Supplementary File 1J List of Genes Found to Be Significantly Downregulated from Blastula

Supplementary file 1j List of genes found to be significantly downregulated from blastula to gastrula embryos in Atlantic cod (Gadus morhua).

Contig / Annotation / E-value / Score / Fold change / Q-value
CL972Contig1 / 0 / 0 / 0 / 258.92 / 0.000
lccoc-16i02.fp1_b1.ab1 / 0 / 0 / 0 / 234.92 / 0.000
GmA100602_ENSGAUG00000014014 / PREDICTED: hypothetical protein LOC559540 [Danio rerio] / 9.24E-21 / 103.99 / 185.85 / 0.000
GmA100602_ENSGAUG00000019837 / Serine/threonine-protein kinase mos OS=Xenopus laevis GN=mos PE=2 SV=1 / 3.26E-80 / 298.901 / 183.33 / 0.000
lccot-2j04.fp1_b1.ab1 / 0 / 0 / 0 / 172.46 / 0.000
CL889Contig1 / 0 / 0 / 0 / 168.14 / 0.000
lccot-2p07.fp1_b1.ab1 / 0 / 0 / 0 / 163.75 / 0.000
lccoc-11f19.fp1_b1.ab1 / 0 / 0 / 0 / 160.08 / 0.000
CL572Contig1 / 0 / 0 / 0 / 150.09 / 0.000
GmA100602_ENSGAUG00000012752 / Rac GTPase-activating protein 1 OS=Homo sapiens GN=RACGAP1 PE=1 SV=1 / 5.08E-120 / 432.18 / 149.43 / 0.000
GmA100602_ENSGAUG00000000115 / P43 5S RNA-binding protein OS=Xenopus borealis PE=2 SV=1 / 7.38E-62 / 238.039 / 148.32 / 0.000
GmA100602_ENSGAUG00000006474 / Syntabulin OS=Homo sapiens GN=SYBU PE=1 SV=2 / 7.21E-88 / 325.479 / 147.29 / 0.000
lccot-17c06.fp1_b1.ab1 / 0 / 0 / 0 / 144.50 / 0.000
GmA100602_ENSGAUG00000010939 / Arf-GAP with dual PH domain-containing protein 1 OS=Homo sapiens GN=ADAP1 PE=1 SV=2 / 3.39E-166 / 584.719 / 141.73 / 0.000
lccob-8p13.fp0_b1.ab1 / 0 / 0 / 0 / 141.54 / 0.000
lccoc-3h17.fp1_b1.ab1 / 0 / 0 / 0 / 131.45 / 0.000
lccoc-10m16.fp1_b1.ab1 / 0 / 0 / 0 / 131.43 / 0.000
GmA100602_ENSGAUG00000016250 / LIM/homeobox protein Lhx8 OS=Homo sapiens GN=LHX8 PE=2 SV=2 / 2.89E-99 / 361.688 / 125.36 / 0.000
lccot-18b02.fp1_b1.ab1 / 0 / 0 / 0 / 120.44 / 0.000
CL884Contig1 / 0 / 0 / 0 / 120.19 / 0.000
lccoc-19l18.fp1_b1.ab1 / 0 / 0 / 0 / 118.71 / 0.000
GmA100602_ENSGAUG00000016652 / filamin A-interacting protein 1-like [Equus caballus] / 0 / 661.759 / 108.11 / 0.000
GmA100602_ENSGAUG00000011295 / E3 SUMO-protein ligase CBX4 OS=Homo sapiens GN=CBX4 PE=1 SV=3 / 1.63E-88 / 327.405 / 103.26 / 0.000
GmA100602_ENSGAUG00000003044 / Histone RNA hairpin-binding protein OS=Mus musculus GN=Slbp PE=1 SV=1 / 3.56E-28 / 125.561 / 100.48 / 0.000
CL672Contig1 / 0 / 0 / 0 / 100.03 / 0.000
GmA100602_ENSGAUG00000013071 / Chromobox protein homolog 8 OS=Mus musculus GN=Cbx8 PE=1 SV=1 / 1.43E-59 / 230.335 / 99.94 / 0.000
CL808Contig1 / 0 / 0 / 0 / 98.72 / 0.000
GmA100602_ENSGAUG00000011624 / Microtubule-associated proteins 1A/1B light chain 3C OS=Homo sapiens GN=MAP1LC3C PE=1 SV=1 / 1.64E-45 / 181.03 / 90.85 / 0.001
lccoc-3e17.fp1_b1.ab1 / 0 / 0 / 0 / 87.19 / 0.001
GmA100602_ENSGAUG00000005466 / Bone morphogenetic protein 5 OS=Mus musculus GN=Bmp5 PE=2 SV=1 / 3.42E-144 / 511.531 / 85.90 / 0.001
lccob-18d18.fp0_b1.ab1 / 0 / 0 / 0 / 79.98 / 0.001
CL651Contig1 / 0 / 0 / 0 / 77.37 / 0.001
lccoc-17d21.fp1_b1.ab1 / 0 / 0 / 0 / 77.31 / 0.001
CL1Contig41 / 0 / 0 / 0 / 75.73 / 0.001
lccob-2o20.fp0_b1.ab1 / 0 / 0 / 0 / 75.58 / 0.001
lccoc-13a09.fp1_b1.ab1 / 0 / 0 / 0 / 73.44 / 0.001
CL479Contig1 / 0 / 0 / 0 / 73.14 / 0.001
GmA100602_ENSGAUG00000005666 / Protein PAT1 homolog 2 OS=Xenopus laevis GN=patl2 PE=1 SV=1 / 1.48E-88 / 327.02 / 72.91 / 0.001
GmA100602_ENSGAUG00000019577 / Ras-related protein Rab-33B OS=Mus musculus GN=Rab33b PE=1 SV=1 / 2.24E-18 / 90.8929 / 72.78 / 0.001
GmA100602_ENSGAUG00000005579 / Growth/differentiation factor 9 OS=Capra hircus GN=GDF9 PE=3 SV=1 / 1.89E-61 / 236.884 / 67.57 / 0.002
lccoc-4l20.fp1_b1.ab1 / 0 / 0 / 0 / 66.00 / 0.001
GmA100602_ENSGAUG00000015159 / Sperm acrosome membrane-associated protein 4 OS=Bos taurus GN=SPACA4 PE=2 SV=1 / 4.40E-06 / 50.0618 / 65.50 / 0.001
GmA100602_ENSGAUG00000008826 / unnamed protein product [Tetraodon nigroviridis] / 9.98E-38 / 159.844 / 64.03 / 0.001
GmA100602_ENSGAUG00000009304 / Tudor and KH domain-containing protein OS=Mus musculus GN=Tdrkh PE=1 SV=1 / 7.99E-96 / 351.673 / 63.42 / 0.001
lccot-4h05.fp1_b1.ab1 / 0 / 0 / 0 / 61.69 / 0.003
CL370Contig1 / makorin, ring finger protein, 4 [Danio rerio] / 7.32E-09 / 65.0846 / 60.69 / 0.003
GmA100602_ENSGAUG00000011305 / Chromobox protein homolog 8 OS=Homo sapiens GN=CBX8 PE=1 SV=3 / 6.90E-36 / 151.754 / 60.44 / 0.003
GmA100602_ENSGAUG00000009017 / Dickkopf-related protein 3 OS=Homo sapiens GN=DKK3 PE=1 SV=2 / 7.83E-32 / 135.576 / 60.36 / 0.002
GmA100602_ENSGAUG00000007605 / 0 / 0 / 0 / 60.26 / 0.002
GmA100602_ENSGAUG00000011420 / 0 / 0 / 0 / 58.09 / 0.003
GmA100602_ENSGAUG00000012486 / Coiled-coil domain-containing protein 149-B OS=Danio rerio GN=ccdc149b PE=2 SV=1 / 4.56E-112 / 404.06 / 57.99 / 0.003
GmA100602_ENSGAUG00000005730 / Gamma-aminobutyric acid receptor subunit alpha-2 OS=Homo sapiens GN=GABRA2 PE=2 SV=2 / 1.09E-124 / 447.203 / 57.34 / 0.002
GmA100602_ENSGAUG00000007579 / unnamed protein product [Mus musculus] / 0 / 691.034 / 56.76 / 0.003
GmA100602_ENSGAUG00000017829 / CAP-Gly domain-containing linker protein 1 OS=Gallus gallus GN=CLIP1 PE=2 SV=1 / 1.74E-161 / 571.237 / 56.55 / 0.003
GmA100602_ENSGAUG00000016817 / Lamin-L(III) OS=Xenopus laevis PE=2 SV=2 / 7.41E-96 / 351.673 / 54.93 / 0.003
lccob-6e22.fp0_b1.ab1 / G2/mitotic-specific cyclin-B2 OS=Oryzias curvinotus GN=ccnb2 PE=2 SV=1 / 8.28E-12 / 69.3218 / 54.68 / 0.004
lccoc-3b09.fp1_b1.ab1 / 0 / 0 / 0 / 54.47 / 0.003
GmA100602_ENSGAUG00000020005 / 0 / 0 / 0 / 53.82 / 0.003
lccot-6j24.fp1_b1.ab1 / PREDICTED: similar to F57G4.9 [Hydra magnipapillata] / 2.45E-27 / 126.716 / 53.43 / 0.003
GmA100602_ENSGAUG00000008221 / Probable E3 ubiquitin-protein ligase makorin-1 OS=Seriola quinqueradiata GN=mkrn1 PE=2 SV=1 / 3.97E-24 / 111.309 / 53.31 / 0.005
GmA100602_ENSGAUG00000006210 / E3 ubiquitin-protein ligase NEURL3 OS=Homo sapiens GN=NEURL3 PE=2 SV=2 / 6.80E-29 / 127.872 / 53.03 / 0.002
GmA100602_ENSGAUG00000011853 / Protein HGV2 OS=Halocynthia roretzi GN=HGV2 PE=2 SV=1 / 1.00E-43 / 177.948 / 52.09 / 0.003
GmA100602_ENSGAUG00000004886 / TATA box-binding protein-like protein 2 OS=Takifugu rubripes GN=tbpl2 PE=2 SV=1 / 1.24E-101 / 369.777 / 51.47 / 0.002
GmA100602_ENSGAUG00000016780 / ADP-ribosylation factor-like protein 8B-A OS=Danio rerio GN=arl8ba PE=2 SV=1 / 2.18E-78 / 290.426 / 51.29 / 0.003
GmA100602_ENSGAUG00000006968 / Ras-related protein Rab-44 OS=Mus musculus GN=Rab44 PE=2 SV=1 / 1.18E-44 / 179.489 / 50.96 / 0.003
GmA100602_ENSGAUG00000012755 / Low density lipoprotein receptor adapter protein 1 OS=Mus musculus GN=Ldlrap1 PE=1 SV=2 / 6.10E-83 / 307.375 / 50.85 / 0.003
GmA100602_ENSGAUG00000000936 / Cyclin-dependent kinase inhibitor 3 OS=Sus scrofa GN=CDKN3 PE=2 SV=1 / 6.60E-65 / 246.899 / 50.71 / 0.004
lccob-16e4.fp0_b1.ab1 / 0 / 0 / 0 / 50.66 / 0.004
lccoc-1j03.fp1_b1.ab1 / 0 / 0 / 0 / 49.29 / 0.005
lccot-11a10.fp1_b1.ab1 / 0 / 0 / 0 / 48.62 / 0.003
lccob-4d5.fp0_b1.ab1 / 0 / 0 / 0 / 47.86 / 0.003
CL122Contig2 / 0 / 0 / 0 / 47.85 / 0.005
GmA100602_ENSGAUG00000002404 / Zinc finger protein 706 OS=Gallus gallus GN=ZNF706 PE=4 SV=1 / 8.02E-32 / 135.576 / 47.69 / 0.005
lccoc-17m19.fp1_b1.ab1 / 0 / 0 / 0 / 47.51 / 0.005
GmA100602_ENSGAUG00000008448 / G2/mitotic-specific cyclin-B2 OS=Oryzias latipes GN=ccnb2 PE=2 SV=1 / 5.79E-124 / 444.506 / 47.45 / 0.006
CL1290Contig1 / 0 / 0 / 0 / 47.33 / 0.004
GmA100602_ENSGAUG00000016943 / Forkhead box protein H1 OS=Danio rerio GN=foxh1 PE=1 SV=1 / 3.56E-10 / 63.929 / 46.65 / 0.005
lccoc-20c02.fp1_b1.ab1 / 0 / 0 / 0 / 46.27 / 0.004
GmA100602_ENSGAUG00000019002 / Ankyrin repeat domain-containing protein 29 OS=Danio rerio GN=ankrd29 PE=2 SV=1 / 6.40E-119 / 427.172 / 46.06 / 0.003
GmA100602_ENSGAUG00000011385 / Anosmin-1 OS=Gallus gallus GN=KAL1 PE=2 SV=2 / 1.03E-140 / 501.13 / 45.91 / 0.003
GmA100602_ENSGAUG00000001234 / Proteinase-activated receptor 2 OS=Mus musculus GN=F2rl1 PE=2 SV=1 / 8.26E-106 / 384.03 / 45.67 / 0.006
lccob-20b13.fp0_b1.ab1 / 0 / 0 / 0 / 45.35 / 0.003
GmA100602_ENSGAUG00000008098 / Factor in the germline alpha OS=Mus musculus GN=Figla PE=2 SV=1 / 1.46E-14 / 79.337 / 44.35 / 0.005
lccob-12b16.fp0_b1.ab1 / 0 / 0 / 0 / 43.66 / 0.006
GmA100602_ENSGAUG00000017837 / Ubiquitin carboxyl-terminal hydrolase CYLD OS=Homo sapiens GN=CYLD PE=1 SV=1 / 1.96E-111 / 403.29 / 43.63 / 0.005
GmA100602_ENSGAUG00000016241 / ATP-binding cassette sub-family G member 2 OS=Rattus norvegicus GN=Abcg2 PE=1 SV=1 / 0 / 635.18 / 42.04 / 0.008
GmA100602_ENSGAUG00000007003 / Kelch domain-containing protein 10 OS=Bos taurus GN=KLHDC10 PE=2 SV=1 / 7.14E-170 / 597.045 / 41.79 / 0.006
lccot-10n04.fp1_b1.ab1 / 0 / 0 / 0 / 41.61 / 0.008
GmA100602_ENSGAUG00000017893 / Homeobox protein Hox-C6a OS=Takifugu rubripes GN=hoxc6a PE=3 SV=1 / 1.43E-114 / 412.149 / 40.63 / 0.008
CL757Contig1 / 0 / 0 / 0 / 40.26 / 0.007
GmA100602_ENSGAUG00000018984 / RUN and SH3 domain-containing protein 1 OS=Homo sapiens GN=RUSC1 PE=1 SV=3 / 8.25E-18 / 90.1225 / 39.82 / 0.005
GmA100602_ENSGAUG00000010751 / Urokinase-type plasminogen activator OS=Gallus gallus GN=PLAU PE=2 SV=1 / 2.84E-83 / 309.301 / 39.27 / 0.004
GmA100602_ENSGAUG00000011994 / Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1 / 8.11E-91 / 333.183 / 39.25 / 0.005
GmA100602_ENSGAUG00000019874 / RING finger protein 183 OS=Bos taurus GN=RNF183 PE=2 SV=1 / 1.57E-11 / 68.1662 / 39.08 / 0.006
GmA100602_ENSGAUG00000012320 / Neuferricin OS=Danio rerio GN=cyb5d2 PE=3 SV=1 / 1.99E-75 / 282.337 / 38.55 / 0.010
lccoc-18o04.fp1_b1.ab1 / 0 / 0 / 0 / 38.50 / 0.006
GmA100602_ENSGAUG00000006070 / Cyclin-dependent kinase 14 OS=Dasypus novemcinctus GN=CDK14 PE=3 SV=1 / 0 / 635.18 / 38.46 / 0.007
CL1257Contig1 / 0 / 0 / 0 / 38.26 / 0.006
GmA100602_ENSGAUG00000004926 / Cytospin-A OS=Danio rerio GN=specc1la PE=2 SV=2 / 3.35E-20 / 97.4413 / 38.24 / 0.005
lccot-18c10.fp1_b1.ab1 / 0 / 0 / 0 / 37.83 / 0.005
CL967Contig1 / 0 / 0 / 0 / 37.75 / 0.005
lccot-13i24.fp1_b1.ab1 / 0 / 0 / 0 / 37.70 / 0.012
GmA100602_ENSGAUG00000020459 / snRNA-activating protein complex subunit 1 OS=Homo sapiens GN=SNAPC1 PE=1 SV=1 / 4.37E-48 / 191.815 / 37.53 / 0.010
GmA100602_ENSGAUG00000003945 / Interferon regulatory factor 8 OS=Gallus gallus GN=IRF8 PE=2 SV=1 / 4.39E-103 / 375.17 / 37.39 / 0.006
GmA100602_ENSGAUG00000011948 / ATPase family AAA domain-containing protein 5 OS=Mus musculus GN=Atad5 PE=1 SV=1 / 9.87E-73 / 274.248 / 37.26 / 0.005
CL1030Contig1 / hypothetical protein LOC561391 [Danio rerio] / 0.009643 / 43.8986 / 36.91 / 0.006
GmA100602_ENSGAUG00000001475 / Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3 / 4.54E-41 / 168.318 / 36.87 / 0.006
CL1050Contig1 / 0 / 0 / 0 / 36.72 / 0.008
lccoc-12b14.fp1_b1.ab1 / 0 / 0 / 0 / 36.42 / 0.010
GmA100602_ENSGAUG00000008790 / Otopetrin-2 OS=Mus musculus GN=Otop2 PE=2 SV=1 / 1.58E-59 / 229.95 / 36.37 / 0.005
lccob-10o16.fp0_b1.ab1 / 0 / 0 / 0 / 36.28 / 0.012
lccot-5h21.fp1_b1.ab1 / 0 / 0 / 0 / 36.19 / 0.010
GmA100602_ENSGAUG00000017605 / Cerebellar degeneration-related protein 2-like OS=Homo sapiens GN=CDR2L PE=1 SV=2 / 1.30E-47 / 191.045 / 35.95 / 0.012
lccot-15h10.fp1_b1.ab1 / 0 / 0 / 0 / 35.90 / 0.006
GmA100602_ENSGAUG00000013529 / Tumor necrosis factor alpha-induced protein 8-like protein 1 OS=Danio rerio GN=tnfaip8l1 PE=2 SV=1 / 1.78E-89 / 328.176 / 35.30 / 0.012
GmA100602_ENSGAUG00000000160 / 3-keto-steroid reductase OS=Mus musculus GN=Hsd17b7 PE=1 SV=1 / 4.79E-70 / 263.848 / 35.06 / 0.007
GmA100602_ENSGAUG00000001122 / Cyclin-A1-2 OS=Arabidopsis thaliana GN=CYCA1-2 PE=1 SV=2 / 1.24E-20 / 99.7525 / 34.95 / 0.007
lccoc-5i04.fp1_b1.ab1 / 0 / 0 / 0 / 34.90 / 0.005
CL821Contig1 / 0 / 0 / 0 / 34.54 / 0.013
lccot-9j05.fp1_b1.ab1 / 0 / 0 / 0 / 34.44 / 0.011
GmA100602_ENSGAUG00000006279 / Rho GTPase-activating protein 18 OS=Homo sapiens GN=ARHGAP18 PE=1 SV=3 / 5.48E-145 / 514.998 / 34.20 / 0.013
GmA100602_ENSGAUG00000000252 / PREDICTED: similar to RasGEF domain family, member 1C isoform 1 [Canis familiaris] / 0 / 643.269 / 33.57 / 0.012
GmA100602_ENSGAUG00000004939 / Cytochrome c oxidase copper chaperone OS=Mus musculus GN=Cox17 PE=2 SV=2 / 9.17E-20 / 95.5153 / 33.52 / 0.005
lccot-13h18.fp1_b1.ab1 / 0 / 0 / 0 / 33.44 / 0.012
GmA100602_ENSGAUG00000018733 / Guanine nucleotide-binding protein G(o) subunit alpha OS=Geodia cydonium PE=2 SV=3 / 1.04E-79 / 297.36 / 33.32 / 0.007
GmA100602_ENSGAUG00000009698 / Tryptase gamma OS=Homo sapiens GN=TPSG1 PE=2 SV=3 / 5.91E-28 / 124.79 / 33.23 / 0.009
GmA100602_ENSGAUG00000007930 / Prostacyclin synthase OS=Mus musculus GN=Ptgis PE=2 SV=1 / 1.47E-129 / 463.381 / 32.84 / 0.005
lccoc-9i14.fp1_b1.ab1 / 0 / 0 / 0 / 32.83 / 0.005
lccob-13n15.fp0_b1.ab1 / 0 / 0 / 0 / 32.74 / 0.012
lccot-11o06.fp1_b1.ab1 / Sperm acrosome membrane-associated protein 4 OS=Bos taurus GN=SPACA4 PE=2 SV=1 / 0.001065 / 43.8986 / 32.71 / 0.008
lccoc-16l12.fp1_b1.ab1 / 0 / 0 / 0 / 32.65 / 0.010
GmA100602_ENSGAUG00000012765 / Tudor domain-containing protein 6 OS=Homo sapiens GN=TDRD6 PE=2 SV=2 / 1.74E-21 / 103.99 / 32.24 / 0.014
GmA100602_ENSGAUG00000017115 / Protein LSM14 homolog B OS=Xenopus tropicalis GN=lsm14b PE=2 SV=1 / 1.62E-76 / 286.574 / 32.22 / 0.014
lccoc-9e23.fp1_b1.ab1 / 0 / 0 / 0 / 32.08 / 0.014
GmA100602_ENSGAUG00000001432 / Rho GTPase-activating protein 11B OS=Homo sapiens GN=ARHGAP11B PE=1 SV=1 / 6.42E-44 / 177.178 / 31.96 / 0.005
lccob-16f9.fp0_b1.ab1 / 0 / 0 / 0 / 31.74 / 0.015
GmA100602_ENSGAUG00000013220 / PREDICTED: ilvB (bacterial acetolactate synthase)-like isoform 1 [Pan troglodytes] / 0 / 651.358 / 31.62 / 0.012
GmA100602_ENSGAUG00000005195 / Borealin-2 OS=Danio rerio GN=cdca9 PE=2 SV=1 / 9.97E-19 / 92.0485 / 31.60 / 0.009
GmA100602_ENSGAUG00000018857 / Delta(14)-sterol reductase OS=Homo sapiens GN=TM7SF2 PE=2 SV=3 / 4.43E-133 / 474.937 / 31.53 / 0.009
GmA100602_ENSGAUG00000004563 / Hypoxanthine-guanine phosphoribosyltransferase OS=Gallus gallus GN=HPRT1 PE=2 SV=1 / 1.41E-94 / 345.51 / 31.48 / 0.011
GmA100602_ENSGAUG00000007396 / Sesquipedalian-1 OS=Homo sapiens GN=FAM109A PE=1 SV=1 / 2.04E-55 / 215.698 / 31.48 / 0.012
GmA100602_ENSGAUG00000002573 / Protein LSM14 homolog B OS=Xenopus tropicalis GN=lsm14b PE=2 SV=1 / 1.02E-63 / 244.202 / 31.43 / 0.012
GmA100602_ENSGAUG00000006153 / Cyclin-A1 OS=Carassius auratus GN=ccna1 PE=2 SV=1 / 3.65E-91 / 335.495 / 31.25 / 0.018
GmA100602_ENSGAUG00000013886 / Plasminogen activator inhibitor 1 OS=Homo sapiens GN=SERPINE1 PE=1 SV=1 / 8.04E-80 / 297.745 / 30.86 / 0.013
GmA100602_ENSGAUG00000006620 / carnitine acetyltransferase [Mus musculus] / 0 / 665.226 / 30.67 / 0.017
GmA100602_ENSGAUG00000004052 / Interleukin-11 OS=Rattus norvegicus GN=Il11 PE=2 SV=1 / 1.17E-07 / 56.6102 / 30.66 / 0.012
GmA100602_ENSGAUG00000013096 / ras and EF-hand domain-containing protein [Danio rerio] / 0 / 652.514 / 30.51 / 0.012
GmA100602_ENSGAUG00000010434 / Protein phosphatase 1 regulatory subunit 3C-B OS=Danio rerio GN=ppp1r3cb PE=2 SV=1 / 2.86E-78 / 292.352 / 30.41 / 0.019
GmA100602_ENSGAUG00000004041 / Basic immunoglobulin-like variable motif-containing protein OS=Xenopus tropicalis GN=bivm PE=2 SV=1 / 2.24E-155 / 549.28 / 30.01 / 0.012