) [Mus musculus]
NP033438 / 0.602 / Tumor protein D52 [Mus musculus]
AAH26372 / 0.602 / Hypothetical protein MGC10924 similar to Nedd4 WW-binding protein 5 [Mus musculus]
NP034963 / 0.597 / Moesin [Mus musculus]
AF203473 / 0.596 / Salvelinus fontinalis progastricsin
1909362A / 0.596 / Ribosomal protein L27 [Pisum sativum]
NP036943 / 0.595 / O-acetyltransferase milk fat glolbule membrane protein [Rattus norvegicus]
NP006430 / 0.594 / Mab-21-like protein 2; mab-21-like 2 [Homo sapiens]
Q9YHZ6 / 0.593 / CDC45-related protein
Q9YI98 / 0.589 / Ornithine decarboxylase antizyme, short isoform (ODC-Az-S)
XP016586 / 0.589 / Hypothetical protein FLJ11806 [Homo sapiens]
NP571499 / 0.586 / Swelling dependent chloride channel [Danio rerio]
AAL40376 / 0.586 / High choriolytic enzyme 1 precursor [Takifugu rubripes]
P38528 / 0.586 / Ependymin precusor (EPD)
BG936146 / 0.582 / Salmo salar cDNA clone SS1-0494 similar to Cathepsin B
AAK98517 / 0.582 / Coronin relative protein [Rattus norvegicus]
AF273012 / 0.578 / Salmo salar clone 10-03L immunoglobulin light chain precursor (IgL) mRNA
A54143 / 0.578 / Kappa-B motif-binding phosphoprotein [Mus musculus]
NP001680 / 0.578 / ATP synthase, mitochondrial, C subunit-3 [Homo sapiens]
AAF82126 / 0.576 / Vitamin K-dependent gamma-glutamyl carboxylase [Opsanus tau]
Q9GLE3 / 0.576 / Cathepsin K precursor
P49947 / 0.574 / Ferritin, middle subunit
BG936460 / 0.572 / Salmo salar cDNA clone SS1-0835 similar to Ornithine decarboxylase antizyme
AB079598 / 0.568 / Salmo salar DJ-1
NP035320 / 0.565 / Proteasome (prosome, macropain) 28 subunit, beta; [Mus musculus]
NP571908 / 0.562 / ubiquitin-conjugating enzyme E2I2 [Danio rerio]
AY071855 / 0.559 / Oncorhynchus mykiss MHC class I antigen, proteosome subunitLMP7/PSMB8
AAD43526 / 0.558 / Immunoglobulin heavy chain [Salmo salar]
CAB51168 / 0.558 / Dyskerin [Homo sapiens]
XP012178 / 0.556 / Hypothetical protein XP012178 [Homo sapiens]
BAB26181 / 0.556 / Phosphoribosyl pyrophosphate synthetase 1~putative [Mus musculus]
XP048384 / 0.554 / Hypothetical protein XP048384 [Homo sapiens]
BG934641 / 0.553 / Salmo salar cDNA clone SK1-0958 similar to Src-like adapter protein
NP005733 / 0.553 / Disulfide isomerase-related protein [Homo sapiens]
NP055277 / 0.546 / Lsm1 protein [Homo sapiens]
P80229 / 0.539 / Leukocyte elastase inhibitor (LEI); (Leucocyte neutral proteinase inhibitor) (LNPI)
NP080899 / 0.538 / Cleavage and polyadenylation specific factor 5, 25 kD subunit [Mus musculus]
JC5576 / 0.538 / Inter-alpha-trypsin inhibitor heavy chain 3 - golden hamster
CAA68506 / 0.537 / 5-aminolevulinate synthase precursor [Homo sapiens]
NP006421 / 0.531 / Chaperonin containing t-complex polypeptide 1, delta subunit [Homo sapiens]
BAB22488 / 0.530 / Putative~ribosomal protein L12 [Mus musculus]
BAB68518 / 0.529 / Hatching enzyme EHE13 [Anguilla japonica]
CAA48925 / 0.528 / Ribosomal protein L31 [Homo sapiens]
P56384 / 0.526 / ATP synthase lipid-binding protein, mitochondrial precursor (ATP synthase proteolipid P3)
AAN10161 / 0.524 / IHABP [Takifugu rubripes]
CAA68857 / 0.517 / HES1 [Homo sapiens]
BAB83847 / 0.512 / MECL1 [Oryzias latipes]
BAA83487 / 0.511 / Dimeric dihydrodiol dehydrogenase [Canis familiaris]
P18753 / 0.511 / Oocyte zinc finger protein XLCOF8.4
BAB40847 / 0.509 / Mitochondrial ribosomal protein L16 (L16mt) [Homo sapiens]
BAB62189 / 0.505 / Glyceraldehyde 3-phosphate dehydrogenase [Oncorhynchus mykiss]
BE644489 / 0.501 / Salvelinus alpinus cDNA clone C311 similar to Homeobox HOX-B4
AAK95183 / 0.499 / 40S ribosomal protein S2 [Ictalurus punctatus]
BG936553 / 0.492 / Salmo salar cDNA clone SS1-0932 similar to Superoxide dismutase [Cu-Zn]
S58681 / 0.490 / Selenocysteine tRNA activating factor - African clawed frog
BAA33400 / 0.488 / Chromobox protein (CHCB1) [Gallus gallus]
NP006629 / 0.486 / Ribonuclease P, 40kD subunit [Homo sapiens]
BG934204 / 0.485 / Salmo salar cDNA clone SK1-0497 similar to GnRH 5' UTR
AAH13740 / 0.483 / Solute carrier family 2 (facilitated glucose transporter) [Homo sapiens]
BAB32661 / 0.482 / 60S ribosomal protein L35 [Sus scrofa]
AAF04305 / 0.482 / Precerebellin-like protein [Oncorhynchus mykiss]
NP002481 / 0.482 / NADH dehydrogenase (ubiquinone) 1 alpha subcomplex [Homo sapiens]
S66520 / 0.479 / Tropomyosin, fast muscle - Atlantic salmon
XP004034 / 0.474 / Putative capacitative calcium channel [Homo sapiens]
AAB63598 / 0.468 / Ovulatory protein-2 precursor [Salvelinus fontinalis]
NP001880 / 0.466 / Crystallin, zeta; quinone oxidoreductase; NADPH:quinone reductase [Homo sapiens]
NP075801 / 0.456 / Genes associated with retinoid-IFN-induced mortality [Mus musculus]
NP006016 / 0.453 / Protease, serine, 22; placental protein 11 (serine proteinase) [Homo sapiens]
BAA23005 / 0.444 / PAX7 protein [Gallus gallus]
XP028598 / 0.414 / Prefoldin 5 [Homo sapiens]
1BE4A / 0.413 / Chain A, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina
T50824 / 0.399 / Ribosomal protein S26 [Homo sapiens]
NP005585 / 0.390 / Nascent-polypeptide-associated complex alpha polypeptide [Homo sapiens]
NP035343 / 0.383 / Protein tyrosine phosphatase, receptor-type, F [Mus musculus]
AAA58771 / 0.375 / HMG-1
BAB23473 / 0.368 / Phosphatase 1, catalytic subunit, beta isoform~putative [Mus musculus]
1