SupplementaryTable 1 Description of rabies virus isolates used in the molecular epidemiology study.

Country / Year of isolation / Region / Species / Isolate / Phylo group (N) / Phylo group (G) / Source reference / GenBank accession number
N / G
Ukraine / 2002 / Cherkasy / Fox / Rvu02-01 / C / c / This study / JN656471 / JN656529
2002 / Vinnytsia / Fox / Rvu02-02 / NEE / nee / This study / JN656492 / JN656515
2002 / Kherson / Fox / Rvu02-03 / C / c / This study / JN656491 / JN656523
2002 / Kherson / Dog / Rvu02-06 / c / This study / / / JN656530
2002 / Kharkiv / Fox / Rvu02-07 / c / This study / / / JN656531
2002 / Luhansk / Fox / Rvu02-08 / C / c / This study / JN656476 / JN656528
2002 / Sumy / Fox / Rvu02-09 / C / c / This study / JN656473 / JN656524
2002 / Chernihiv / Cattle / Rvu02-10 / C / c / This study / JN656474 / JN656532
2002 / Chernihiv / Fox / Rvu02-13 / NEE / / / This study / JN656494 / /
2002 / Khmelnytsky / Fox / Rvu02-15 / C / / / This study / JN656472 / /
2002 / Volyn / Fox / Rvu02-16 / NEE / / / This study / JN656502 / /
2008 / Luhansk / Stray cat / Rvu08-01 / C / / / This study / JN656477 / /
2008 / Luhansk / Dog / Rvu08-03 / C / * / This study / JN656478 / /
2008 / Sumy / Dog / Rvu08-04 / C / * / This study / JN656484 / /
2008 / Sumy / Dog / Rvu08-05 / C / * / This study / JN656486 / /
2008 / Sumy / Stray dog / Rvu08-07 / C / * / This study / JN656487 / /
2008 / Donetsk / Cat / Rvu08-08 / C / * / This study / JN656488 / /
2008 / Donetsk / Cat / Rvu08-11 / C / * / This study / JN656485 / /
2008 / Kharkiv / Cat / Rvu08-12 / C / * / This study / JN656489 / /
2008 / Kharkiv / Cat / Rvu08-13 / C / * / This study / JN656490 / /
2008 / Cherkasy / Cat / Rvu08-17 / NEE / * / This study / JN656495 / /
2008 / Vinnytsia / Cat / Rvu08-22 / NEE / * / This study / JN656504 / /
2008 / Kirovohrad / Dog / Rvu08-24 / C / * / This study / JN656475 / /
2008 / Chernihiv / Stray cat / Rvu08-27 / C / * / This study / JN656480 / /
2008 / Chernihiv / Dog / Rvu08-28 / C / /* / This study / JN656481 / /
2009 / Poltava / Stray cat / Rvu09-01 / C / / / This study / JN656482 / /
2009 / Poltava / Dog / Rvu09-02 / C / c / This study / JN656479 / JN656525
2009 / Poltava / Cat / Rvu09-03 / C / This study / JN656483 / JN656527
2009 / Dnipropetrovsk / Cat / Rvu09-04 / NEE / * / This study / JN656493/ / /
2009 / Dnipropetrovsk / Cat / Rvu09-06 / c / This study / JN656510 / JN656526
2009 / Dnipropetrovsk / Cat / Rvu09-07 / NEE / nee / This study / JN656496 / JN656517
2009 / Odessa / Cat / Rvu09-39 / NEE / / / This study / JN656500 / /
2010 / Odessa / Cat / Rvu10-01 / NEE / / / This study / JN656508 / /
2010 / Odessa / Dog / Rvu10-04 / NEE / / / This study / JN656503
2010 / Odessa / Marten / Rvu10-08 / NEE / nee / This study / JN656507 / JN656519
2010 / Odessa / Fox / Rvu10-09 / NEE / nee / This study / JN656505 / JN656522
2010 / Odessa / Stray dog / Rvu10-14 / NEE / nee / This study / JN656506 / JN656521
2010 / Odessa / Stray cat / Rvu10-18 / NEE / nee / This study / JN656499 / JN656516
2010 / Odessa / Polecat / Rvu10-20 / NEE / / / This study / JN656501 / /
2010 / Odessa / Stray dog / Rvu10-26 / NEE / / / This study / JN656497 / /
2010 / Odessa / Dog / Rvu10-29 / NEE / nee / This study / JN656509 / JN656520
2010 / Odessa / Fox / Rvu10-31 / NEE / nee / This study / JN656498 / JN656518
2010 / Odessa / Stray dog / Rvu10-33 / NEE / / / This study / JN656511 / /
Austria / 1994 / Red fox / 9447 / we / Bourhy et al, 1999 / U42708 / /
Germany / 1991 / Red fox / 9202 / Ce / Ce / Bourhy et al, 1999 / U42701 / Af134338
1991 / Red fox / 9212 / ce / ce / Bourhy et al, 1999 / U22475 / Af134337
1990 / Red fox / Rv313 / we / Horton et al., un published / / / GU936875
Estonia / 2006 / Racoon dog / Tr06001851mt66 / nee / Cliquet et al., 2012 / JN109220 / /
2006 / Red fox / Tr0603044mt90 / nee / Cliquet et al., 2012 / JN109227 / /
1985 / Racoon dog / 9142 / nee / Bourhy et al, 1999 / / / Af134339
1985 / Racoon dog / 9339 / nee / Bourhy et al, 1999 / / / Af134335
Latvia / 1999 / Badger / 22 / nee / Vanaga et al., 2003 / Ay277578 / /
1999 / Dog / 18 / nee / Vanaga et al., 2003 / Ay277576 / /
1999 / Fox / 12 / nee / Vanaga et al., 2003 / Ay277574 / /
Lithuania / 06lt4lt / nee / Stankevicius,A., et al., unpublished / EU616717 / /
06lt5lt / nee / Stankevicius,A., et al., unpublished / EU616718 / /
France / 1989 / Red fox / 8903 / we / Bourhy et al, 1999 / / / Af134329
1974 / Red fox / 9223 / We / we / Bourhy et al, 1999 / U43433 / af134326
1994 / Red fox / 9445 / we / Bourhy et al, 1999 / / / Af134332
1984 / Hedgehog / 8661 / We / Bourhy et al, 1999 / U43434 / /
Hungary / 1993 / Red fox / 9384 / ee / ee / Bourhy et al, 1999 / U42999 / AF134340
1991 / Human / 9215 / d / Bourhy et al, 1999 / U43025 / /
Poland / 1992 / Fox / 9689 / ee / Bourhy et al, 1999 / Af033881 / /
1994 / Racoon dog / 9677 / ce / Bourhy et al, 1999 / Af033893 / /
2010 / Małopolska / Fox / 10.14141.ZW2 / NEE / This study / JN656512 / /
2006 / Warminsko-Mazurskie / Racoon dog / 1202280506 / nee / nee / This study / JN656513 / JN656534
2004 / Racoon dog / RV60 / ce / ce / This study / JN656514 / JN656533
Romania / 2008 / Gorj / Red fox / RO-43 / d / Turcitu et al, 2010 / GU086654 / /
2008 / Gorj / Red fox / Ro-44 / D / Turcitu et al, 2010 / GU086655 / /
2007 / Braila / Red fox / Ro-2026 / d / Turcitu et al, 2010 / GU086609 / /
2006 / Satu mare / Red fox / ro-2535 / nee / Turcitu et al, 2010 / GU086628 / /
2006 / Valcea / Red fox / ro-2537 / nee / Turcitu et al, 2010 / GU086619 / /
2006 / Tulcea / Jackal / ro-1303 / nee / Turcitu et al, 2010 / GU086661 / /
2008 / Bacau / Red fox / Ro-40 / nee / Turcitu et al, 2010 / GU086651 / /
Russia / Krasnodar / Red fox / 1305f / C / c / Kuzmin et al, 2004 / AY352461 / /
Tula / Red fox / rv246 / C / Kuzmin et al, 2004 / AY352510 / /
Volgograd / Red fox / 2072f / C / Kuzmin et al, 2004 / AY352485 / /
Volgograd / Red fox / 2070f / C / Kuzmin et al, 2004 / AY352484 / AY353885
Novosibirsk / Human / rvhn / C / C / Kuzmin et al, 2004 / AY352463 / AY353865
Orenburg / Cat / 999c / C / c / Kuzmin et al, 2004 / AY352473 / AY353875
Pskov / Human / rv245 / c / Kuzmin et al, 2004 / / / AY353877
Orenburg / Human / Rv1590 / C / Kuzmin et al, 2004 / AY352472 / /
Altay / Red fox / 3502f / C / Kuzmin et al, 2004 / AY352455 / /
Omsk / Steppe fox / 3683c / C / Kuzmin et al, 2004 / AY352469 / /
Omsk / Red fox / 3605f / C / Kuzmin et al, 2004 / AY352467 / /
Omsk / Red fox / 3665f / C / Kuzmin et al, 2004 / AY352466 / /
Omsk / Red fox / Rv260 / C / Kuzmin et al, 2004 / AY352465 / /
Tula / Dog / Rv237 / d / Kuzmin et al, 2004 / AY352507 / /
Tula / Red fox / Rv247 / d / Kuzmin et al, 2004 / AY352511 / /
Tula / Human / Rv239 / d / Kuzmin et al, 2004 / AY352509 / /
Tula / Red fox / Rv299 / d / D / Kuzmin et al, 2004 / AY352479 / AY353880
Tula / Dog / Rv234 / d / Kuzmin et al, 2004 / AY352476 / /
Bryansk / Red fox / Rv262 / d / D / Kuzmin et al, 2004 / AY352457 / AY353859
Pskov / Red fox / Rv1596 / Nee / Nee / Kuzmin et al, 2004 / AY352474 / AY353876
1990 / Pskov / Dog / Rv449 / Nee / Botvinkin et al., unpublished / DQ317521 / /
Serbia / 1997 / Kraljevo / Cat / Rv1197 / ee / ee / McElhinney et al, 2011 / JF973785 / JF973753
2000 / Vrsac / Canine / Rv1272 / ee / McElhinney et al, 2011 / JF973804 / /
Slovak Republic / 1994 / Cat / 94250 / nee / Bourhy et al, 1999 / U43007 / /
Slovenia / 1994 / Red fox / 9494 / we / Bourhy et al, 1999 / U43008 / /
2009 / Kopper / Red fox / 1085-09 / We / Rihtaric et al., 2011 / / / HM852198
1994 / Jesenice / Cattle / 202-94 / we / Rihtaric et al., 2011 / / / HM852173
Czech Republic / 1995 / Semily / Fox / Rv860 / ce / McElhinney et al, 2011 / JF973851 / /
BiH / 2004 / Prijedor / Dog / Rv15934 / we / McElhinney et al, 2011 / JF973824 / /
1986 / Wolf / 8653 / EE / EE / Bourhy et al, 1999 / U42704 / AF134341
Bosnia-Croatia / 1986 / Velika kladusa / Canine / Rv1189 / we / McElhinney et al, 2011 / / / JF973750
Croatia / 1986 / Red fox / 86111 / we / Bourhy et al, 1999 / U42706 / /
Vaccine strains / SAD B19 / Geue et al, 2008 / EF206709 / EF206709
SAG2 / Geue et al, 2008 / EF206719 / EF206719
Laboratory strains / CVS / Tordo et al, 1986 / D42112 / /
Canada / 1993 / Dog / Arctic / Nadin-Davis et al, 1994 / U03769 / /
Greenland / 1981 / Arctic fox / 8684gro / Bourhy et al, 1999 / U22654 / /
Guinea / 1986 / Dog / 8660gui / Bourhy et al, 1999 / U22487 / /
Thailand / Human / 8738tha / Kissi et al., 1995 / U22653 / /
India / / / / / Jayakumar et al. 2004 / AF374721 / /
China / 1992 / Human / SBH / Li et al. unpublished / EU159392 / /
China / 1983 / CTN / Tang et al, 2000 / / / AY009100
Thailand / 8743tha / Kassis and Bourhy, unpublished / / / AF401285
Sri Lanka / 1986 / Dog / 94257sri / Bourhy et al., 2008 / / / EU086156

Phylogroups are detailed for rabies viruses from Ukraine and for RV isolates from neighbouring countries (Estonia, Latvia and Russia) and from Europe (Austria, Bosnia-Herzegovina, the Czech Republic, Croatia, France, Germany, Hungary, Lithuania, Poland, Romania, Serbia, the Slovak Republic and Slovenia).

Abbreviations: BIH: Bosnia-Herzegovina; G: glycoprotein; N: nucleoprotein. Groups EE: Eastern Europe, NEE: North-Eastern Europe, CE: Central Europe, WE: Western Europe, C: European part of Russia, D: centre of the European part of Russia, E: North-Western part of Russia, / : sequences not available, *: not tested.