ESM Table 6. Genome Wide Association Analysis for Panicle Traits and Yield Related Traits

ESM Table 6. Genome wide association analysis for panicle traits and yield related traits of 107 sorghum accessions.

[Year.2010] / [Year.2011]
No. / Trait / Marker Index / Chromosome / Marker / -Log 10
(P-value) / R2 (%) / -Log 10
(P-value) / R2 (%)
1 / Rac / M28 / 2 / Xtxp84 / 8.69 / 0.56 / 1.02 / 3.72
Rac / M68 / 9 / Xtxp10 / 4.29 / 20.24 / 1.12 / 6.20
Rac / M90 / 6 / Xtxp95 / 2.19 / 11.96 / 1.55 / 12.31
2 / PanL / M05 / 1 / SbAGF06 / 3.59 / 28.01 / 1.29 / 15.83
PanL / M09 / 1 / Xtxp75 / 2.28 / 22.25 / 0.59 / 5.47
PanL / M26 / 2 / Xtxp7 / 2.72 / 15.63 / 1.82 / 8.5
PanL / M33 / 2 / Xtxp96 / 2 / 13.3 / 0.48 / 4.73
PanL / M36 / 2 / Xtxp211 / 2.66 / 17.65 / 0.44 / 4.22
PanL / M45 / 3 / Xtxp228 / 2.32 / 11.93 / 0.12 / 0.74
PanL / M50 / 3 / Xtxp336 / 3 / 9.25 / 0.20 / 0.93
PanL / M56 / 4 / Xtxp12 / 2.62 / 18.81 / 1.61 / 14.04
PanL / M59 / 4 / Xtxp27 / 2.07 / 14.03 / 0.47 / 5.01
PanL / M68 / 9 / Xtxp10 / 5.06 / 22.84 / 2.54 / 8.95
PanL / M84 / 8 / Xtxp321 / 1.19 / 12.09 / 2.31 / 18.13
3 / TotN / M11 / 1 / Xtxp229 / 2 / 5.03 / 0.25 / 0.95
TotN / M17 / 1 / Xtxp340 / 6.02 / 0.89 / 0.51 / 5.16
TotN / M41 / 2 / Xtxp315 / 2.62 / 35.9 / 2.48 / 1.19
TotN / M56 / 4 / Xtxp12 / 3.07 / 21.38 / 0.80 / 7.85
4 / TotBr / M11 / 1 / Xtxp229 / 2.33 / 10.29 / 0.55 / 1.80
TotBr / M18 / 1 / Xtxp37 / 1.07 / 9.36 / 3.78 / 19.05
TotBr / M19 / 1 / Xtxp43 / 0.29 / 5.73 / 2.96 / 22.18
TotBr / M25 / 2 / Xtxp4 / 2.55 / 37.73 / 0.1 / 6.38
TotBr / M41 / 2 / Xtxp315 / 0.29 / 11.51 / 6.45 / 53.52
TotBr / M47 / 3 / Xtxp31 / 2.04 / 17.38 / 0.14 / 2.31
TotBr / M66 / 7 / Xtx40 / 0.39 / 2.50 / 3.61 / 13.79
TotBr / M82 / 8 / SbAGA01 / 1.5 / 14.99 / 3.19 / 14.92
TotBr / M55 / 4 / Xtxp212 / 3.2 / 16.41 / 0.23 / 0.02

MODELING ASSOCIATION : The Mixed Linear Model (Q+K), -Log10 (P) values = 1.5 as threshold value (threshold level corresponds to a test at the 0.05 level of significant, respectively), Legend for table: The makers in bold and underline are QTLs identified in both years (same QTLs between two different growing seasons). Legend for trait: Rac: rachis length, PanL: panicle length, MaxLBZ: maximum length of primary branch zone, TotN: total node along rachis, TotBr: total branch per panicle, PanD: panicle diameter, PanW: panicle width, PanS: panicle shape, PanT: panicle type, GWP: total grain weight per panicle.

ESM Table 6.(continued)

[Year.2010] / [Year.2011]
No. / Trait / Marker Index / Chromosome / Marker / -Log 10 (P-value) / R2 (%) / -Log 10 (P-value) / R2 (%)
5 / MaxLBZ / M07 / 1 / Xtxp32 / 2.03 / 12.91 / 0.23 / 4.13
MaxLBZ / M27 / 2 / Xtxp50 / 4.88 / 23.68 / 0.87 / 5.81
MaxLBZ / M39 / 2 / Xtxp297 / 4.23 / 28.85 / 0.78 / 8.45
MaxLBZ / M56 / 4 / Xtxp12 / 2.0 / 16.23 / 1.95 / 41.2
MaxLBZ / M89 / 6 / Xtxp274 / 3.22 / 0.73 / 0.34 / 5.02
MaxLBZ / M84 / 8 / Xtxp321 / 2.04 / 17.26 / 0.36 / 5.02
MaxLBZ / M68 / 9 / Xtxp10 / 7.63 / 0.69 / 4.94 / 19.91
6 / PanD / M05 / 1 / SbAGF06 / 0.15 / 6.09 / 3.02 / 25.75
PanD / M17 / 1 / Xtxp340 / 2.11 / 15.81 / 0.57 / 7.18
PanD / M29 / 2 / Xtxp8 / 2.17 / 17.38 / 1.58 / 16.89
PanD / M32 / 2 / Xtxp25 / 10.37 / 45.57 / 0.89 / 14.93
PanD / M52 / 3 / Xtxp266 / 2.46 / 7.99 / 0.03 / 0.018
PanD / M56 / 4 / Xtxp12 / 2.23 / 12.53 / 0.63 / 12.73
PanD / M96 / 5 / Xtxp14 / 0.25 / 3.35 / 2.49 / 15.92
PanD / M90 / 6 / Xtxp95 / 2.04 / 15.99 / 0.5 / 6.65
7 / PanW / M14 / 1 / Xtp302 / 1.74 / 13.54 / 1.49 / 9.19
PanW / M045 / 3 / Xtxp228 / 1.8 / 9.88 / 5.06 / 0.45
PanW / M095 / 5 / SbKAFGK1 / 0.07 / 3.66 / 2.19 / 41.8
8 / PanS / M015 / 1 / Xtxp316 / 1.68 / 16.37 / 1.65 / 16.07
PanS / M098 / 5 / Xtxp23 / 1.47 / 8.82 / 1.48 / 8.89
9 / PanT / M14 / 1 / Xtxp302 / 2.39 / 7.80 / 1.99 / 7.50
PanT / M89 / 6 / Xtxp274 / 1.5 / 14.73 / 1.50 / 13.95
PanT / M73 / 10 / PepC / 1.33 / 9.06 / 1.50 / 9.50
10 / GWP / M22 / 2 / Xtxp201 / 2.01 / 9.32 / 0.1 / 0.53
GWP / M55 / 4 / Xtxp212 / 2.15 / 9.30 / 1.89 / 2.98

MODELING ASSOCIATION : The Mixed Linear Model (Q+K), -Log10 (P) values = 1.5 as threshold value (threshold level corresponds to a test at the 0.05 level of significant, respectively),Legend for table: The makers in bold and underline are QTLs identified in both years (same QTLs between two different growing seasons). Legend for trait: Rac: rachis length, PanL: panicle length, MaxLBZ: maximum length of primary branch zone, TotN: total node along rachis, TotBr: total branch per panicle, PanD: panicle diameter, PanW: panicle width, PanS: panicle shape, PanT: panicle type, GWP: total grain weight per panicle.