Table S1. List of the microarray genes considered in the study with their function.

Group / Function / Genes
Antibiotic-resistance genes / Beta-Lac\tamase Enzyme / blaZ
Beta Lactamase Regulatory Protein / blaI
Beta Lactamase Repressor / blaR
Methylase for MLSB resistance / ermA, ermB, ermC
Lincosamides / linA
Macrolide efflux proteins / msrA, mefA, mpbBM
Streptogramines acetyltransferase
Streptogramines efflux pump / vatA, vatB,
vga, vgb
Aminoglycosides acetyltransferase and phosphotransferase(Gentamicin, Tobramycin, Kanamycin) / aacA-aphD
Aminoglycosides adenyltransferase(Tobramycin, Neomycin) / aadD
Aminoglycosides phosphotransferase(Kanamycin, Neomycin) / aphA-3
Streptothricin acetyltransferase / sat
Trimethoprim dihydrofolate reductase / dfrA
Fusidic acid / far1
Mupirocin / mupR
Tetracyclines Efflux protein / tetK, tetM
Chloramphenicol acetyltransferase, Chloramphenicol efflux pump / cat, fexA
Phenicols, Lincosamides, Oxazolidinones (Linezolid) methyltransferase / cfr
Fosfomycin metallothiol transferase / fosB
Efflux pump responsible of quaternary ammonium compounds resistance / qacA, qacC
Vancomycin / vanA, vanB, vanZ
Mercury resistance operon / mer
ACME / Arginine deaminase / arcA
Superantigenic toxins / Toxic Shock Syndrome Toxin / tst-1
Enterotoxin A / entA
Enterotoxin P / entP
Enterotoxin B / entB
Enterotoxin cluster C-L / entC, entL
Enterotoxin cluster D-J-R / entD, entJ, entR
Enterotoxin E / entE
Enterotoxin cluster G-I-M-N-O-U / egc
Enterotoxin H / entH
Enterotoxin cluster K-Q / entK, entQ
Leukocidins / Leukocidin / lukS, lukF
Haemolysin Gamma / hlg
Bovine Leukocidin / lukF-P83, lukM
Leukocidin D / lukD
Leukocidin E / lukE
Leukocidin X / lukX
Leukocidin Y variant 1 and variant 2 / lukY-var1, lukY-var2
Haemolysins / Haemolysin Alpha (α Toxin) / hla
Haemolysin Delta / hld
Haemolysine Beta (Phospholipase C) / hlb
Haemolysine Beta(PhospholipaseC/un-truncated) / un-truncated hlb
Phagic inserts / Staphylokinase / sak
Chemotaxis Inhibitory Protein (CHIPS) / ch
Staphylococcal Complement Inhibitor (SCIN) / scn
Exfoliative toxins / Exfoliative Toxin A / etA
Exfoliative Toxin B / etB
Exfoliative Toxin D / etD
edin factors / Epidermal cell differentiation inhibitor A / edinA
Epidermal cell differentiation inhibitor B / edinB
Epidermal cell differentiation inhibitor C / edinC
Capsule type / Capsule Type 5 / cap5
Capsule Type 8 / cap8
Proteases / Aureolysin / aur
Serine Protease A / splA
Serine Protease B / splB
Serine Protease E / splE
Glutamyl Endopeptidase / V8-Protease / sspA
Cysteine protease Staphopain B / sspB
Cysteine protease Staphopain A (Staphylopain A) / sspP
Biolfilm / Intercellular Adhesion Protein A (N-glycosyltransferase) / icaA
Intercellular Adhesion Protein C / icaC
Biofilm PIA Synthesis Protein D / icaD
Surface Protein Involved In Biofilm Formation / bap
MSCRAMMs / Bone Sialoprotein-Binding Protein / bbp
Clumping Factor A / clfA
Clumping Factor B / clfB
Collagen-Binding Adhesin / cna
Cell Wall Associated Fibronectin-Binding Protein / ebh
Enolase, Phosphopyruvate Hydratase / eno
Fibrinogen Binding Protein / fib
Fibrinogen Binding Protein, allele from MRSA252 / fib-MRSA 252
Fibronectin-Binding Protein A / fnbA
Fibronectin-Binding Protein B / fnbB
Major Histocompatibility Complex Class II Analog Protein / map
Ser-Asp Rich Fibrinogen-Binding Protein C / sdrC
Willebrand Factor - Binding Protein / vwb
Surface Protein G / sasG
Immune-evasion factors / Lysylphosphatidylglycerol Synthetase (Defensin Resistance) / mprF
Heme/Transferrin-Binding Protein / isdA
Heme/Transferrin-Binding Protein, allele from MRSA252 / isdA-MRSA252
Site-specific Deoxyribonuclease Subunit Type 1 / hsdS1
Site-specific Deoxyribonuclease Subunit Type 2 / hsdS2
Site-specific Deoxyribonuclease Subunit Type 3 / hsdS3