Table II: Selected unique peptide sequences of A/New Caledonia/20/99 and A/California/04/09.

Sequences of A/New Caledonia/20/99 are shown in blue color and sequences of A/California/04/09 are shown in black with mutations in red color.

M1 Protein: / HA Protein / HA Protein
1A.NRMGAVTTESAFGL I / 1A.MKAKLLVLLCTFTAT / 19A.VVSSHYSRRFTPEIA
1B.NRMGTVTTEAAFGLV / 1B.MKA I LVVLLYTFATA / 19B.VGSSR YSKKFKPEIA
2A.VTTESAFGL I CATCE / 2A.LVLLCTFTATYADTI / 20B.YSRRFTPEIAKRPKV
2B.VTTEAAFGLVCATCE / 2B.VVLLYTFATANADTL / 20B.YSKKFKPEIA I RPKV
3A.QARQMVQAMRAIGTH / 3A.TFTATYADTICIGYH / 21A.R I NYYWTLLEPGDTI
3B. QTRQMVHAMRTIGTH / 3B.TFATANADTLCIGYH / 21B.RMNYYWTLVEPGDKI
4A.SSWPNHTVTGVSASC / 22A.LLEPGDTIIFEANGN
4B.SSWPNHDSNKGVTAA / 22B.LVEPGDKITFEATGN
5A.HTVTGVSASCSHNGK / 23A.DTII FEANGNLIAPW
5B.HDSNKGVTAACPHAG / 23B.DKITFEATGNLVVPR
6A.GVSASCSHNGKSSFY / 24A.EANGNLIAPWYAFAL
6B.GVTAACPHAGAKSFY / 24B.EATGNLVVPRYAFAM
7A.CSHNGKSSFYRNLLW / 25A.LIAPWYAFALSRGFG
7B.CPHAGAKSFYKNLIW / 25B.LVVPRYAFAMERNAG
8A.KSSFYRNLLWLTGKN / 26A.YAFALSRGFGSGIIT
8B.AKSFYKNLIWL VKKG / 26B.YAFAMERNAGSGIII
9A.RNLLWLTGKNGLYPN / 27A.SRGFGSGIITSNAPM
9B.KNLI WLV KKGNSYPK / 27B.ERNAGSGII ISDTPV
10A.LTGKNGLYPNLSKSY / 28A.SGIITSNAPMDECDA
10B.LVK KGNSYPKLSKSY / 28B.SGII ISDTP VHDCNT
11A.GLYPNLSKSYVNNKE / 29A. SNAPMDECDAKCQTP
11B.NSYPKLSKSY I NDKG / 29B.SDTPVH DCNTTCQTP
12A.LSKSYVNNKEKEVLV
12B.LSKSYI NDKGKEVLV
13A. VNNKEKEVLVLWGVH
13B.I NDKGKEVLVLWG I H
14A.LWGVHHPPNIGNQRA
14B.LWGI HHPSTSADQQS
15A.HPPNIGNQRALYHTE
15B.HPSTSADQQSLYQNA
16A.GNQRALYHTENAYVS
16B.ADQQSL YQNADTYVF
17A.LYHTENAYVSVVSSH
17B.LYQNADTYVFVGSSR
18A.NAYVSVVSSHYSRRF
18B.DTYVFVGSSRYSKKF
NP Protein: / NA Protein: / NS1 Protein:
1A.QMETDGERQNATEIR / 1A.SIQTGSQNHTGVCNQ / 1A.SFLWHVRKQVADQDL
1B.QMETGGERQDATEIR / 1B.SIQLGNQNQIETCNQ / 1B.SFLWH I RKRFADNGL
2A.TELKLNDYEGRLIQN / 2A.SQNHTGVCNQRI ITY / 2A.HVRKQVADQDLGDAP
2B.TELKLSDYDGRLIQN / 2B.NQNQIETCNQSVITY / 2BH I RKRFADNGLGDAP
3A.VYGPAVASGYDFEKE / 3A.GVCNQRI ITYENSTW / 3A.ERILKEESDEAFKMT
3B.VYGLAVASGHDFERE / 3B.ETCNQSVITYENNTW / 3B.EWILKEESSETLRMT
4A.VASGYDFEKEGYSLV / 4A.YVNINNTNVVAGKDK / 4A.EESDEAFKMTMASAL
4B.VASGHDFEREGYSLV / 4B.YVNI SNTNFAAGQSV / 4B.EESSETLRMTIASVP
5A.DFEKEGYSLVGLLQT / 5A.NTNVVAGKDKTSVTL / 5A.AFKMTMASALASRYL
5B.DFEREGYSLVGI D PF / 5B.NTNFAAGQSVVSVKL / 5B.TLRMT I ASVPTSRYL
6A.GYSLVGVDPFKLLQT / 6A.AGKDKTSVTLAGN / 6A.MASALASRYLTDMTI
6B.GYSLVG I DPFKLLQN / 6B.AGQSVVSVKLAGN / 6B.I ASVPTSRYLSDMTL
7A.GVDPFKLLQTSQVYS / 7A.ITETIKSWK KRILRT / 7A.SVIFDRLENLTLLRA
7B.G I DPFKLLQNSQVVS / 7B.ITDTIKSWRNNILRT / 7B.SVIFNRLETL ILLRA
8A.KLLQTSQVYSL I RPN / 8A.SYKFKIEKGKVTKSI / 8A.VRVSETLQRFAWRSS
8B.KLLQNSQVVSLMRPN / 8B.SYKFRIEKGKIVKSV / 8B.VRVSENIQRFAWRNC
9A.RNLPFDKTTIMAAFT / 9A.IEKGKVTKS I E LNAP / 9A.TLQRFAWRSSNET GG
9BRNLPF ERATVMAAFS / 9B.IEKGK IVKSVEMNAP / 9B.NIQRFAWRNCDENGR
10A.DKTTIMAAFTGNTEG / 10A.SSYPDTGTVMCVCRD / 10A.AWRS S NETGGPPFTP
10B.ERATVMAAFSGNNEG / 10B.SSYPDS SE I TCVCRD / 10B.AWRNCDENGRPSLPP
11A. GNTEGRTSDMRAE II / 11A.NPRPKDGEGSCNPVT / 11A.NE TGGPPFTPTQK
11B. GNNEGRTSDMRTE VI / 11B.NPRPNDKTGSCGPVS / 11B.DENGRPSLPPEQK
12A.RTSDMRAEI IKMMES / 12A.DGEGSCNPVTVDGAD
12B.RTSDMRTEVI RMMES / 12B.DKTGSCGPVSSNGAN
13A.RAEI IKMMESARPEE / 13A.SNPVTVDGADGVKGF
13B.RTEVI RMMESAKPED / 13B.SGPVS SNGANGVKGF
14A.KMMESARPEEVSFQG / 14A.GRTKSNRLRKGFEMI
14B.RMMESAKPEDLSFQG / 14B.GRTKS I SSRNGFEMI
15A.GWTDTDSDFSVKQDV
15B.GWTGTDNNFSI KQDI
16A.DSDFSVKQDVVAITD
16B.DNNFSI KQDI VGINE
17A.VKQDVVAITDWSGYS
17B.I KQD I VGINEWSGYS