Genomequest Sequence Search Report

Genomequest Sequence Search Report

Annex 2

Al Rwahnih M, Daubert S, Úrbez-Torres JR, Cordero F, Rowhani A

Deep sequencing evidence from single grapevine plants reveals a virome dominated by mycoviruses.

Archives of Virology

Department of Plant Pathology, University of California, Davis, California

1 Shields Avenue, Davis, CA 95616

Subject Database / The subject database is composed of 105735964 nucleotide sequences.
Database / Version / Release Date / Database Status
Genbank - Bacterial division / 178 / Jul 8, 2010 / Most Recent
Genbank - Environmental Samples / 178 / Jul 8, 2010 / Most Recent
Genbank - Expressed Sequence Tags division / 178 / Jul 8, 2010 / Most Recent
Genbank - Genome Survey Sequences division / 178 / Jul 5, 2010 / Most Recent
Genbank - High-throughput cDNA division / 178 / Jul 9, 2010 / Most Recent
Genbank - High-throughput Genomic sequences division / 178 / Jul 9, 2010 / Most Recent
Genbank - Invertebrate division / 178 / Jul 8, 2010 / Most Recent
Genbank - Other Mammalian division / 178 / Jul 9, 2010 / Most Recent
Genbank - Bacteriophage division / 178 / Jul 9, 2010 / Most Recent
Genbank - Plant / fungal / algal division / 178 / Jul 8, 2010 / Most Recent
Genbank - Primate division / 178 / Jul 9, 2010 / Most Recent
Genbank - Rodent division / 178 / Jul 8, 2010 / Most Recent
GB SET / 178 / Jul 9, 2010 / Most Recent
Genbank - Sequence Tagged Sites division / 178 / Jul 9, 2010 / Most Recent
Genbank - Synthetic division / 178 / Jul 8, 2010 / Most Recent
Genbank - Unannotated division / 178 / Jul 9, 2010 / Most Recent
Genbank - Viral division / 178 / Jul 8, 2010 / Most Recent
Genbank - Other Vertebrate division / 178 / Jul 9, 2010 / Most Recent
Search Strategy / The search strategy was Blast with scoring matrix NUC.3.1, an expect cutoff of 10 and word size 11.
Keep the best alignments / For each query, the 1 best alignments were kept. In this case "best alignment" means the alignment with the highest score.

Alignments Grouped by Organism [top]

Organism #1: Botryotinia fuckeliana
  • Organism #1 / Result 1 next | overview
[Q] contig00151 vs [S] AM491608
Query view (% Id) / 65.8
Subj. % Id / 2.89
Align % Id / 81.28
E-val / 1.41e-15
Query Identifier / contig00151
Identifier / AM491608
Total View
Description / Botryotinia fuckeliana totivirus 1, complete genome, genomic RNA.
Gene name / CP, RdRp
  • See all subjects mapped to this query
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A part of your query matches a part of this sequence.

Align len= 187 nt, Score= 47, Eval= 1.40e-15, Identity= 81.28%, Similarity= 81.28%

Query len= 231 nt, pos= 37-223 nt (fw), Identity query= 65.8%, Alignment coverage query= 80.95%, Nb gaps query= 0

Subject len= 5261 nt, pos= 4903-5089 nt (fw), Identity subject= 2.89%, Alignment coverage subject= 3.55%, Nb gaps subject= 0

Q: 37 GAGGTATTCTAGAGAGCTACCCCCTCATACGGTTACTCGAAAACCGTTTGAGTGATGAAG 96

||||||||||||| ||||| || || || ||||||||||| |||||| |||| || ||||

S: 4903 GAGGTATTCTAGAAAGCTATCCACTTATTCGGTTACTCGAGAACCGTCTGAGCGACGAAG 4962

Q: 97 ACTTGAAGGAGCTTGCCCTTCTTTGTGGAGTGTCATGCTCCACTAAAGAAGCCCGAGTGA 156

|| | ||| || || ||||| |||||| |||||||||||||||||||| ||||

S: 4963 ACCTTCGGGAACTCGCACTTCTCCTTGGAGTATCATGCTCCACTAAAGAAGCGAGAGTCT 5022

Q: 157 TCTGTTTTGGGCCTGAATCACTTTCCCATAACATCATTGGATATTTACCATATAGTGATG 216

||| |||||| |||| |||||| | ||||||||||| || ||| |||| || |||||||

S: 5023 GCTGCTTTGGGTCTGAGTCACTTACTCATAACATCATAGGGTATCTACCCTACAGTGATG 5082

Q: 217 CTGCGTC 223

|||||||

S: 5083 CTGCGTC 5089

  • Organism #1 / Result 2 next | previous | overview
[Q] contig00449 vs [S] AM491608
Query view (% Id) / 45.29
Subj. % Id / 5.30
Align % Id / 79.94
E-val / 2.98e-28
Query Identifier / contig00449
Identifier / AM491608
Total View
Description / Botryotinia fuckeliana totivirus 1, complete genome, genomic RNA.
Gene name / CP, RdRp
  • See all subjects mapped to this query
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A part of your query matches a part of this sequence.

Align len= 349 nt, Score= 69, Eval= 3.00e-28, Identity= 79.94%, Similarity= 79.94%

Query len= 616 nt, pos= 8-356 nt (rv), Identity query= 45.29%, Alignment coverage query= 56.66%, Nb gaps query= 0

Subject len= 5261 nt, pos= 4063-4411 nt (fw), Identity subject= 5.3%, Alignment coverage subject= 6.63%, Nb gaps subject= 0

Q: 8 TAGGCACACTAGCCAGCGGACACAGAGGGACATCATTCATTAATTCTCTCTGTAATGCCG 67

||||||| || || ||||| ||||||||||||||||||||||| || ||| || || |

S: 4063 TAGGCACGCTGGCAAGCGGGCACAGAGGGACATCATTCATTAACTCCCTCCTGAACGCAG 4122

Q: 68 CGTACATTCGTTGCGCTCTCGGAGCTGCTAGATTCGACTCGATGTTGAGTCTGCACGCTG 127

| |||||||| || ||||| || ||||| | |||||| | ||| |||| ||||||| |

S: 4123 CTTACATTCGGTGTGCTCTTGGGGCTGCAAAGTTCGACACTATGCTGAGCTTGCACGCGG 4182

Q: 128 GTGATGACGTGTATATTAGGGCTAACACTCTTAGTGACGCCGCTGATATACTCAGGAAAT 187

| || ||||| ||||| | || ||||| || ||||| || || ||||| || | |||||

S: 4183 GGGACGACGTATATATCCGCGCCAACACGCTGAGTGAAGCGGCGGATATCCTGAAGAAAT 4242

Q: 188 GTAAGGAGTTTGGCTGTAGGATGAACCCGACGAAACAAAGCATCGGATTCAAGAATGCCG 247

||||| |||||| ||||||||||| || ||||| || || || ||||||| |||||| |

S: 4243 GTAAGATGTTTGGATGTAGGATGAATCCCACGAAGCAGAGTATTGGATTCAGGAATGCAG 4302

Q: 248 AGTTTTTGCGACTCGGAATAAACTCTCGTTACGCTATCGGGTATGTGGCAAGGACCATAT 307

| || || | | ||||| |||||||||||||| | ||||||||||| || |||||||

S: 4303 AATTCTTAAGGTTAGGAATTAACTCTCGTTACGCCGTAGGGTATGTGGCCAGAACCATAT 4362

Q: 308 CTACACTGGTAGCAGGCAATTGGTCTAACCTAGACCCTATGGAACCCCT 356

| || || || ||||| |||||||||||||||||||| |||||||||||

S: 4363 CGACCCTAGTGGCAGGAAATTGGTCTAACCTAGACCCCATGGAACCCCT 4411

  • Organism #1 / Result 3 next | previous | overview
[Q] contig00462 vs [S] AM491608
Query view (% Id) / 39.97
Subj. % Id / 6.06
Align % Id / 78.19
E-val / 5.44e-18
Query Identifier / contig00462
Identifier / AM491608
Total View
Description / Botryotinia fuckeliana totivirus 1, complete genome, genomic RNA.
Gene name / CP, RdRp
  • See all subjects mapped to this query
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A part of your query matches a part of this sequence.

Align len= 408 nt, Score= 52, Eval= 5.40e-18, Identity= 78.19%, Similarity= 78.19%

Query len= 798 nt, pos= 46-453 nt (rv), Identity query= 39.97%, Alignment coverage query= 51.13%, Nb gaps query= 0

Subject len= 5261 nt, pos= 1528-1935 nt (fw), Identity subject= 6.06%, Alignment coverage subject= 7.76%, Nb gaps subject= 0

Q: 46 ACTGCTCTGGATGTCGACAACCGGCACCTCCGACACGCATCGGTGTCACCGTGGTTCTGG 105

||||| ||||| || |||||||||||||| ||||| || ||||| || |||||||||

S: 1528 ACTGCGCTGGACGTGGACAACCGGCACCTTAAGCACGCGTCAGTGTCTCCTTGGTTCTGG 1587

Q: 106 ATAGAACCGACAAGTATCTTACCGCCGAACCTACTCGGTTCAGAGGCTGAGATCGAAGGT 165

| |||||||| || ||| |||| || |||||||| || || || |||||| | || ||

S: 1588 GTGGAACCGACCAGCATCCTACCCCCCAACCTACTTGGGTCGGAAGCTGAGCTAGAGGGG 1647

Q: 166 TGCGCCTCCTTGGCGTATAAAGATACTGTCGTGTCCAAACCCGCGTGGGATACGATAACT 225

|| || || |||| | |||||||| || || || ||||| || ||||| || || ||

S: 1648 TGTGCATCACTGGCACACAAAGATACGGTGGTCTCAAAACCAGCCTGGGACACCATTACC 1707

Q: 226 AGGGTGGGCTCAAGTGACGTGTCTTTTTCTGCGTATCGTGCTCGTTTTAAATTCGCACGA 285

|||||||| || || |||||||| ||||| |||||||| || || || || || || ||

S: 1708 AGGGTGGGTTCGAGCGACGTGTCCTTTTCCGCGTATCGCGCGCGATTCAAGTTTGCCCGC 1767

Q: 286 CAAACGTGGTTTTTCAACCACTGGCTTAACCACCCCATGAATGGCCTCGGGGCTATGAAG 345

||||| ||||| || ||||| ||||| |||||||| ||||| || ||||| |||||||||

S: 1768 CAAACTTGGTTCTTTAACCATTGGCTCAACCACCCAATGAACGGGCTCGGTGCTATGAAG 1827

Q: 346 GTCAGACAACTCGATCCCAATGGTATCATACACCCTGGGCCCTGTGCCGCACATCCTCAA 405

|| |||| || || || ||||||||||| || || ||||||||| | || || || ||

S: 1828 GTACGACAGCTTGACCCAAATGGTATCATCCATCCGGGGCCCTGTACGGCCCACCCGCAG 1887

Q: 406 GTGCGAGACCGTGTCGAAGCTGACCTTCCGTTCACGGATTACCTCTGG 453

||| ||||||| ||||| || ||||| || || || || |||||||||

S: 1888 GTGAGAGACCGGGTCGAGGCGGACCTACCTTTTACTGACTACCTCTGG 1935

  • Organism #1 / Result 4 next | previous | overview
[Q] contig00250 vs [S] AM491608
Query view (% Id) / 38.96
Subj. % Id / 5.00
Align % Id / 79.22
E-val / 1.88e-20
Query Identifier / contig00250
Identifier / AM491608
Total View
Description / Botryotinia fuckeliana totivirus 1, complete genome, genomic RNA.
Gene name / CP, RdRp
  • See all subjects mapped to this query
  • See all queries mapped to this subject , [interactive view]

A part of your query matches a part of this sequence.

Align len= 332 nt, Score= 56, Eval= 1.90e-20, Identity= 79.22%, Similarity= 79.22%

Query len= 675 nt, pos= 327-658 nt (rv), Identity query= 38.96%, Alignment coverage query= 49.19%, Nb gaps query= 0

Subject len= 5261 nt, pos= 3624-3955 nt (fw), Identity subject= 5%, Alignment coverage subject= 6.31%, Nb gaps subject= 0

Q: 327 TACAGACGGATGGCTGCCGAGGAGGTCCACATCAACCCCGTACCCTCATGGGACGGTACC 386

|||||||| |||||||| |||||||| |||| |||||| ||||| |||||||| ||

S: 3624 TACAGACGCATGGCTGCAGAGGAGGTACACAGCAACCCAGTACCAGACTGGGACGGCACA 3683

Q: 387 ACTTCTGTCTCGGCAAGCATCAAACTAGAAGCAGGCAAAGATCGAGCTATCTTCGCCTGT 446

||||| || || || || ||||| || || ||||| || ||||| || |||||||| ||

S: 3684 ACTTCGGTATCAGCGAGTATCAAGCTCGAGGCAGGTAAGGATCGCGCAATCTTCGCTTGC 3743

Q: 447 GATACTAGGTCTTACTTCGCTTTTTCCTGGATACTCAATGACGTCCAAAAGAGGTGGAGG 506

|| || | ||||||||||| || || ||||||||||||||||| ||||||| ||||| |

S: 3744 GACACCCGTTCTTACTTCGCGTTCTCGTGGATACTCAATGACGTGCAAAAGAAGTGGAAG 3803

Q: 507 GGTGAGCGTATACTGCTGGATCCGGGGAAGGGTGGTTTGTACGGTATCTCGCGTAGGATA 566

|| ||| | || | ||||||| ||||| || || ||||||||||||| || | ||

S: 3804 GGGGAGAGGATCCCTTTGGATCCAGGGAAAGGCGGACTGTACGGTATCTCACGCCGAATC 3863

Q: 567 CGCAACTGTCAGAAGGGCGGTGGCGTCAACCTAATGCTCGACTACGACAATTTCAACTCT 626

|| ||| |||||| || ||||| ||||| | ||||| ||||||||||| || |||||

S: 3864 CGTAACAGTCAGAGAGGAGGTGGAGTCAATTTGATGCTTGACTACGACAACTTTAACTCG 3923

Q: 627 CATCACTCTAACTCTGTCCAGAGTATGATCTT 658

|||||||| ||| |||||||||||||||||

S: 3924 CATCACTCCAACAGCGTCCAGAGTATGATCTT 3955

  • Organism #1 / Result 5 next | previous | overview
[Q] contig00473 vs [S] AM491608
Query view (% Id) / 31.73
Subj. % Id / 2.76
Align % Id / 79.67
E-val / 1.68e-7
Query Identifier / contig00473
Identifier / AM491608
Total View
Description / Botryotinia fuckeliana totivirus 1, complete genome, genomic RNA.
Gene name / CP, RdRp
  • See all subjects mapped to this query
  • See all queries mapped to this subject , [interactive view]

A part of your query matches a part of this sequence.

Align len= 182 nt, Score= 34, Eval= 1.70e-7, Identity= 79.67%, Similarity= 79.67%

Query len= 457 nt, pos= 2-183 nt (rv), Identity query= 31.73%, Alignment coverage query= 39.82%, Nb gaps query= 0

Subject len= 5261 nt, pos= 1690-1871 nt (fw), Identity subject= 2.76%, Alignment coverage subject= 3.46%, Nb gaps subject= 0

Q: 2 GCCTGGGATACTATAACTAGGGTCGGGTCCAGCGACGTTTCTTTCTCTGCGTACCGTGCG 61

|||||||| || || || ||||| || || |||||||| || || || ||||| || |||

S: 1690 GCCTGGGACACCATTACCAGGGTGGGTTCGAGCGACGTGTCCTTTTCCGCGTATCGCGCG 1749

Q: 62 CGTTTCAAGTTCGCGAGGCAGACTTGGTTCTTCAATCATTGGTTGAACCACCCGATGAAC 121

|| |||||||| || | || ||||||||||| || |||||| | |||||||| ||||||

S: 1750 CGATTCAAGTTTGCCCGCCAAACTTGGTTCTTTAACCATTGGCTCAACCACCCAATGAAC 1809

Q: 122 GGTTTAGGTGCGATGAAGGTGCGGCAGCTCGATCCGAACGGCATCATACACCCGGGGCCC 181

|| | ||||| |||||||| || ||||| || || || || ||||| || |||||||||

S: 1810 GGGCTCGGTGCTATGAAGGTACGACAGCTTGACCCAAATGGTATCATCCATCCGGGGCCC 1869

Q: 182 TG 183

||

S: 1870 TG 1871

  • Organism #1 / Result 6 next | previous | overview
[Q] contig00271 vs [S] AM491608
Query view (% Id) / 30.25
Subj. % Id / 1.62
Align % Id / 81.73
E-val / 3.82e-4
Query Identifier / contig00271
Identifier / AM491608
Total View
Description / Botryotinia fuckeliana totivirus 1, complete genome, genomic RNA.
Gene name / CP, RdRp
  • See all subjects mapped to this query
  • See all queries mapped to this subject , [interactive view]

A part of your query matches a part of this sequence.

Align len= 104 nt, Score= 28, Eval= 3.80e-4, Identity= 81.73%, Similarity= 81.73%

Query len= 281 nt, pos= 166-269 nt (fw), Identity query= 30.25%, Alignment coverage query= 37.01%, Nb gaps query= 0

Subject len= 5261 nt, pos= 3624-3727 nt (fw), Identity subject= 1.62%, Alignment coverage subject= 1.98%, Nb gaps subject= 0

Q: 166 TACAGACGGATGGCTGCCGAGGAGGTCCATGTCAACCCTGTTCCATCATGGGATGGTACA 225

|||||||| |||||||| |||||||| || |||||| || ||| ||||| || |||

S: 3624 TACAGACGCATGGCTGCAGAGGAGGTACACAGCAACCCAGTACCAGACTGGGACGGCACA 3683

Q: 226 ACCTCTGTCTCAGCCAGTGTCAAGCTCGAAGCAGGTAAGGATCG 269

|| || || ||||| ||| |||||||||| ||||||||||||||

S: 3684 ACTTCGGTATCAGCGAGTATCAAGCTCGAGGCAGGTAAGGATCG 3727

  • Organism #1 / Result 7 next | previous | overview
[Q] contig00720 vs [S] AM491608
Query view (% Id) / 29.4
Subj. % Id / 2.51
Align % Id / 83.54
E-val / 1.92e-19
Query Identifier / contig00720
Identifier / AM491608
Total View
Description / Botryotinia fuckeliana totivirus 1, complete genome, genomic RNA.
Gene name / CP, RdRp
  • See all subjects mapped to this query
  • See all queries mapped to this subject , [interactive view]

A part of your query matches a part of this sequence.

Align len= 158 nt, Score= 54, Eval= 1.90e-19, Identity= 83.54%, Similarity= 83.54%

Query len= 449 nt, pos= 291-448 nt (rv), Identity query= 29.4%, Alignment coverage query= 35.19%, Nb gaps query= 0

Subject len= 5261 nt, pos= 4251-4408 nt (fw), Identity subject= 2.51%, Alignment coverage subject= 3%, Nb gaps subject= 0

Q: 291 TTTGGTTGTAGGATGAATCCAACAAAGCAAAGCATCGGATTCAGGAATGCCGAGTTCTTA 350

||||| |||||||||||||| || ||||| || || |||||||||||||| || ||||||

S: 4251 TTTGGATGTAGGATGAATCCCACGAAGCAGAGTATTGGATTCAGGAATGCAGAATTCTTA 4310

Q: 351 CGTCTCGGAATCAACTCTCGTTACGCTATCGGTTATGTCGCCAGGACAATATCCACACTG 410

| | ||||| |||||||||||||| | || ||||| ||||| || ||||| || ||

S: 4311 AGGTTAGGAATTAACTCTCGTTACGCCGTAGGGTATGTGGCCAGAACCATATCGACCCTA 4370

Q: 411 GTAGCAGGCAATTGGTCTAACCTAGACCCAATGGAACC 448

|| ||||| |||||||||||||||||||| ||||||||

S: 4371 GTGGCAGGAAATTGGTCTAACCTAGACCCCATGGAACC 4408

  • Organism #1 / Result 8 next | previous | overview
[Q] contig00626 vs [S] AM491608
Query view (% Id) / 19.48
Subj. % Id / 2.70
Align % Id / 80.68
E-val / 7.18e-11
Query Identifier / contig00626
Identifier / AM491608
Total View
Description / Botryotinia fuckeliana totivirus 1, complete genome, genomic RNA.
Gene name / CP, RdRp
  • See all subjects mapped to this query
  • See all queries mapped to this subject , [interactive view]

A part of your query matches a part of this sequence.

Align len= 176 nt, Score= 40, Eval= 7.20e-11, Identity= 80.68%, Similarity= 80.68%

Query len= 729 nt, pos= 83-258 nt (fw), Identity query= 19.48%, Alignment coverage query= 24.14%, Nb gaps query= 0

Subject len= 5261 nt, pos= 775-950 nt (fw), Identity subject= 2.7%, Alignment coverage subject= 3.35%, Nb gaps subject= 0

Q: 83 GGCACTTACGACGGGCCAGTCAACTCTTTGACTGATGCCGTCTACATACCGAGGTTGGTG 142

||||| || ||||| |||||||| || ||||||| ||||| |||||||| ||| ||||

S: 775 GGCACCTATGACGGCCCAGTCAATTCGCTGACTGACGCCGTGTACATACCAAGGCTGGTA 834

Q: 143 AATACCACCTTGACCGGCGATGTGTTCGCCGTCCTTTGTAACGCCGTGGCTGGTGAGGGA 202

|| ||||||||||| || || || ||||| || | ||||||||||| |||||||||||

S: 835 AACACCACCTTGACAGGTGACGTCTTCGCGGTGTTATGTAACGCCGTTGCTGGTGAGGGC 894

Q: 203 TCACAAGTGGTCTCTGATGTTGTCGAGCTTGATGCGAACACGCGTCAACCTATAAT 258

|| || || || ||||| || || ||||| ||||| ||||| || ||||| |||||

S: 895 TCGCAGGTCGTTTCTGACGTCGTTGAGCTCGATGCCAACACCCGCCAACCCATAAT 950

  • Organism #1 / Result 9 next | previous | overview
[Q] contig00510 vs [S] AM491608
Query view (% Id) / 13.71
Subj. % Id / 1.62
Align % Id / 84.16
E-val / 3.75e-9
Query Identifier / contig00510
Identifier / AM491608
Total View
Description / Botryotinia fuckeliana totivirus 1, complete genome, genomic RNA.
Gene name / CP, RdRp
  • See all subjects mapped to this query
  • See all queries mapped to this subject , [interactive view]

A part of your query matches a part of this sequence.

Align len= 101 nt, Score= 37, Eval= 3.70e-9, Identity= 84.16%, Similarity= 84.16%

Query len= 620 nt, pos= 140-240 nt (rv), Identity query= 13.71%, Alignment coverage query= 16.29%, Nb gaps query= 0

Subject len= 5261 nt, pos= 2970-3070 nt (fw), Identity subject= 1.62%, Alignment coverage subject= 1.92%, Nb gaps subject= 0

Q: 140 AGGAGGGGGTATCACCGGAAGTTGGGTAATGCCATCATTACCAATACCGAGCTAAGGGAC 199

|||||||| || ||||| ||| | ||||| || || |||||||| | ||||| ||||||

S: 2970 AGGAGGGGCTACCACCGAAAGCTAGGTAACGCTATAATTACCAACAAGGAGCTTAGGGAC 3029

Q: 200 TCACTCTTCCCTAAGAAGAAACACAACGCAGCAGGCGTTAA 240

|| |||||||||||||||||||| |||||||| || |||||

S: 3030 TCCCTCTTCCCTAAGAAGAAACATAACGCAGCCGGTGTTAA 3070

Organism #2: Botrytis virus
  • Organism #2 / Result 10 next | previous | overview
[Q] contig00073 vs [S] AF238884
Query view (% Id) / 83.05
Subj. % Id / 3.59
Align % Id / 83.62
E-val / 2.69e-45
Query Identifier / contig00073
Identifier / AF238884
Total View
Description / Botrytis virus F, complete genome.
Gene name / empty
  • See all subjects mapped to this query
  • See all queries mapped to this subject , [interactive view]

A part of your query matches a part of this sequence.

Align len= 293 nt, Score= 97, Eval= 2.70e-45, Identity= 83.62%, Similarity= 83.62%

Query len= 295 nt, pos= 4-295 nt (fw), Identity query= 83.05%, Alignment coverage query= 98.98%, Nb gaps query= 1

Subject len= 6827 nt, pos= 4057-4349 nt (fw), Identity subject= 3.59%, Alignment coverage subject= 4.29%, Nb gaps subject= 0

Q: 4 CATGTCAACCGGTACATCCCTAGCCATCTCCGCAATGTGAACCAAGCCGTCCC-CGCCGC 62

||||||||||||||||| || ||||| || ||||| || |||||||||||||| ||||||

S: 4057 CATGTCAACCGGTACATACCCAGCCACCTTCGCAACGTCAACCAAGCCGTCCCGCGCCGC 4116

Q: 63 AACGCCGCCACCAACCCTGACGCCCTGCCGAGCCAACGCGTACTCCCTGGAGGCCGAGCC 122

||||| |||| |||||||||||| ||||| ||||| ||| |||||||||| |||| | ||

S: 4117 AACGCTGCCAGCAACCCTGACGCTCTGCCAAGCCAGCGCATACTCCCTGGGGGCCAATCC 4176

Q: 123 CCTACAGCTGAACCCTGACAATCACAGACAAGCGCATTGCCCACTGGCGGAAAAGTCATT 182

| || |||||||| |||||||||||| | ||||| |||||||||| ||| | | ||||

S: 4177 ACCACTGCTGAACCATGACAATCACAGGCCAGCGCGCTGCCCACTGGAGGAGAGGCCATT 4236

Q: 183 AACGTCCCGGCCCTTGACCGCCAAGATCCCCAACGCTTCCCACAGCTGAAAGTCTTGCCC 242

||||||| || |||||||| ||||| || |||||||| |||||||| |||||||| ||

S: 4237 GACGTCCCTGCACTTGACCGGCAAGACCCGCAACGCTTTCCACAGCTAAAAGTCTTACCT 4296

Q: 243 CATCTTTGTGGCCACATTGGTGACTACGCAGAGGCTTTTTACCCTGAGCCTGA 295

|||||||| || ||||||| || ||| |||| || | ||||||||| |||||

S: 4297 CATCTTTGCGGTTACATTGGCGATTACTCAGAAGCCTCTTACCCTGAACCTGA 4349

  • Organism #2 / Result 11 next | previous | overview
[Q] contig00085 vs [S] AF238884
Query view (% Id) / 73.47
Subj. % Id / 2.64
Align % Id / 83.72
E-val / 2.95e-32
Query Identifier / contig00085
Identifier / AF238884
Total View
Description / Botrytis virus F, complete genome.
Gene name / empty
  • See all subjects mapped to this query
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A part of your query matches a part of this sequence.

Align len= 215 nt, Score= 75, Eval= 2.90e-32, Identity= 83.72%, Similarity= 83.72%

Query len= 245 nt, pos= 4-218 nt (fw), Identity query= 73.47%, Alignment coverage query= 87.76%, Nb gaps query= 0

Subject len= 6827 nt, pos= 4939-5153 nt (fw), Identity subject= 2.64%, Alignment coverage subject= 3.15%, Nb gaps subject= 0

Q: 4 TGGGGCCCTTACGCTCGATACATTGATCGCCGCATACGAGCACTGCTGCCACCGCACATC 63

||||| |||||||| || |||||||| || |||||||||||||| ||||| || ||| ||

S: 4939 TGGGGACCTTACGCCCGCTACATTGACCGACGCATACGAGCACTTCTGCCGCCACACGTC 4998

Q: 64 TACATCCACAGCCGCAGAACCAATGAAGACTTTGAGCAATTCGTGGCGACTCACTGGGAC 123

||||||||||||||| | ||||||||||| |||||| ||||||| || | ||||||||

S: 4999 TACATCCACAGCCGCCGCACCAATGAAGATTTTGAGAAATTCGTAGCTGCCCACTGGGAT 5058

Q: 124 CACACAAGAGAATCCACGGATGGTGATTACACTGCCTACGACGCATCACAAGACGCCACC 183

|||||| | ||||| || ||||| || |||||||| || ||||| || || || || ||

S: 5059 CACACACGGGAATCGACCGATGGCGACTACACTGCGTATGACGCTTCGCAGGATGCAACT 5118

Q: 184 TTTGTCAACTTTGAAACGCTGCTCATGCGCAGGCT 218

||||||||||||||||| || ||||||||| ||||

S: 5119 TTTGTCAACTTTGAAACCCTCCTCATGCGCCGGCT 5153

  • Organism #2 / Result 12 next | previous | overview
[Q] contig00026 vs [S] AF238884
Query view (% Id) / 69.7
Subj. % Id / 4.48
Align % Id / 83.84
E-val / 3.28e-64
Query Identifier / contig00026
Identifier / AF238884
Total View
Description / Botrytis virus F, complete genome.
Gene name / empty
  • See all subjects mapped to this query
  • See all queries mapped to this subject , [interactive view]

A part of your query matches a part of this sequence.

Align len= 365 nt, Score= 129, Eval= 3.30e-64, Identity= 83.84%, Similarity= 83.84%

Query len= 439 nt, pos= 64-428 nt (rv), Identity query= 69.7%, Alignment coverage query= 83.14%, Nb gaps query= 0

Subject len= 6827 nt, pos= 526-890 nt (fw), Identity subject= 4.48%, Alignment coverage subject= 5.35%, Nb gaps subject= 0

Q: 64 TACATGACTCCCCTTGATGTGTACACGCTATTTGCCACAAGCCCAGAAATGCACACACTT 123

|||||||| || |||||||| ||||| | || |||||||| || || |||||| | ||

S: 526 TACATGACCCCTCTTGATGTCTACACTTTGTTCGCCACAAGTCCGGAGATGCACTCTCTC 585

Q: 124 GTCGCCACTGCTGTCATCCCCCCTGAGTCCGTTGACCGCTTACCAGCCTTCTGGCCTGAA 183

|||||||| ||||| ||||| ||||| || ||||| ||| | || || ||||||||||||

S: 586 GTCGCCACCGCTGTTATCCCGCCTGAATCTGTTGATCGCCTGCCCGCTTTCTGGCCTGAA 645

Q: 184 CTGTACCAGCTCGCATACTACGAGGACCATCTCTGTTACGCCCCTGATGGAAATTTCGCC 243

|| ||||| || |||||||| |||||||| || || || || |||||||| || |||||

S: 646 CTTTACCAACTGGCATACTATGAGGACCACCTTTGCTATGCACCTGATGGGAACTTCGCT 705

Q: 244 GACGCATACAATCAACCTTTGGCTGCCCACCAGTGGATGACTATGAAGAGTCTACACGGC 303

||||| ||||| ||||| || ||||| ||||| |||||||| ||||| ||||| ||||||

S: 706 GACGCCTACAACCAACCCTTAGCTGCTCACCAATGGATGACCATGAAAAGTCTGCACGGC 765

Q: 304 CCTGATTTCACGCTCTCTGTTGATGTACCCGCGAGTCGATACAGCCACCATATCTTTGTC 363

|||||||||||||| || || ||||||||||| ||||| || ||||||||||||||||||

S: 766 CCTGATTTCACGCTTTCCGTCGATGTACCCGCCAGTCGTTATAGCCACCATATCTTTGTC 825

Q: 364 ATTTCTAAACGCCCTGGCCTACCTGACACCCATCGTGACTTCATGTGCCCTGACCTAGTT 423

|| || || |||||||| |||||||||| |||||||||||||||||||| ||| ||||

S: 826 ATATCCAAGCGCCCTGGTTTACCTGACACGCATCGTGACTTCATGTGCCCCGACTTAGTC 885

Q: 424 GAGCT 428

|||||

S: 886 GAGCT 890

  • Organism #2 / Result 13 next | previous | overview
[Q] contig00036 vs [S] AF238884
Query view (% Id) / 58.37
Subj. % Id / 5.57
Align % Id / 83.52
E-val / 1.51e-79
Query Identifier / contig00036
Identifier / AF238884
Total View
Description / Botrytis virus F, complete genome.
Gene name / empty
  • See all subjects mapped to this query
  • See all queries mapped to this subject , [interactive view]

A part of your query matches a part of this sequence.

Align len= 455 nt, Score= 155, Eval= 1.50e-79, Identity= 83.52%, Similarity= 83.52%

Query len= 651 nt, pos= 5-459 nt (fw), Identity query= 58.37%, Alignment coverage query= 69.89%, Nb gaps query= 0

Subject len= 6827 nt, pos= 1087-1541 nt (fw), Identity subject= 5.57%, Alignment coverage subject= 6.66%, Nb gaps subject= 0

Q: 5 GGCTCTGGTCTGTCACAAATGCAATTCCCTGATCGACCAGTCACGCCTCTGGACAATTTT 64

|||||||||||||| ||||||||||||||||| || || ||||| || |||||||||||

S: 1087 GGCTCTGGTCTGTCGCAAATGCAATTCCCTGACCGCCCTGTCACCCCACTGGACAATTTC 1146

Q: 65 ACCACAGCCCTCTGGTATCGCCTTCTTCCCTCCCGCTTGTACCGGTTACCTGCTACTATT 124

|||| ||||| ||||| ||| | || || |||||||||||||| |||||||| |||||

S: 1147 GCCACTGCCCTATGGTACCGCTTGCTCCCTTCCCGCTTGTACCGATTACCTGCCACTATC 1206

Q: 125 CGCAACTTTCAGCTCAAGGCCTTTGTCGACCAACTACGGACACCTCAATACCTACTGCAC 184

|||||||| |||||||| |||||||| || |||||||| || || |||||||| |||||

S: 1207 CGCAACTTCCAGCTCAAAGCCTTTGTTGATCAACTACGTACCCCCCAATACCTGTTGCAC 1266

Q: 185 TTCAAGTTGGACGAGTATCATCTCAGCAGCAATGACAAGTACAGCGATTTCTACCGGAAC 244

||||| || || ||||| || | |||||||| |||||||||||||| |||||||| ||

S: 1267 TTCAAATTAGATGAGTACCACTTGAGCAGCAACGACAAGTACAGCGACTTCTACCGCAAT 1326

Q: 245 GAAGCAAAACAGGCCAGCAGTAAAGACATGCTATCAGCATTTGAGGCCATTTGCTTCGGA 304

||| ||| ||| |||||||| ||||||||| |||| |||||||| || |||||||| ||

S: 1327 GAATCAAGACAAGCCAGCAGCAAAGACATGTTATCGGCATTTGAAGCAATTTGCTTTGGC 1386

Q: 305 GGAGCCCCTGAACTAGAAAAGAAAATCCTTGGTAACCAGAACCCTGCACCCTTCGCCACT 364

|| ||||||||||| |||||||| |||||||| ||| | ||||| ||||| ||||| |||

S: 1387 GGGGCCCCTGAACTTGAAAAGAAGATCCTTGGCAACAACAACCCAGCACCGTTCGCTACT 1446

Q: 365 GTACCCAATCCGCCCAGCCAGACTGCCCTTGGACTAGCCACCATCACTGCCGCGATTGCC 424

|| || |||||||| ||||| || || || ||||| ||||| ||||||||||| ||||||

S: 1447 GTCCCTAATCCGCCGAGCCAAACCGCTCTCGGACTTGCCACTATCACTGCCGCAATTGCC 1506

Q: 425 TTTGTTCTACCAAACCGCGCAGCTCGCTTAGCCCG 459

|| |||| || || ||||| || |||||| ||||

S: 1507 TTCATTCTGCCTAATCGCGCTGCCCGCTTAACCCG 1541

Organism #3: Cryphonectria hypovirus
  • Organism #3 / Result 14 next | previous | overview
[Q] contig00486 vs [S] AF188514
Query view (% Id) / 14.62
Subj. % Id / 1.76
Align % Id / 80.86
E-val / 1.19e-13
Query Identifier / contig00486
Identifier / AF188514
Total View
Description / Cryphonectria hypovirus 3 isolate CS polyprotein gene, complete cds.
Gene name / empty
  • See all subjects mapped to this query
  • See all queries mapped to this subject , [interactive view]

A part of your query matches a part of this sequence.

Align len= 209 nt, Score= 45, Eval= 1.20e-13, Identity= 80.86%, Similarity= 80.86%

Query len= 1156 nt, pos= 911-1118 nt (fw), Identity query= 14.62%, Alignment coverage query= 17.99%, Nb gaps query= 1

Subject len= 9591 nt, pos= 5591-5799 nt (fw), Identity subject= 1.76%, Alignment coverage subject= 2.18%, Nb gaps subject= 0

Q: 911 ATAGAGTCACCTGAAGCATTCCCAACTGTCAGTCATGCGTTTATTAAAGATGAAGTTCTT 970

|||||||| ||||||||||| || || ||||| |||||||||||||| ||||| ||| |

S: 5591 ATAGAGTCTCCTGAAGCATTTCCGACCGTCAGCCATGCGTTTATTAAGGATGAGGTTTTA 5650

Q: 971 CCCAAATCTTACATTGAACGGGA-AAAATACGAACGATTATAGCCCAAGACCCTCTAAAC 1029

|| |||||||| ||||||| || ||||| || || || || || ||||| ||| | |||

S: 5651 CCAAAATCTTATGTTGAACGTGAGAAAATTCGCACAATCATTGCACAAGATCCTTTGAAC 5710

Q: 1030 TACTACCTATCAATGGCAATTCAAGGTGATAGTGCAAAAAGGTTGGACCCTTCATCGTTC 1089

||||| |||||||||||| |||| || || ||||||||| | ||||| || || |||

S: 5711 TACTATCTATCAATGGCAGTTCAGGGAGACGCTGCAAAAAGACTTGACCCATCTTCATTC 5770

Q: 1090 TCAGCTGTTGGTATATCTCCCTCTCATGG 1118

|| ||||||||| |||||| ||||||||

S: 5771 TCGGCTGTTGGTGTATCTCGATCTCATGG 5799

  • Organism #3 / Result 15 next | previous | overview
[Q] contig00761 vs [S] AF188514
Query view (% Id) / 6.09
Subj. % Id / 0.84
Align % Id / 82.65
E-val / 1.23e-4
Query Identifier / contig00761
Identifier / AF188514
Total View
Description / Cryphonectria hypovirus 3 isolate CS polyprotein gene, complete cds.
Gene name / empty
  • See all subjects mapped to this query
  • See all queries mapped to this subject , [interactive view]

A part of your query matches a part of this sequence.

Align len= 98 nt, Score= 30, Eval= 1.20e-4, Identity= 82.65%, Similarity= 82.65%

Query len= 1331 nt, pos= 707-804 nt (rv), Identity query= 6.09%, Alignment coverage query= 7.36%, Nb gaps query= 0

Subject len= 9591 nt, pos= 2111-2208 nt (fw), Identity subject= 0.84%, Alignment coverage subject= 1.02%, Nb gaps subject= 0

Q: 707 TCTGTTTTCCCTGATAAACAGGTTTTTGAAGTGTGTCCGGTGCCAAGAGAGGACAACGGC 766

||||| |||||||| ||||| || ||||| |||||||| || ||| | |||||||| ||

S: 2111 TCTGTGTTCCCTGAAAAACAAGTCTTTGAGGTGTGTCCAGTTCCACGCGAGGACAATGGT 2170

Q: 767 GTTTGCCCTGAGTTCTACTTAGCACACTACTTCGAAGA 804

||||| ||||||||||| | | |||||||||| ||||

S: 2171 GTTTGTCCTGAGTTCTATCTTGGACACTACTTCAAAGA 2208

Organism #4: Fusarium poae (FUPO-1)
  • Organism #4 / Result 16 next | previous | overview
[Q] contig00474 vs [S] AF047013
Query view (% Id) / 9.71
Subj. % Id / 9.85
Align % Id / 86.11
E-val / 2.43e-53
Query Identifier / contig00474
Identifier / AF047013
Total View
Description / Fusarium poae virus 1 RNA2 putative RNA dependent RNA polymerase gene, complete cds.
Gene name / empty
  • See all subjects mapped to this query
  • See all queries mapped to this subject , [interactive view]

A part of your query matches a part of this sequence.

Align len= 252 nt, Score= 112, Eval= 2.40e-53, Identity= 86.11%, Similarity= 86.11%

Query len= 2234 nt, pos= 1641-1892 nt (rv), Identity query= 9.71%, Alignment coverage query= 11.28%, Nb gaps query= 0

Subject len= 2203 nt, pos= 1610-1861 nt (fw), Identity subject= 9.85%, Alignment coverage subject= 11.44%, Nb gaps subject= 0

Q: 1641 TCGATATGGAATGGTCTTATCTAAGACTAAATCCGTTATCACTGTCCTACGACAGCGAAT 1700

||||||||| |||||| |||||||||| ||||| | |||||| ||| ||||| |||

S: 1610 TCGATATGGTATGGTCCTATCTAAGACCAAATCTATAATCACTACCCTTCGACATAAAAT 1669

Q: 1701 CGAAACTCTAGGTTACCAATGCAATTTTGGACACCCCCGCCGCCCCATCGGCAAACTCGT 1760

||||||||| || || || ||||||||||| || |||||||| ||||||||||||||

S: 1670 CGAAACTCTTTCATATCAGTGTAATTTTGGACATCCTCGCCGCCCTATCGGCAAACTCGT 1729

Q: 1761 CGCTCAGCTCTGCTATCCAGAGCGTGGTCCACGACCCAAATACATGTCTGCTCGCGCAGT 1820

||| |||||||||| |||||||||||||||||||||||||||||||| || ||||| ||

S: 1730 CGCACAGCTCTGCTTCCCAGAGCGTGGTCCACGACCCAAATACATGTCAGCACGCGCTGT 1789

Q: 1821 CGGCATGGCCTGGGCCTCGTGTGCTCAAGACAAGACATTCCACGACTTCTGTCGCGATGT 1880

|||||||||||||||||| |||| |||||||| ||||| ||||||||||||||||||||

S: 1790 CGGCATGGCCTGGGCCTCTTGTGGCCAAGACAAAACATTTCACGACTTCTGTCGCGATGT 1849

Q: 1881 CTATTACGAGTT 1892

||| |||||||

S: 1850 GTATCACGAGTT 1861

Organism #5: Gremmeniella abietina
  • Organism #5 / Result 17 next | previous | overview
[Q] contig00505 vs [S] AY089993
Query view (% Id) / 40.98
Subj. % Id / 4.71
Align % Id / 88.42
E-val / 5.08e-18
Query Identifier / contig00505
Identifier / AY089993
Total View
Description / Gremmeniella abietina RNA virus MS1 putative replicase gene, complete cds.
Gene name / empty
  • See all subjects mapped to this query
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A part of your query matches a part of this sequence.

Align len= 95 nt, Score= 51, Eval= 5.10e-18, Identity= 88.42%, Similarity= 88.42%

Query len= 205 nt, pos= 14-108 nt (rv), Identity query= 40.98%, Alignment coverage query= 46.34%, Nb gaps query= 0

Subject len= 1782 nt, pos= 1020-1114 nt (fw), Identity subject= 4.71%, Alignment coverage subject= 5.33%, Nb gaps subject= 0

Q: 14 CGCCAAAAGTGGCGAAACGTTTGGGACGGTATGGTTTGGTACTTTATCAATACACCCATC 73

|||||||||||||| ||||||||||| ||||||||||||||||| ||||| || || |||

S: 1020 CGCCAAAAGTGGCGTAACGTTTGGGATGGTATGGTTTGGTACTTCATCAACACGCCTATC 1079

Q: 74 TTGATGCCAGATGGCCGAATGTTTCGAAAGAGACG 108

|| ||||| || ||||| |||||||| ||||||||

S: 1080 TTAATGCCTGACGGCCGCATGTTTCGCAAGAGACG 1114

Organism #6: Cherry chlorotic
  • Organism #6 / Result 18 previous | overview

[Q] contig00444 vs [S] AM181142

Query view (% Id) / 2.69
Subj. % Id / 3.12
Align % Id / 82.22
E-val / 1.64e-9
Query Identifier / contig00444
Identifier / AM181142
Total View
Description / Cherry chlorotic rusty spot associated totiviral-like dsRNA 4 partial RdRp gene for putative RNA-dependent RNA polymerase, genomic RNA, from Campania, Italy.
Gene name / RdRp
  • See all subjects mapped to this query
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A part of your query matches a part of this sequence.

Align len= 135 nt, Score= 39, Eval= 1.60e-9, Identity= 82.22%, Similarity= 82.22%

Query len= 4119 nt, pos= 3134-3268 nt (rv), Identity query= 2.69%, Alignment coverage query= 3.28%, Nb gaps query= 0

Subject len= 3557 nt, pos= 3259-3393 nt (fw), Identity subject= 3.12%, Alignment coverage subject= 3.8%, Nb gaps subject= 0

Q: 3134 ATAGGATACACCCTCCAACTGGGAAAGTGCTTTTTGCAAGGAGTTAGAGAGTTCCTCAGA 3193

||||||||||| || || |||| |||||||| ||||| || || ||||||||||| |

S: 3259 ATAGGATACACTCTGCAGTTGGGGAAGTGCTTCTTGCAGGGGGTGAGAGAGTTCCTGCGG 3318

Q: 3194 ATATCACACAAGAACGCAAACACGTCACAATATCTAGCCAGGTCGGCAGCGACGGCAGTA 3253

||||| |||||||| || ||||| || ||||| |||| ||||| |||||||| ||| ||

S: 3319 ATATCGCACAAGAATGCGAACACCTCTCAATACTTAGCAAGGTCAGCAGCGACTGCAATA 3378

Q: 3254 CACGGCAGGATAGAA 3268

|| ||||||||||||

S: 3379 CATGGCAGGATAGAA 3393