Balestrieri et al., Pine marten vs. stone marten in agricultural lowlands: a landscape-scale, genetic survey.

S1. Genetic results of the 33sequenced samples. The correspondence with previously published haplotypes and main phylogroups(Phy.) identified in Ruiz-González et al. (2013b) is shown (%PI: percent pairwise identity).

N / Id. / Haplotype / New? / GenBank Acc. Num. Correspondence / GenBank Acc. Num. Description / References / e-value / %PI / Phy. / Haplotype Correspondence / Geographic Distribution
51 / MF / Mf_It_1 / Yes / KX649915 / mitochondrial DNA, D-loop region / This study
52 / MF / Mf_It_2 / Yes / KX649916
58 / MF / Mf_It_3 / Yes / KX649917
78 / MF / Mf_It_3 / Yes / KX649917
76 / MF / Mf_It_4 / Yes / KX649918
79 / MF / Mf_It_5 / Yes / KX649919
81 / MF / Mf_It_5 / Yes / KX649919
101 / MF / Mf_It_6 / No / AB705456 / Mitochondrial DNA, D-loop region, haplotype: MF1 / 2,773-148 / 100 / MF1 / Bulgaria
53 / MM / Mm_It_1 / No / HM026032 / haplotype Mm43 cytochrome b (cytb) gene, partial cds; tRNA-Thr and tRNA-Pro genes, D-loop, and tRNA-Phe gene, complete sequence; and 12S ribosomal RNA gene, partial sequence; mitochondrial / Ruiz-Gonzalez et al.2013a / 8.43e-164 / 100 / CNE / Mm43 / Hungary
59 / MM / Mm_It_1 / No
60 / MM / Mm_It_1 / No
67 / MM / Mm_It_1 / No
72 / MM / Mm_It_1 / No
90 / MM / Mm_It_1 / No
55 / MM / Mm_It_2 / No / HM026007, AF336961 / haplotype Mm18 cytochrome b (cytb) gene, partial cds; tRNA-Thr and tRNA-Pro genes, D-loop, and tRNA-Phe gene, complete sequence; and 12S ribosomal RNA gene, partial sequence; mitochondrial; Martesmartes haplotype m mitochondrial D-loop, partial sequence / Ruiz-Gonzalez et al. 2013a; Davison et al. 2001 / 3.66e-152 / 100 / MED / Mm18, Happlotype k / N Italy, Netherlands, Germany
87 / MM / Mm_It_2 / No / HM026007, HM026014 / haplotype Mm18 cytochrome b (cytb) gene, partial cds; tRNA-Thr and tRNA-Pro genes, D-loop, and tRNA-Phe gene, complete sequence; and 12S ribosomal RNA gene, partial sequence; mitochondrial / Ruiz-Gonzalez et al. 2013a; Davison et al. 2001 / 3.66e-152 / 100 / MED / Mm18, Happlotype k / N Italy, Netherlands, Germany
89 / MM / Mm_It_2 / No

S1.continued

62 / MM / Mm_It_3 / No / HM025997, HM025998, HM026012, HM026013, HM026016, AF336959 / haplotypes Mm8,9,23,24,27 cytochrome b (cytb) gene, partial cds; tRNA-Thr and tRNA-Pro genes, D-loop, and tRNA-Phe gene, complete sequence; and 12S ribosomal RNA gene, partial sequence; mitochondrial; haplotype k mitochondrial D-loop, partial sequence / Ruiz-González et al. 2013a; Davison et al. 2001 / 3.66e-152 / 100 / MED / Mm8,Mm9,Mm23,Mm24,Mm27; Haplotype k / Spain, Portugal, S Italy, Germany, Poland, Lithuania
64 / MM / Mm_It_3 / No / HM025997, HM025998, HM026002, HM026012,
HM026013, HM026016 / haplotypes Mm8,9,13,23,24,27 cytochrome b (cytb) gene, partial cds; tRNA-Thr and tRNA-Pro genes, D-loop, and tRNA-Phe gene, complete sequence; and 12S ribosomal RNA gene, partial sequence; mitochondrial / Ruiz-González et al. 2013a; Davison et al. 2001 / 3.66e-152 / 100 / MED / Mm8,Mm9,Mm23,Mm24,Mm27 Haplotype k / Spain, Portugal, S Italy, Germany, Poland, Lithuania
65 / MM / Mm_It_3 / No
69 / MM / Mm_It_3 / No
74 / MM / Mm_It_3 / No
92 / MM / Mm_It_3 / No / HM025997, HM025998, HM026002, HM026012,
HM026013,
HM026016 / haplotypes Mm8,9,13,23,24,27 cytochrome b (cytb) gene, partial cds; tRNA-Thr and tRNA-Pro genes, D-loop, and tRNA-Phe gene, complete sequence; and 12S ribosomal RNA gene, partial sequence; mitochondrial / Ruiz-González et al. 2013a; Davison et al. 2001 / 3.66e-152 / 100 / MED / Mm8,Mm9,Mm23,Mm24,Mm27 Haplotype k / Spain, Portugal, S Italy, Germany, Poland, Lithuania
98 / MM / Mm_It_3 / No
100 / MM / Mm_It_3 / No
103 / MM / Mm_It_3 / No
105 / MM / Mm_It_3 / No
106 / MM / Mm_It_3 / No
107 / MM / Mm_It_3 / No
85 / MP / No / FJ556593 / haplotype Mph25 cytochrome b (cytb) gene, partial cds; tRNA-Thr and tRNA-Pro genes, complete sequence; and D-loop, partial sequence; mitochondrial. / Cabria et al. 2011 / 8.18e-161 / 100 / Mph25
102 / VV / No / KJ846554, KJ846556 / haplotypes 135, 137 tRNA-Pro gene and D-loop, partial sequence; mitochondrial / Statham et al. 2014 / 3.64e-142 / 100 / 135.137
54 / VV / No / KJ846606, KJ846527 / haplotypes 191,107 tRNA-Pro gene and D-loop, partial sequence; mitochondrial, / Statham et al. 2014 / 3.64e-142 / 100 / 191, 107
99 / VV / No / 3.64e-142 / 100 / 191, 107

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