Annex 2
Al Rwahnih M, Daubert S, Úrbez-Torres JR, Cordero F, Rowhani A
Deep sequencing evidence from single grapevine plants reveals a virome dominated by mycoviruses.
Archives of Virology
Department of Plant Pathology, University of California, Davis, California
1 Shields Avenue, Davis, CA 95616
Subject Database / The subject database is composed of 105735964 nucleotide sequences.Database / Version / Release Date / Database Status
Genbank - Bacterial division / 178 / Jul 8, 2010 / Most Recent
Genbank - Environmental Samples / 178 / Jul 8, 2010 / Most Recent
Genbank - Expressed Sequence Tags division / 178 / Jul 8, 2010 / Most Recent
Genbank - Genome Survey Sequences division / 178 / Jul 5, 2010 / Most Recent
Genbank - High-throughput cDNA division / 178 / Jul 9, 2010 / Most Recent
Genbank - High-throughput Genomic sequences division / 178 / Jul 9, 2010 / Most Recent
Genbank - Invertebrate division / 178 / Jul 8, 2010 / Most Recent
Genbank - Other Mammalian division / 178 / Jul 9, 2010 / Most Recent
Genbank - Bacteriophage division / 178 / Jul 9, 2010 / Most Recent
Genbank - Plant / fungal / algal division / 178 / Jul 8, 2010 / Most Recent
Genbank - Primate division / 178 / Jul 9, 2010 / Most Recent
Genbank - Rodent division / 178 / Jul 8, 2010 / Most Recent
GB SET / 178 / Jul 9, 2010 / Most Recent
Genbank - Sequence Tagged Sites division / 178 / Jul 9, 2010 / Most Recent
Genbank - Synthetic division / 178 / Jul 8, 2010 / Most Recent
Genbank - Unannotated division / 178 / Jul 9, 2010 / Most Recent
Genbank - Viral division / 178 / Jul 8, 2010 / Most Recent
Genbank - Other Vertebrate division / 178 / Jul 9, 2010 / Most Recent
Search Strategy / The search strategy was Blast with scoring matrix NUC.3.1, an expect cutoff of 10 and word size 11.
Keep the best alignments / For each query, the 1 best alignments were kept. In this case "best alignment" means the alignment with the highest score.
Alignments Grouped by Organism [top]
Organism #1: Botryotinia fuckeliana
- Organism #1 / Result 1 next | overview
[Q] contig00151 vs [S] AM491608
Query view (% Id) / 65.8Subj. % Id / 2.89
Align % Id / 81.28
E-val / 1.41e-15
Query Identifier / contig00151
Identifier / AM491608
Total View
Description / Botryotinia fuckeliana totivirus 1, complete genome, genomic RNA.
Gene name / CP, RdRp
- See all subjects mapped to this query
- See all queries mapped to this subject , [interactive view]
A part of your query matches a part of this sequence.
Align len= 187 nt, Score= 47, Eval= 1.40e-15, Identity= 81.28%, Similarity= 81.28%
Query len= 231 nt, pos= 37-223 nt (fw), Identity query= 65.8%, Alignment coverage query= 80.95%, Nb gaps query= 0
Subject len= 5261 nt, pos= 4903-5089 nt (fw), Identity subject= 2.89%, Alignment coverage subject= 3.55%, Nb gaps subject= 0
Q: 37 GAGGTATTCTAGAGAGCTACCCCCTCATACGGTTACTCGAAAACCGTTTGAGTGATGAAG 96
||||||||||||| ||||| || || || ||||||||||| |||||| |||| || ||||
S: 4903 GAGGTATTCTAGAAAGCTATCCACTTATTCGGTTACTCGAGAACCGTCTGAGCGACGAAG 4962
Q: 97 ACTTGAAGGAGCTTGCCCTTCTTTGTGGAGTGTCATGCTCCACTAAAGAAGCCCGAGTGA 156
|| | ||| || || ||||| |||||| |||||||||||||||||||| ||||
S: 4963 ACCTTCGGGAACTCGCACTTCTCCTTGGAGTATCATGCTCCACTAAAGAAGCGAGAGTCT 5022
Q: 157 TCTGTTTTGGGCCTGAATCACTTTCCCATAACATCATTGGATATTTACCATATAGTGATG 216
||| |||||| |||| |||||| | ||||||||||| || ||| |||| || |||||||
S: 5023 GCTGCTTTGGGTCTGAGTCACTTACTCATAACATCATAGGGTATCTACCCTACAGTGATG 5082
Q: 217 CTGCGTC 223
|||||||
S: 5083 CTGCGTC 5089
- Organism #1 / Result 2 next | previous | overview
[Q] contig00449 vs [S] AM491608
Query view (% Id) / 45.29Subj. % Id / 5.30
Align % Id / 79.94
E-val / 2.98e-28
Query Identifier / contig00449
Identifier / AM491608
Total View
Description / Botryotinia fuckeliana totivirus 1, complete genome, genomic RNA.
Gene name / CP, RdRp
- See all subjects mapped to this query
- See all queries mapped to this subject , [interactive view]
A part of your query matches a part of this sequence.
Align len= 349 nt, Score= 69, Eval= 3.00e-28, Identity= 79.94%, Similarity= 79.94%
Query len= 616 nt, pos= 8-356 nt (rv), Identity query= 45.29%, Alignment coverage query= 56.66%, Nb gaps query= 0
Subject len= 5261 nt, pos= 4063-4411 nt (fw), Identity subject= 5.3%, Alignment coverage subject= 6.63%, Nb gaps subject= 0
Q: 8 TAGGCACACTAGCCAGCGGACACAGAGGGACATCATTCATTAATTCTCTCTGTAATGCCG 67
||||||| || || ||||| ||||||||||||||||||||||| || ||| || || |
S: 4063 TAGGCACGCTGGCAAGCGGGCACAGAGGGACATCATTCATTAACTCCCTCCTGAACGCAG 4122
Q: 68 CGTACATTCGTTGCGCTCTCGGAGCTGCTAGATTCGACTCGATGTTGAGTCTGCACGCTG 127
| |||||||| || ||||| || ||||| | |||||| | ||| |||| ||||||| |
S: 4123 CTTACATTCGGTGTGCTCTTGGGGCTGCAAAGTTCGACACTATGCTGAGCTTGCACGCGG 4182
Q: 128 GTGATGACGTGTATATTAGGGCTAACACTCTTAGTGACGCCGCTGATATACTCAGGAAAT 187
| || ||||| ||||| | || ||||| || ||||| || || ||||| || | |||||
S: 4183 GGGACGACGTATATATCCGCGCCAACACGCTGAGTGAAGCGGCGGATATCCTGAAGAAAT 4242
Q: 188 GTAAGGAGTTTGGCTGTAGGATGAACCCGACGAAACAAAGCATCGGATTCAAGAATGCCG 247
||||| |||||| ||||||||||| || ||||| || || || ||||||| |||||| |
S: 4243 GTAAGATGTTTGGATGTAGGATGAATCCCACGAAGCAGAGTATTGGATTCAGGAATGCAG 4302
Q: 248 AGTTTTTGCGACTCGGAATAAACTCTCGTTACGCTATCGGGTATGTGGCAAGGACCATAT 307
| || || | | ||||| |||||||||||||| | ||||||||||| || |||||||
S: 4303 AATTCTTAAGGTTAGGAATTAACTCTCGTTACGCCGTAGGGTATGTGGCCAGAACCATAT 4362
Q: 308 CTACACTGGTAGCAGGCAATTGGTCTAACCTAGACCCTATGGAACCCCT 356
| || || || ||||| |||||||||||||||||||| |||||||||||
S: 4363 CGACCCTAGTGGCAGGAAATTGGTCTAACCTAGACCCCATGGAACCCCT 4411
- Organism #1 / Result 3 next | previous | overview
[Q] contig00462 vs [S] AM491608
Query view (% Id) / 39.97Subj. % Id / 6.06
Align % Id / 78.19
E-val / 5.44e-18
Query Identifier / contig00462
Identifier / AM491608
Total View
Description / Botryotinia fuckeliana totivirus 1, complete genome, genomic RNA.
Gene name / CP, RdRp
- See all subjects mapped to this query
- See all queries mapped to this subject , [interactive view]
A part of your query matches a part of this sequence.
Align len= 408 nt, Score= 52, Eval= 5.40e-18, Identity= 78.19%, Similarity= 78.19%
Query len= 798 nt, pos= 46-453 nt (rv), Identity query= 39.97%, Alignment coverage query= 51.13%, Nb gaps query= 0
Subject len= 5261 nt, pos= 1528-1935 nt (fw), Identity subject= 6.06%, Alignment coverage subject= 7.76%, Nb gaps subject= 0
Q: 46 ACTGCTCTGGATGTCGACAACCGGCACCTCCGACACGCATCGGTGTCACCGTGGTTCTGG 105
||||| ||||| || |||||||||||||| ||||| || ||||| || |||||||||
S: 1528 ACTGCGCTGGACGTGGACAACCGGCACCTTAAGCACGCGTCAGTGTCTCCTTGGTTCTGG 1587
Q: 106 ATAGAACCGACAAGTATCTTACCGCCGAACCTACTCGGTTCAGAGGCTGAGATCGAAGGT 165
| |||||||| || ||| |||| || |||||||| || || || |||||| | || ||
S: 1588 GTGGAACCGACCAGCATCCTACCCCCCAACCTACTTGGGTCGGAAGCTGAGCTAGAGGGG 1647
Q: 166 TGCGCCTCCTTGGCGTATAAAGATACTGTCGTGTCCAAACCCGCGTGGGATACGATAACT 225
|| || || |||| | |||||||| || || || ||||| || ||||| || || ||
S: 1648 TGTGCATCACTGGCACACAAAGATACGGTGGTCTCAAAACCAGCCTGGGACACCATTACC 1707
Q: 226 AGGGTGGGCTCAAGTGACGTGTCTTTTTCTGCGTATCGTGCTCGTTTTAAATTCGCACGA 285
|||||||| || || |||||||| ||||| |||||||| || || || || || || ||
S: 1708 AGGGTGGGTTCGAGCGACGTGTCCTTTTCCGCGTATCGCGCGCGATTCAAGTTTGCCCGC 1767
Q: 286 CAAACGTGGTTTTTCAACCACTGGCTTAACCACCCCATGAATGGCCTCGGGGCTATGAAG 345
||||| ||||| || ||||| ||||| |||||||| ||||| || ||||| |||||||||
S: 1768 CAAACTTGGTTCTTTAACCATTGGCTCAACCACCCAATGAACGGGCTCGGTGCTATGAAG 1827
Q: 346 GTCAGACAACTCGATCCCAATGGTATCATACACCCTGGGCCCTGTGCCGCACATCCTCAA 405
|| |||| || || || ||||||||||| || || ||||||||| | || || || ||
S: 1828 GTACGACAGCTTGACCCAAATGGTATCATCCATCCGGGGCCCTGTACGGCCCACCCGCAG 1887
Q: 406 GTGCGAGACCGTGTCGAAGCTGACCTTCCGTTCACGGATTACCTCTGG 453
||| ||||||| ||||| || ||||| || || || || |||||||||
S: 1888 GTGAGAGACCGGGTCGAGGCGGACCTACCTTTTACTGACTACCTCTGG 1935
- Organism #1 / Result 4 next | previous | overview
[Q] contig00250 vs [S] AM491608
Query view (% Id) / 38.96Subj. % Id / 5.00
Align % Id / 79.22
E-val / 1.88e-20
Query Identifier / contig00250
Identifier / AM491608
Total View
Description / Botryotinia fuckeliana totivirus 1, complete genome, genomic RNA.
Gene name / CP, RdRp
- See all subjects mapped to this query
- See all queries mapped to this subject , [interactive view]
A part of your query matches a part of this sequence.
Align len= 332 nt, Score= 56, Eval= 1.90e-20, Identity= 79.22%, Similarity= 79.22%
Query len= 675 nt, pos= 327-658 nt (rv), Identity query= 38.96%, Alignment coverage query= 49.19%, Nb gaps query= 0
Subject len= 5261 nt, pos= 3624-3955 nt (fw), Identity subject= 5%, Alignment coverage subject= 6.31%, Nb gaps subject= 0
Q: 327 TACAGACGGATGGCTGCCGAGGAGGTCCACATCAACCCCGTACCCTCATGGGACGGTACC 386
|||||||| |||||||| |||||||| |||| |||||| ||||| |||||||| ||
S: 3624 TACAGACGCATGGCTGCAGAGGAGGTACACAGCAACCCAGTACCAGACTGGGACGGCACA 3683
Q: 387 ACTTCTGTCTCGGCAAGCATCAAACTAGAAGCAGGCAAAGATCGAGCTATCTTCGCCTGT 446
||||| || || || || ||||| || || ||||| || ||||| || |||||||| ||
S: 3684 ACTTCGGTATCAGCGAGTATCAAGCTCGAGGCAGGTAAGGATCGCGCAATCTTCGCTTGC 3743
Q: 447 GATACTAGGTCTTACTTCGCTTTTTCCTGGATACTCAATGACGTCCAAAAGAGGTGGAGG 506
|| || | ||||||||||| || || ||||||||||||||||| ||||||| ||||| |
S: 3744 GACACCCGTTCTTACTTCGCGTTCTCGTGGATACTCAATGACGTGCAAAAGAAGTGGAAG 3803
Q: 507 GGTGAGCGTATACTGCTGGATCCGGGGAAGGGTGGTTTGTACGGTATCTCGCGTAGGATA 566
|| ||| | || | ||||||| ||||| || || ||||||||||||| || | ||
S: 3804 GGGGAGAGGATCCCTTTGGATCCAGGGAAAGGCGGACTGTACGGTATCTCACGCCGAATC 3863
Q: 567 CGCAACTGTCAGAAGGGCGGTGGCGTCAACCTAATGCTCGACTACGACAATTTCAACTCT 626
|| ||| |||||| || ||||| ||||| | ||||| ||||||||||| || |||||
S: 3864 CGTAACAGTCAGAGAGGAGGTGGAGTCAATTTGATGCTTGACTACGACAACTTTAACTCG 3923
Q: 627 CATCACTCTAACTCTGTCCAGAGTATGATCTT 658
|||||||| ||| |||||||||||||||||
S: 3924 CATCACTCCAACAGCGTCCAGAGTATGATCTT 3955
- Organism #1 / Result 5 next | previous | overview
[Q] contig00473 vs [S] AM491608
Query view (% Id) / 31.73Subj. % Id / 2.76
Align % Id / 79.67
E-val / 1.68e-7
Query Identifier / contig00473
Identifier / AM491608
Total View
Description / Botryotinia fuckeliana totivirus 1, complete genome, genomic RNA.
Gene name / CP, RdRp
- See all subjects mapped to this query
- See all queries mapped to this subject , [interactive view]
A part of your query matches a part of this sequence.
Align len= 182 nt, Score= 34, Eval= 1.70e-7, Identity= 79.67%, Similarity= 79.67%
Query len= 457 nt, pos= 2-183 nt (rv), Identity query= 31.73%, Alignment coverage query= 39.82%, Nb gaps query= 0
Subject len= 5261 nt, pos= 1690-1871 nt (fw), Identity subject= 2.76%, Alignment coverage subject= 3.46%, Nb gaps subject= 0
Q: 2 GCCTGGGATACTATAACTAGGGTCGGGTCCAGCGACGTTTCTTTCTCTGCGTACCGTGCG 61
|||||||| || || || ||||| || || |||||||| || || || ||||| || |||
S: 1690 GCCTGGGACACCATTACCAGGGTGGGTTCGAGCGACGTGTCCTTTTCCGCGTATCGCGCG 1749
Q: 62 CGTTTCAAGTTCGCGAGGCAGACTTGGTTCTTCAATCATTGGTTGAACCACCCGATGAAC 121
|| |||||||| || | || ||||||||||| || |||||| | |||||||| ||||||
S: 1750 CGATTCAAGTTTGCCCGCCAAACTTGGTTCTTTAACCATTGGCTCAACCACCCAATGAAC 1809
Q: 122 GGTTTAGGTGCGATGAAGGTGCGGCAGCTCGATCCGAACGGCATCATACACCCGGGGCCC 181
|| | ||||| |||||||| || ||||| || || || || ||||| || |||||||||
S: 1810 GGGCTCGGTGCTATGAAGGTACGACAGCTTGACCCAAATGGTATCATCCATCCGGGGCCC 1869
Q: 182 TG 183
||
S: 1870 TG 1871
- Organism #1 / Result 6 next | previous | overview
[Q] contig00271 vs [S] AM491608
Query view (% Id) / 30.25Subj. % Id / 1.62
Align % Id / 81.73
E-val / 3.82e-4
Query Identifier / contig00271
Identifier / AM491608
Total View
Description / Botryotinia fuckeliana totivirus 1, complete genome, genomic RNA.
Gene name / CP, RdRp
- See all subjects mapped to this query
- See all queries mapped to this subject , [interactive view]
A part of your query matches a part of this sequence.
Align len= 104 nt, Score= 28, Eval= 3.80e-4, Identity= 81.73%, Similarity= 81.73%
Query len= 281 nt, pos= 166-269 nt (fw), Identity query= 30.25%, Alignment coverage query= 37.01%, Nb gaps query= 0
Subject len= 5261 nt, pos= 3624-3727 nt (fw), Identity subject= 1.62%, Alignment coverage subject= 1.98%, Nb gaps subject= 0
Q: 166 TACAGACGGATGGCTGCCGAGGAGGTCCATGTCAACCCTGTTCCATCATGGGATGGTACA 225
|||||||| |||||||| |||||||| || |||||| || ||| ||||| || |||
S: 3624 TACAGACGCATGGCTGCAGAGGAGGTACACAGCAACCCAGTACCAGACTGGGACGGCACA 3683
Q: 226 ACCTCTGTCTCAGCCAGTGTCAAGCTCGAAGCAGGTAAGGATCG 269
|| || || ||||| ||| |||||||||| ||||||||||||||
S: 3684 ACTTCGGTATCAGCGAGTATCAAGCTCGAGGCAGGTAAGGATCG 3727
- Organism #1 / Result 7 next | previous | overview
[Q] contig00720 vs [S] AM491608
Query view (% Id) / 29.4Subj. % Id / 2.51
Align % Id / 83.54
E-val / 1.92e-19
Query Identifier / contig00720
Identifier / AM491608
Total View
Description / Botryotinia fuckeliana totivirus 1, complete genome, genomic RNA.
Gene name / CP, RdRp
- See all subjects mapped to this query
- See all queries mapped to this subject , [interactive view]
A part of your query matches a part of this sequence.
Align len= 158 nt, Score= 54, Eval= 1.90e-19, Identity= 83.54%, Similarity= 83.54%
Query len= 449 nt, pos= 291-448 nt (rv), Identity query= 29.4%, Alignment coverage query= 35.19%, Nb gaps query= 0
Subject len= 5261 nt, pos= 4251-4408 nt (fw), Identity subject= 2.51%, Alignment coverage subject= 3%, Nb gaps subject= 0
Q: 291 TTTGGTTGTAGGATGAATCCAACAAAGCAAAGCATCGGATTCAGGAATGCCGAGTTCTTA 350
||||| |||||||||||||| || ||||| || || |||||||||||||| || ||||||
S: 4251 TTTGGATGTAGGATGAATCCCACGAAGCAGAGTATTGGATTCAGGAATGCAGAATTCTTA 4310
Q: 351 CGTCTCGGAATCAACTCTCGTTACGCTATCGGTTATGTCGCCAGGACAATATCCACACTG 410
| | ||||| |||||||||||||| | || ||||| ||||| || ||||| || ||
S: 4311 AGGTTAGGAATTAACTCTCGTTACGCCGTAGGGTATGTGGCCAGAACCATATCGACCCTA 4370
Q: 411 GTAGCAGGCAATTGGTCTAACCTAGACCCAATGGAACC 448
|| ||||| |||||||||||||||||||| ||||||||
S: 4371 GTGGCAGGAAATTGGTCTAACCTAGACCCCATGGAACC 4408
- Organism #1 / Result 8 next | previous | overview
[Q] contig00626 vs [S] AM491608
Query view (% Id) / 19.48Subj. % Id / 2.70
Align % Id / 80.68
E-val / 7.18e-11
Query Identifier / contig00626
Identifier / AM491608
Total View
Description / Botryotinia fuckeliana totivirus 1, complete genome, genomic RNA.
Gene name / CP, RdRp
- See all subjects mapped to this query
- See all queries mapped to this subject , [interactive view]
A part of your query matches a part of this sequence.
Align len= 176 nt, Score= 40, Eval= 7.20e-11, Identity= 80.68%, Similarity= 80.68%
Query len= 729 nt, pos= 83-258 nt (fw), Identity query= 19.48%, Alignment coverage query= 24.14%, Nb gaps query= 0
Subject len= 5261 nt, pos= 775-950 nt (fw), Identity subject= 2.7%, Alignment coverage subject= 3.35%, Nb gaps subject= 0
Q: 83 GGCACTTACGACGGGCCAGTCAACTCTTTGACTGATGCCGTCTACATACCGAGGTTGGTG 142
||||| || ||||| |||||||| || ||||||| ||||| |||||||| ||| ||||
S: 775 GGCACCTATGACGGCCCAGTCAATTCGCTGACTGACGCCGTGTACATACCAAGGCTGGTA 834
Q: 143 AATACCACCTTGACCGGCGATGTGTTCGCCGTCCTTTGTAACGCCGTGGCTGGTGAGGGA 202
|| ||||||||||| || || || ||||| || | ||||||||||| |||||||||||
S: 835 AACACCACCTTGACAGGTGACGTCTTCGCGGTGTTATGTAACGCCGTTGCTGGTGAGGGC 894
Q: 203 TCACAAGTGGTCTCTGATGTTGTCGAGCTTGATGCGAACACGCGTCAACCTATAAT 258
|| || || || ||||| || || ||||| ||||| ||||| || ||||| |||||
S: 895 TCGCAGGTCGTTTCTGACGTCGTTGAGCTCGATGCCAACACCCGCCAACCCATAAT 950
- Organism #1 / Result 9 next | previous | overview
[Q] contig00510 vs [S] AM491608
Query view (% Id) / 13.71Subj. % Id / 1.62
Align % Id / 84.16
E-val / 3.75e-9
Query Identifier / contig00510
Identifier / AM491608
Total View
Description / Botryotinia fuckeliana totivirus 1, complete genome, genomic RNA.
Gene name / CP, RdRp
- See all subjects mapped to this query
- See all queries mapped to this subject , [interactive view]
A part of your query matches a part of this sequence.
Align len= 101 nt, Score= 37, Eval= 3.70e-9, Identity= 84.16%, Similarity= 84.16%
Query len= 620 nt, pos= 140-240 nt (rv), Identity query= 13.71%, Alignment coverage query= 16.29%, Nb gaps query= 0
Subject len= 5261 nt, pos= 2970-3070 nt (fw), Identity subject= 1.62%, Alignment coverage subject= 1.92%, Nb gaps subject= 0
Q: 140 AGGAGGGGGTATCACCGGAAGTTGGGTAATGCCATCATTACCAATACCGAGCTAAGGGAC 199
|||||||| || ||||| ||| | ||||| || || |||||||| | ||||| ||||||
S: 2970 AGGAGGGGCTACCACCGAAAGCTAGGTAACGCTATAATTACCAACAAGGAGCTTAGGGAC 3029
Q: 200 TCACTCTTCCCTAAGAAGAAACACAACGCAGCAGGCGTTAA 240
|| |||||||||||||||||||| |||||||| || |||||
S: 3030 TCCCTCTTCCCTAAGAAGAAACATAACGCAGCCGGTGTTAA 3070
Organism #2: Botrytis virus
- Organism #2 / Result 10 next | previous | overview
[Q] contig00073 vs [S] AF238884
Query view (% Id) / 83.05Subj. % Id / 3.59
Align % Id / 83.62
E-val / 2.69e-45
Query Identifier / contig00073
Identifier / AF238884
Total View
Description / Botrytis virus F, complete genome.
Gene name / empty
- See all subjects mapped to this query
- See all queries mapped to this subject , [interactive view]
A part of your query matches a part of this sequence.
Align len= 293 nt, Score= 97, Eval= 2.70e-45, Identity= 83.62%, Similarity= 83.62%
Query len= 295 nt, pos= 4-295 nt (fw), Identity query= 83.05%, Alignment coverage query= 98.98%, Nb gaps query= 1
Subject len= 6827 nt, pos= 4057-4349 nt (fw), Identity subject= 3.59%, Alignment coverage subject= 4.29%, Nb gaps subject= 0
Q: 4 CATGTCAACCGGTACATCCCTAGCCATCTCCGCAATGTGAACCAAGCCGTCCC-CGCCGC 62
||||||||||||||||| || ||||| || ||||| || |||||||||||||| ||||||
S: 4057 CATGTCAACCGGTACATACCCAGCCACCTTCGCAACGTCAACCAAGCCGTCCCGCGCCGC 4116
Q: 63 AACGCCGCCACCAACCCTGACGCCCTGCCGAGCCAACGCGTACTCCCTGGAGGCCGAGCC 122
||||| |||| |||||||||||| ||||| ||||| ||| |||||||||| |||| | ||
S: 4117 AACGCTGCCAGCAACCCTGACGCTCTGCCAAGCCAGCGCATACTCCCTGGGGGCCAATCC 4176
Q: 123 CCTACAGCTGAACCCTGACAATCACAGACAAGCGCATTGCCCACTGGCGGAAAAGTCATT 182
| || |||||||| |||||||||||| | ||||| |||||||||| ||| | | ||||
S: 4177 ACCACTGCTGAACCATGACAATCACAGGCCAGCGCGCTGCCCACTGGAGGAGAGGCCATT 4236
Q: 183 AACGTCCCGGCCCTTGACCGCCAAGATCCCCAACGCTTCCCACAGCTGAAAGTCTTGCCC 242
||||||| || |||||||| ||||| || |||||||| |||||||| |||||||| ||
S: 4237 GACGTCCCTGCACTTGACCGGCAAGACCCGCAACGCTTTCCACAGCTAAAAGTCTTACCT 4296
Q: 243 CATCTTTGTGGCCACATTGGTGACTACGCAGAGGCTTTTTACCCTGAGCCTGA 295
|||||||| || ||||||| || ||| |||| || | ||||||||| |||||
S: 4297 CATCTTTGCGGTTACATTGGCGATTACTCAGAAGCCTCTTACCCTGAACCTGA 4349
- Organism #2 / Result 11 next | previous | overview
[Q] contig00085 vs [S] AF238884
Query view (% Id) / 73.47Subj. % Id / 2.64
Align % Id / 83.72
E-val / 2.95e-32
Query Identifier / contig00085
Identifier / AF238884
Total View
Description / Botrytis virus F, complete genome.
Gene name / empty
- See all subjects mapped to this query
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A part of your query matches a part of this sequence.
Align len= 215 nt, Score= 75, Eval= 2.90e-32, Identity= 83.72%, Similarity= 83.72%
Query len= 245 nt, pos= 4-218 nt (fw), Identity query= 73.47%, Alignment coverage query= 87.76%, Nb gaps query= 0
Subject len= 6827 nt, pos= 4939-5153 nt (fw), Identity subject= 2.64%, Alignment coverage subject= 3.15%, Nb gaps subject= 0
Q: 4 TGGGGCCCTTACGCTCGATACATTGATCGCCGCATACGAGCACTGCTGCCACCGCACATC 63
||||| |||||||| || |||||||| || |||||||||||||| ||||| || ||| ||
S: 4939 TGGGGACCTTACGCCCGCTACATTGACCGACGCATACGAGCACTTCTGCCGCCACACGTC 4998
Q: 64 TACATCCACAGCCGCAGAACCAATGAAGACTTTGAGCAATTCGTGGCGACTCACTGGGAC 123
||||||||||||||| | ||||||||||| |||||| ||||||| || | ||||||||
S: 4999 TACATCCACAGCCGCCGCACCAATGAAGATTTTGAGAAATTCGTAGCTGCCCACTGGGAT 5058
Q: 124 CACACAAGAGAATCCACGGATGGTGATTACACTGCCTACGACGCATCACAAGACGCCACC 183
|||||| | ||||| || ||||| || |||||||| || ||||| || || || || ||
S: 5059 CACACACGGGAATCGACCGATGGCGACTACACTGCGTATGACGCTTCGCAGGATGCAACT 5118
Q: 184 TTTGTCAACTTTGAAACGCTGCTCATGCGCAGGCT 218
||||||||||||||||| || ||||||||| ||||
S: 5119 TTTGTCAACTTTGAAACCCTCCTCATGCGCCGGCT 5153
- Organism #2 / Result 12 next | previous | overview
[Q] contig00026 vs [S] AF238884
Query view (% Id) / 69.7Subj. % Id / 4.48
Align % Id / 83.84
E-val / 3.28e-64
Query Identifier / contig00026
Identifier / AF238884
Total View
Description / Botrytis virus F, complete genome.
Gene name / empty
- See all subjects mapped to this query
- See all queries mapped to this subject , [interactive view]
A part of your query matches a part of this sequence.
Align len= 365 nt, Score= 129, Eval= 3.30e-64, Identity= 83.84%, Similarity= 83.84%
Query len= 439 nt, pos= 64-428 nt (rv), Identity query= 69.7%, Alignment coverage query= 83.14%, Nb gaps query= 0
Subject len= 6827 nt, pos= 526-890 nt (fw), Identity subject= 4.48%, Alignment coverage subject= 5.35%, Nb gaps subject= 0
Q: 64 TACATGACTCCCCTTGATGTGTACACGCTATTTGCCACAAGCCCAGAAATGCACACACTT 123
|||||||| || |||||||| ||||| | || |||||||| || || |||||| | ||
S: 526 TACATGACCCCTCTTGATGTCTACACTTTGTTCGCCACAAGTCCGGAGATGCACTCTCTC 585
Q: 124 GTCGCCACTGCTGTCATCCCCCCTGAGTCCGTTGACCGCTTACCAGCCTTCTGGCCTGAA 183
|||||||| ||||| ||||| ||||| || ||||| ||| | || || ||||||||||||
S: 586 GTCGCCACCGCTGTTATCCCGCCTGAATCTGTTGATCGCCTGCCCGCTTTCTGGCCTGAA 645
Q: 184 CTGTACCAGCTCGCATACTACGAGGACCATCTCTGTTACGCCCCTGATGGAAATTTCGCC 243
|| ||||| || |||||||| |||||||| || || || || |||||||| || |||||
S: 646 CTTTACCAACTGGCATACTATGAGGACCACCTTTGCTATGCACCTGATGGGAACTTCGCT 705
Q: 244 GACGCATACAATCAACCTTTGGCTGCCCACCAGTGGATGACTATGAAGAGTCTACACGGC 303
||||| ||||| ||||| || ||||| ||||| |||||||| ||||| ||||| ||||||
S: 706 GACGCCTACAACCAACCCTTAGCTGCTCACCAATGGATGACCATGAAAAGTCTGCACGGC 765
Q: 304 CCTGATTTCACGCTCTCTGTTGATGTACCCGCGAGTCGATACAGCCACCATATCTTTGTC 363
|||||||||||||| || || ||||||||||| ||||| || ||||||||||||||||||
S: 766 CCTGATTTCACGCTTTCCGTCGATGTACCCGCCAGTCGTTATAGCCACCATATCTTTGTC 825
Q: 364 ATTTCTAAACGCCCTGGCCTACCTGACACCCATCGTGACTTCATGTGCCCTGACCTAGTT 423
|| || || |||||||| |||||||||| |||||||||||||||||||| ||| ||||
S: 826 ATATCCAAGCGCCCTGGTTTACCTGACACGCATCGTGACTTCATGTGCCCCGACTTAGTC 885
Q: 424 GAGCT 428
|||||
S: 886 GAGCT 890
- Organism #2 / Result 13 next | previous | overview
[Q] contig00036 vs [S] AF238884
Query view (% Id) / 58.37Subj. % Id / 5.57
Align % Id / 83.52
E-val / 1.51e-79
Query Identifier / contig00036
Identifier / AF238884
Total View
Description / Botrytis virus F, complete genome.
Gene name / empty
- See all subjects mapped to this query
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A part of your query matches a part of this sequence.
Align len= 455 nt, Score= 155, Eval= 1.50e-79, Identity= 83.52%, Similarity= 83.52%
Query len= 651 nt, pos= 5-459 nt (fw), Identity query= 58.37%, Alignment coverage query= 69.89%, Nb gaps query= 0
Subject len= 6827 nt, pos= 1087-1541 nt (fw), Identity subject= 5.57%, Alignment coverage subject= 6.66%, Nb gaps subject= 0
Q: 5 GGCTCTGGTCTGTCACAAATGCAATTCCCTGATCGACCAGTCACGCCTCTGGACAATTTT 64
|||||||||||||| ||||||||||||||||| || || ||||| || |||||||||||
S: 1087 GGCTCTGGTCTGTCGCAAATGCAATTCCCTGACCGCCCTGTCACCCCACTGGACAATTTC 1146
Q: 65 ACCACAGCCCTCTGGTATCGCCTTCTTCCCTCCCGCTTGTACCGGTTACCTGCTACTATT 124
|||| ||||| ||||| ||| | || || |||||||||||||| |||||||| |||||
S: 1147 GCCACTGCCCTATGGTACCGCTTGCTCCCTTCCCGCTTGTACCGATTACCTGCCACTATC 1206
Q: 125 CGCAACTTTCAGCTCAAGGCCTTTGTCGACCAACTACGGACACCTCAATACCTACTGCAC 184
|||||||| |||||||| |||||||| || |||||||| || || |||||||| |||||
S: 1207 CGCAACTTCCAGCTCAAAGCCTTTGTTGATCAACTACGTACCCCCCAATACCTGTTGCAC 1266
Q: 185 TTCAAGTTGGACGAGTATCATCTCAGCAGCAATGACAAGTACAGCGATTTCTACCGGAAC 244
||||| || || ||||| || | |||||||| |||||||||||||| |||||||| ||
S: 1267 TTCAAATTAGATGAGTACCACTTGAGCAGCAACGACAAGTACAGCGACTTCTACCGCAAT 1326
Q: 245 GAAGCAAAACAGGCCAGCAGTAAAGACATGCTATCAGCATTTGAGGCCATTTGCTTCGGA 304
||| ||| ||| |||||||| ||||||||| |||| |||||||| || |||||||| ||
S: 1327 GAATCAAGACAAGCCAGCAGCAAAGACATGTTATCGGCATTTGAAGCAATTTGCTTTGGC 1386
Q: 305 GGAGCCCCTGAACTAGAAAAGAAAATCCTTGGTAACCAGAACCCTGCACCCTTCGCCACT 364
|| ||||||||||| |||||||| |||||||| ||| | ||||| ||||| ||||| |||
S: 1387 GGGGCCCCTGAACTTGAAAAGAAGATCCTTGGCAACAACAACCCAGCACCGTTCGCTACT 1446
Q: 365 GTACCCAATCCGCCCAGCCAGACTGCCCTTGGACTAGCCACCATCACTGCCGCGATTGCC 424
|| || |||||||| ||||| || || || ||||| ||||| ||||||||||| ||||||
S: 1447 GTCCCTAATCCGCCGAGCCAAACCGCTCTCGGACTTGCCACTATCACTGCCGCAATTGCC 1506
Q: 425 TTTGTTCTACCAAACCGCGCAGCTCGCTTAGCCCG 459
|| |||| || || ||||| || |||||| ||||
S: 1507 TTCATTCTGCCTAATCGCGCTGCCCGCTTAACCCG 1541
Organism #3: Cryphonectria hypovirus
- Organism #3 / Result 14 next | previous | overview
[Q] contig00486 vs [S] AF188514
Query view (% Id) / 14.62Subj. % Id / 1.76
Align % Id / 80.86
E-val / 1.19e-13
Query Identifier / contig00486
Identifier / AF188514
Total View
Description / Cryphonectria hypovirus 3 isolate CS polyprotein gene, complete cds.
Gene name / empty
- See all subjects mapped to this query
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A part of your query matches a part of this sequence.
Align len= 209 nt, Score= 45, Eval= 1.20e-13, Identity= 80.86%, Similarity= 80.86%
Query len= 1156 nt, pos= 911-1118 nt (fw), Identity query= 14.62%, Alignment coverage query= 17.99%, Nb gaps query= 1
Subject len= 9591 nt, pos= 5591-5799 nt (fw), Identity subject= 1.76%, Alignment coverage subject= 2.18%, Nb gaps subject= 0
Q: 911 ATAGAGTCACCTGAAGCATTCCCAACTGTCAGTCATGCGTTTATTAAAGATGAAGTTCTT 970
|||||||| ||||||||||| || || ||||| |||||||||||||| ||||| ||| |
S: 5591 ATAGAGTCTCCTGAAGCATTTCCGACCGTCAGCCATGCGTTTATTAAGGATGAGGTTTTA 5650
Q: 971 CCCAAATCTTACATTGAACGGGA-AAAATACGAACGATTATAGCCCAAGACCCTCTAAAC 1029
|| |||||||| ||||||| || ||||| || || || || || ||||| ||| | |||
S: 5651 CCAAAATCTTATGTTGAACGTGAGAAAATTCGCACAATCATTGCACAAGATCCTTTGAAC 5710
Q: 1030 TACTACCTATCAATGGCAATTCAAGGTGATAGTGCAAAAAGGTTGGACCCTTCATCGTTC 1089
||||| |||||||||||| |||| || || ||||||||| | ||||| || || |||
S: 5711 TACTATCTATCAATGGCAGTTCAGGGAGACGCTGCAAAAAGACTTGACCCATCTTCATTC 5770
Q: 1090 TCAGCTGTTGGTATATCTCCCTCTCATGG 1118
|| ||||||||| |||||| ||||||||
S: 5771 TCGGCTGTTGGTGTATCTCGATCTCATGG 5799
- Organism #3 / Result 15 next | previous | overview
[Q] contig00761 vs [S] AF188514
Query view (% Id) / 6.09Subj. % Id / 0.84
Align % Id / 82.65
E-val / 1.23e-4
Query Identifier / contig00761
Identifier / AF188514
Total View
Description / Cryphonectria hypovirus 3 isolate CS polyprotein gene, complete cds.
Gene name / empty
- See all subjects mapped to this query
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A part of your query matches a part of this sequence.
Align len= 98 nt, Score= 30, Eval= 1.20e-4, Identity= 82.65%, Similarity= 82.65%
Query len= 1331 nt, pos= 707-804 nt (rv), Identity query= 6.09%, Alignment coverage query= 7.36%, Nb gaps query= 0
Subject len= 9591 nt, pos= 2111-2208 nt (fw), Identity subject= 0.84%, Alignment coverage subject= 1.02%, Nb gaps subject= 0
Q: 707 TCTGTTTTCCCTGATAAACAGGTTTTTGAAGTGTGTCCGGTGCCAAGAGAGGACAACGGC 766
||||| |||||||| ||||| || ||||| |||||||| || ||| | |||||||| ||
S: 2111 TCTGTGTTCCCTGAAAAACAAGTCTTTGAGGTGTGTCCAGTTCCACGCGAGGACAATGGT 2170
Q: 767 GTTTGCCCTGAGTTCTACTTAGCACACTACTTCGAAGA 804
||||| ||||||||||| | | |||||||||| ||||
S: 2171 GTTTGTCCTGAGTTCTATCTTGGACACTACTTCAAAGA 2208
Organism #4: Fusarium poae (FUPO-1)
- Organism #4 / Result 16 next | previous | overview
[Q] contig00474 vs [S] AF047013
Query view (% Id) / 9.71Subj. % Id / 9.85
Align % Id / 86.11
E-val / 2.43e-53
Query Identifier / contig00474
Identifier / AF047013
Total View
Description / Fusarium poae virus 1 RNA2 putative RNA dependent RNA polymerase gene, complete cds.
Gene name / empty
- See all subjects mapped to this query
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A part of your query matches a part of this sequence.
Align len= 252 nt, Score= 112, Eval= 2.40e-53, Identity= 86.11%, Similarity= 86.11%
Query len= 2234 nt, pos= 1641-1892 nt (rv), Identity query= 9.71%, Alignment coverage query= 11.28%, Nb gaps query= 0
Subject len= 2203 nt, pos= 1610-1861 nt (fw), Identity subject= 9.85%, Alignment coverage subject= 11.44%, Nb gaps subject= 0
Q: 1641 TCGATATGGAATGGTCTTATCTAAGACTAAATCCGTTATCACTGTCCTACGACAGCGAAT 1700
||||||||| |||||| |||||||||| ||||| | |||||| ||| ||||| |||
S: 1610 TCGATATGGTATGGTCCTATCTAAGACCAAATCTATAATCACTACCCTTCGACATAAAAT 1669
Q: 1701 CGAAACTCTAGGTTACCAATGCAATTTTGGACACCCCCGCCGCCCCATCGGCAAACTCGT 1760
||||||||| || || || ||||||||||| || |||||||| ||||||||||||||
S: 1670 CGAAACTCTTTCATATCAGTGTAATTTTGGACATCCTCGCCGCCCTATCGGCAAACTCGT 1729
Q: 1761 CGCTCAGCTCTGCTATCCAGAGCGTGGTCCACGACCCAAATACATGTCTGCTCGCGCAGT 1820
||| |||||||||| |||||||||||||||||||||||||||||||| || ||||| ||
S: 1730 CGCACAGCTCTGCTTCCCAGAGCGTGGTCCACGACCCAAATACATGTCAGCACGCGCTGT 1789
Q: 1821 CGGCATGGCCTGGGCCTCGTGTGCTCAAGACAAGACATTCCACGACTTCTGTCGCGATGT 1880
|||||||||||||||||| |||| |||||||| ||||| ||||||||||||||||||||
S: 1790 CGGCATGGCCTGGGCCTCTTGTGGCCAAGACAAAACATTTCACGACTTCTGTCGCGATGT 1849
Q: 1881 CTATTACGAGTT 1892
||| |||||||
S: 1850 GTATCACGAGTT 1861
Organism #5: Gremmeniella abietina
- Organism #5 / Result 17 next | previous | overview
[Q] contig00505 vs [S] AY089993
Query view (% Id) / 40.98Subj. % Id / 4.71
Align % Id / 88.42
E-val / 5.08e-18
Query Identifier / contig00505
Identifier / AY089993
Total View
Description / Gremmeniella abietina RNA virus MS1 putative replicase gene, complete cds.
Gene name / empty
- See all subjects mapped to this query
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A part of your query matches a part of this sequence.
Align len= 95 nt, Score= 51, Eval= 5.10e-18, Identity= 88.42%, Similarity= 88.42%
Query len= 205 nt, pos= 14-108 nt (rv), Identity query= 40.98%, Alignment coverage query= 46.34%, Nb gaps query= 0
Subject len= 1782 nt, pos= 1020-1114 nt (fw), Identity subject= 4.71%, Alignment coverage subject= 5.33%, Nb gaps subject= 0
Q: 14 CGCCAAAAGTGGCGAAACGTTTGGGACGGTATGGTTTGGTACTTTATCAATACACCCATC 73
|||||||||||||| ||||||||||| ||||||||||||||||| ||||| || || |||
S: 1020 CGCCAAAAGTGGCGTAACGTTTGGGATGGTATGGTTTGGTACTTCATCAACACGCCTATC 1079
Q: 74 TTGATGCCAGATGGCCGAATGTTTCGAAAGAGACG 108
|| ||||| || ||||| |||||||| ||||||||
S: 1080 TTAATGCCTGACGGCCGCATGTTTCGCAAGAGACG 1114
Organism #6: Cherry chlorotic
- Organism #6 / Result 18 previous | overview
[Q] contig00444 vs [S] AM181142
Query view (% Id) / 2.69Subj. % Id / 3.12
Align % Id / 82.22
E-val / 1.64e-9
Query Identifier / contig00444
Identifier / AM181142
Total View
Description / Cherry chlorotic rusty spot associated totiviral-like dsRNA 4 partial RdRp gene for putative RNA-dependent RNA polymerase, genomic RNA, from Campania, Italy.
Gene name / RdRp
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A part of your query matches a part of this sequence.
Align len= 135 nt, Score= 39, Eval= 1.60e-9, Identity= 82.22%, Similarity= 82.22%
Query len= 4119 nt, pos= 3134-3268 nt (rv), Identity query= 2.69%, Alignment coverage query= 3.28%, Nb gaps query= 0
Subject len= 3557 nt, pos= 3259-3393 nt (fw), Identity subject= 3.12%, Alignment coverage subject= 3.8%, Nb gaps subject= 0
Q: 3134 ATAGGATACACCCTCCAACTGGGAAAGTGCTTTTTGCAAGGAGTTAGAGAGTTCCTCAGA 3193
||||||||||| || || |||| |||||||| ||||| || || ||||||||||| |
S: 3259 ATAGGATACACTCTGCAGTTGGGGAAGTGCTTCTTGCAGGGGGTGAGAGAGTTCCTGCGG 3318
Q: 3194 ATATCACACAAGAACGCAAACACGTCACAATATCTAGCCAGGTCGGCAGCGACGGCAGTA 3253
||||| |||||||| || ||||| || ||||| |||| ||||| |||||||| ||| ||
S: 3319 ATATCGCACAAGAATGCGAACACCTCTCAATACTTAGCAAGGTCAGCAGCGACTGCAATA 3378
Q: 3254 CACGGCAGGATAGAA 3268
|| ||||||||||||
S: 3379 CATGGCAGGATAGAA 3393