Archain 1/ Coatomer Protein Delta-COP

Online Resource 5: Significant (p≤0.05) FC differences of genes over- (positive values) and underrepresented(negative values) in gills of BORN trout compared to import trout as listed in the manuscript.

Accessioncode
(GenBank, TIGR) / Gene symbol / Gene product / FC / Molecular function/
subchapter in the manuscript
8°C / 23°C
BT059249 / ACSL4 / Acyl-CoA synthetase long-chain family member 4 /

-5.49

/ Lipid metabolism
BT058991 / ACTN1 / Actinin, alpha 1 /

-4.31

/ Cytoskeletal structure and organization
BT048822 / APOA4 / Apolipoprotein A-IV /

-4.61

/ Lipid metabolism
NM_001140175 / APOL3 / Apolipoprotein L, 3 /

-3.21

/ Lipid metabolism

NM_001140104

/

ARCN1

/

Archain 1/ coatomer protein delta-COP

/

9.18

/ Vesicular transport

TC109511

/

ATG4B

/

Autophagy-related protein 4B

/

8.00

/ Protein degradation
BT048507 / ATP5I / Mitoch. ATP synthase, F0 compl. subunit E /

-3.89

/

-4.95

/ Energy metabolism
NM_001140346 / BIRC5 / Baculoviral IAP repeat-containing protein 5 /

-5.84

/

-5.90

/ Cell death and survival

TC71070

/

BMP4

/

Bone morphogenetic protein 4

/

15.42

/

Cell death and survival

DN048074

/

C1R

/

Complement component 1, r subcomponent

/

4.35

/ Immune activation: complement
EG801265 / CAPNS1 / Calpain, small subunit 1 /

-12.55

/ Ion-binding

GO058138

/

CHIA

/

Acidic chitinase

/

11.18

/

3.59

/

Induction of chemotaxis

NM_001140401 / CNN2 / Calponin 2 /

-16.28

/

-14.19

/ Cytoskeletal structure and organization
DW562855 / CRAT / Carnitine O-acetyltransferase /

-3.07

/ Lipid metabolism

BT059481

/

CREB

/

cAMP responsive element-binding protein

/

11.87

/

Cold response

EG768324

/

CTSL1

/

Cathepsin L1

/

4.05

/

6.92

/ Protein degradation

TC84415

/

CUL4A

/

Cullin 4A

/

4.24

/ Protein degradation
TC81441 / DNASE2B / Lysosomaldeoxyribonuclease IIB /

3.51

/ Cell death and survival

DY726243

/

DST

/

Dystonin

/

4.27

/

3.57

/ Cytoskeletal structure and organization
NM_001140142 / EHD3 / EH domain-containing protein 3 /

-5.60

/ Vesicular transport
CB502496 / FADS6 / Fatty acid desaturase domain family, member 6 /

-3.89

/ Lipid metabolism
NM_001123730 / FYXD12a / FXYD domain-containing ion transport regulator 12a /

-5.90

/ Ion channel activity
BT059541 / GM2A / GM2 ganglioside activator /

-8.23

/

-3.95

/ Lipid metabolism

EG895611

/

MARCH2

/

Membrane-associated ring finger 2, E3 ubiquitin protein ligase

/

4.66

/ Protein degradation
EG862929 / MYO1B / Myosin IB /

-3.63

/

-26.21

/ Cytoskeletal structure and organization

DW339216

/

NDUFA4L2

/

NADH dehydrogenase 1α subcompl. 4-like 2

/

28.04

/

8.52

/

Energy metabolism

DW572164 / NECAP1 / NECAP endocytosis associated 1 /

-3.85

/ Vesicular transport
NM_001141504 / OCIAD2 / OCIA domain-containing protein 2 /

-3.41

/

-8.07

/ unknown
BT046051 / PFN2 / Profilin 2 /

-3.23

/

-7.27

/ Cytoskeletal structure and organization
NM_001139731 / PSMD13 / Proteasome 26S subunit, non-ATPase, 13 /

3.39

/ Protein degradation
BT059445 / PVALB / Parvalbumin /

3.05

/

3.22

/ Ion-excretion

CB512141

/

RAB37

/

RAB37, member of RAS oncogene family

/

7.12

/ Vesicular transport
TC91953 / RABGAP1L / RAB GTPase activating protein 1-like /

-4.67

/

-3.25

/ Protein degradation
NM_001123689 / SCN2A / Sodium channel, voltage-gated, type II, alpha subunit /

-4.88

/ Ion channel activity
NM_001140537/ DW568798 / SH3KBP1 / SH3-domain kinase binding protein 1 / -3.24 / -3.60 / Cell death; vesicular transport
NM_001141914 / SLC10A3 / Solute carrier family 10, member 3 /

3.74

/

3.77

/ Transport
BT059426 / SNAP25a / Synaptosomal-associated protein, 25kDa, fish-specific gene variant /

-3.75

/ Ion channel activity

TC103656

/

STX18

/

Syntaxin 18

/

5.35

/ Vesicular transport
TC105106 / TANK / TRAF family member-associated NFKB activator /

-3.15

/ Cell death and survival
TC79864 / TAOK / TAO kinase /

3.41

/ Cytoskeletal structure and organization
TC73945 / TERT / Telomerase reverse transcriptase /

-4.08

/ Lipid metabolism
TC87403 / TPX2 / Microtubule-associated TPX2 homolog /

-12.02

/ Cytoskeletal structure and organization
TC97387 / TRAPPC4 / Trafficking protein particle complex 4 /

3.31

/ Vesicular transport

BT048481

/

TRAPPC5

/

Trafficking protein particle complex 5

/

15.76

/

Vesicular transport

NM_001140295

/

UEVLD

/

UEV and lactate/malate dehyrogenase domains-containing protein

/

6.20

/ Protein degradation

TC89672

/

VAMP1

/

Vesicle-associated membrane protein 1

/

5.47

/ Vesicular transport