Additional File 7 All Predicted Novel Mirnasin D.Latiflorus

Additional File 7 All Predicted Novel Mirnasin D.Latiflorus

Additional file 7All predicted novel miRNAsin D.latiflorus

miRNA name / sequence of miRNA / read NO
in P-1 / reads
in P-1 / read NO
in P-2 / reads
in P-2 / the location and MEF of the precursor / MFEI of the stem-loop structure
dla-miRn1 / AUCACAGGACAUUUUAUCAAA / t0631206 / 3 / t0549638 / 3 / Unigene121568_All:29:130:+ 102(nt) -62.70(kcal/mol) / 2.151
dla-miRn2 / AUAGGGCAAAUGAUCAAAGG / t0592442 / 3 / 0 / Unigene123918_All:359:473:+ 115(nt) -48.90(kcal/mol) / 1.116
dla-miRn3 / GACAUGUGGCAUAAAAUACU / t0390881 / 4 / t5117829 / 1 / Unigene125818_All:906:1039:+ 134(nt) -53.42(kcal/mol) / 1.139
dla-miRn4 / CGACUGUAGAGUGAAGUCGCG / t0020616 / 59 / t0003397 / 302 / Unigene138857_All:47:185:+ 139(nt) -83.10(kcal/mol) / 1.046
dla-miRn5 / UACCAUGUUAGGAUUGAAGGA / t0491014 / 3 / t0189258 / 8 / Unigene14992_All:38:156:+ 119(nt) -46.90(kcal/mol) / 1.035
dla-miRn6 / UUGGAUGGUUCGAGUGAGUGG / t0326777 / 5 / t0169081 / 9 / Unigene36687_All:621:763:+ 143(nt) -80.40(kcal/mol) / 1.073
dla-miRn7 / UGUAAUAUCGUUUUUGUCAUC / t0253642 / 6 / t0103438 / 15 / Unigene49468_All:91:233:+ 143(nt) -78.10(kcal/mol) / 1.912
dla-miRn8 / UUUAGAGACAUUGGACAAAGG / t0000938 / 1016 / t0000730 / 1024 / Unigene5177_All:503:604:+ 102(nt) -54.50(kcal/mol) / 1.403
dla-miRn9 / AAUUCGUAGUAACGUACGGAC / t0100585 / 14 / t0298376 / 6 / Unigene67523_All:221:375:+ 155(nt) -63.80(kcal/mol) / 0.96
dla-miRn10 / UAAUUAAAAAUCGUCUGUGAU / t0514644 / 3 / t0569522 / 3 / Unigene78239_All:693:760:+ 68(nt) -30.00(kcal/mol) / 1.471
dla-miRn11 / UCAAGGAAUCAGACAGCUGAGA / t0162791 / 9 / t0246106 / 7 / Unigene86865_All:2:114:+ 113(nt) -61.51(kcal/mol) / 1.198
dla-miRn12 / UGAGACAUCAUGGGGCAAAUGA / t0531185 / 3 / t0330817 / 5 / Unigene26930_All:1230:1319:+ 90(nt) -57.60(kcal/mol) / 1.493
dla-miRn13 / AUCACAGGGCAUUUUAUCAAA / 0 / t0407805 / 4 / Unigene71500_All:592:697:+ 106(nt) -72.90(kcal/mol) / 1.805
dla-miRn14 / GUGCGUUGCUACGGAUUUUAA / t1331738 / 2 / t0234816 / 7 / Unigene91148_All:73:210:+ 138(nt) -56.04(kcal/mol) / 0.948
dla-miRn15 / ACGUGGCAGAGAUCUAGAGCA / t1063102 / 2 / t0723317 / 3 / Unigene9958_All:1647:1736:+ 90(nt) -41.26(kcal/mol) / 0.875
dla-miRn16 / UUCUUGACCUUGCAAGACUUU / t0000314 / 2574 / t0000265 / 2225 / Bd3:49903053:49903152:+ 100(nt) -34.30(kcal/mol) / 0.9
dla-miRn17 / AGUAUGAGCCCCGUGGACUAGC / t1286329 / 2 / 0 / Bd1:59801030:59801093:+ 64(nt) -32.40(kcal/mol) / 0.928
dla-miRn18 / UGUAGUUUAGUGGUGAGAAUU / t0030744 / 41 / t0000153 / 3389 / Bd1:73311508:73311642:+ 135(nt) -38.90(kcal/mol) / 0.864
dla-miRn19 / UUCAGUUUUCUCCAACAUCUUA / 0 / t0013503 / 93 / Bd3:12513828:12513901:+ 74(nt) -39.10(kcal/mol) / 1.59
dla-miRn20 / GGGUUUUACCCGAUAAAGAGA / t0150075 / 10 / t0142519 / 11 / 10_dna_chromosome_chromosome_Sbi1_10_1_60981646_1:56959664:56959803:+ 140(nt) -63.80(kcal/mol) / 1.063
dla-miRn21 / GUUUGGGACUGCUUCACAAACU / t0466815 / 4 / t0472034 / 4 / 1_dna_chromosome_chromosome_Sbi1_1_1_73840631_1:1032356:1032466:+ 111(nt) -45.30(kcal/mol) / 0.898
dla-miRn22 / AAACACUUGGCUCUAUUAUUG / t0389879 / 4 / t0442349 / 4 / 5_dna_chromosome_chromosome_Sbi1_5_1_62352331_1:8871183:8871251:+ 69(nt) -41.50(kcal/mol) / 1.804
dla-miRn23 / UUUGGGACUGCUUCACAAAUU / t0410349 / 4 / t7205907 / 1 / 5_dna_chromosome_chromosome_Sbi1_5_1_62352331_1:49478431:49478538:+ 108(nt) -44.70(kcal/mol) / 1.086
dla-miRn24 / UCUCUCUCUCCCUUGAAGGCUC / t0000990 / 955 / t0000298 / 2068 / 5_dna_chromosome_chromosome_Sbi1_5_1_62352331_1:49763311:49763429:+ 119(nt) -62.40(kcal/mol) / 0.961
dla-miRn25 / UCUCUCUCUCCCUUGAAGGCU / t0013847 / 85 / t0008928 / 133 / chr11|13111:19013840:19013949:+ 110(nt) -54.00(kcal/mol) / 0.937
dla-miRn26 / AGAGGAAGGAGUGCUUAAGAA / t0056441 / 24 / t0061394 / 24 / 6_dna_chromosome_chromosome_Sbi1_6_1_62208784_1:46314062:46314222:+ 161(nt) -63.30(kcal/mol) / 0.917
dla-miRn27 / UGGAGCUGUUUUGUGCCAAAC / t0395474 / 4 / t0143510 / 11 / 9_dna_chromosome_chromosome_Sbi1_9_1_59635592_1:5807086:5807163:+ 78(nt) -47.40(kcal/mol) / 1.276
dla-miRn28 / CAAAAUAUGGAUGUGUUGGAAA / t6786968 / 1 / t0626872 / 3 / 5_dna_chromosome_chromosome_Sbi1_5_1_62352331_1:9572929:9573026:+ 98(nt) -47.60(kcal/mol) / 1.527
dla-miRn29 / CGCCCAAUCGUUGGGCGACU / t0379762 / 4 / t0594590 / 3 / gi|242383692|emb|FP092535.1|:361:447:+ 87(nt) -52.80(kcal/mol) / 0.98
dla-miRn30 / UCACGGAGUUGGAAAAUACCA / t0151645 / 10 / t0240881 / 7 / chr04|13104:31000539:31000656:+ 118(nt) -62.30(kcal/mol) / 1.232
dla-miRn31 / UGGAAAUUGAGGAUUUACCC / t0668672 / 3 / t1136902 / 2 / chr07|13107:16860861:16860969:- 109(nt) -52.40(kcal/mol) / 1.202
dla-miRn32 / UGCAUCCCUGCUACAAUGUUG / t0101861 / 14 / t0223901 / 7 / chr08|13108:23876523:23876790:- 268(nt) -114.20(kcal/mol) / 0.852
dla-miRn33 / GAUGGCUUGUGGCUAAAACCA / t1236285 / 2 / t0020843 / 63 / chr04|13104:18305892:18305977:+ 86(nt) -33.50(kcal/mol) / 0.818
dla-miRn34 / AGAACAAUAGGAAUGGGAGGC / t0186749 / 8 / t0213712 / 8 / chr04|13104:21478372:21478489:+ 118(nt) -53.40(kcal/mol) / 0.95
dla-miRn35 / UUGUUUUUCUCCAAUAUCUCA / t4862759 / 1 / t0186103 / 9 / chr07|13107:16718777:16718891:- 115(nt) -48.20(kcal/mol) / 1.467
dla-miRn36 / AGCGCUGCAGCGCUGAAGUAUG / t0673321 / 3 / t0340528 / 5 / PH01173582:400:498:+ 99(nt) -43.50(kcal/mol) / 0.839
dla-miRn37 / AGGGGCGGACCCACAGGGUAUG / t0502338 / 3 / 0 / PH01000103:288981:289058:+ 78(nt) -44.40(kcal/mol) / 0.835
dla-miRn38 / AGUCGCCGACUAGUCGGCAAGU / t0416297 / 4 / t0372987 / 5 / PH01000152:750814:750913:+ 100(nt) -60.30(kcal/mol) / 1.206
dla-miRn39 / AUGGACUGGGAUGACACAGCAU / t0270107 / 6 / t0334133 / 5 / PH01000126:322282:322443:+ 162(nt) -106.20(kcal/mol) / 1.311
dla-miRn40 / AUUGACAGAAGAGAGUGAGCAC / t0003048 / 330 / t0000992 / 803 / PH01000586:12168:12271:+ 104(nt) -50.70(kcal/mol) / 1.073
dla-miRn41 / GAGUUUGAUCUUGAAAUUUUGU / t0441747 / 4 / t0268526 / 6 / PH01005666:9159:9266:+ 108(nt) -38.60(kcal/mol) / 1.31
dla-miRn42 / UCACAGACGGUUGGUAGAUAGA / t0552421 / 3 / 0 / PH01004097:31742:31905:+ 164(nt) -109.20(kcal/mol) / 1.332
dla-miRn43 / UCGCAGGAGAGAUGACGCCCAC / t0004428 / 234 / t0000440 / 1535 / PH01001122:158026:158128:+ 103(nt) -79.80(kcal/mol) / 1.217
dla-miRn44 / UCUCGGAUCAGGCUUCAUUCCU / t0309166 / 5 / t6055847 / 1 / PH01002638:12582:12713:+ 132(nt) -55.00(kcal/mol) / 0.833
dla-miRn45 / UUAAAAACCGUCUGUGAUAUUC / t0466084 / 4 / t1340985 / 2 / PH01003216:47345:47458:+ 114(nt) -58.20(kcal/mol) / 1.605
dla-miRn46 / UUCAGGAGAGAUGACACCGACA / t0099101 / 14 / t0005987 / 186 / PH01008094:15293:15402:+ 110(nt) -63.10(kcal/mol) / 1.147
dla-miRn47 / UUUUAAUAUAAAACCGUCUGUG / t1413627 / 2 / t0084842 / 18 / PH01000147:983148:983259:+ 112(nt) -46.50(kcal/mol) / 1.522
miRNA name / sequence of the precursor
dla-miRn1 / CAUUGCAUUUGAUAAAAUGCCCUGUGAUGUGCCACUUACAUGCGGGCCCUGGACCCACAUGUAAGUGAGACAUCACAGGACAUUUUAUCAAAUGCACAUGAA
dla-miRn2 / ACUUUGAUGUGCCAUUAAUCAUUUGCCCCAUAAUAUCUCACCGACAUACGGACUCAGGAUCUGCAUGUCAGUGAGACAUCAUAUCAUAGGGCAAAUGAUCAAAGGCACGUAAAAG
dla-miRn3 / AUUAGAAGAUGACAUGUGGCAUAAAAUACUGUAGCAUGCGCAGAACCGAACAUAAACAAAUCUCAGUGUUGCUACAGUGCGUGUUACAGUGUUGCUAUAGCGCAUAUGUGCCACAUGUCAGACGCUGAUUGGUU
dla-miRn4 / UCGCAUAUGGCGACUGUAGAGUGAAGUCGCGAAGCUACAGUAAAGUUACUGUAGCACAAAACCGAUCUGGGACAUUUAUUUCCCAGCGGACGGUUGAGAUUCGCGAAUUCACUUUACAGUCGCCGUAUGCGACUGCAGA
dla-miRn5 / UUUUGCCGUUUCUGUGAACCCUAACAUGGUAUCAAAACUGUAGUACUUACGAGUUGUAGCCAUAACAAUCUUAGUGCUAUAGCUCUGAUACCAUGUUAGGAUUGAAGGAAAUGACUAAU
dla-miRn6 / CUUUAGUGUUUUGGAUGGUUCGAGUGAGUGGAGCUCUUUUGAUUUAACUGUUUAAUUAUCGUCGAUCUAACGUGAAUUGAUGGUAAUUGGACGGUUAAUUUCAAUAGAGCUCCACCCCCACGAGCCAUUCAAAACGCUUGAGG
dla-miRn7 / UACAAAUGUUUGUAAUAUCGUUUUUGUCAUCGAAAAUUCGUACUCUUCGUUUUCGCCACUGCCAACUACAGAUUGUAAUUAGCAGUGGCGAAAAUGAAUAGUACGAUUUCUUGAUGACAAAAACGAUAUUACACACAUCUAUA
dla-miRn8 / UUAUCUUUCCUAUGUCCAGUGUCUCUAAAUAUUAUAGCUGCCCAAUAUCCAGUAAUUGGAGAGUUAUAAUAUUUAGAGACAUUGGACAAAGGAAAUAUAAUA
dla-miRn9 / ACUAGCUGAAUGUCCGUACGUUGCUACGGAUUUUAAAAAAUUUUAGAACAUAUUUGUAUACAUGUUCUAAAAAAUUUUACCACCCGUCAGUUUCAGCAGAAUAUAUAGUAUGAUAAAAUUUUAAAAUUCGUAGUAACGUACGGACAUUCAACUAG
dla-miRn10 / UACGGUUCUAAUUAAAAAUCGUCUGUGAUGUCUGCAAUUAUCACGGAUGGUUAUUAAUAAGAACCUAG
dla-miRn11 / AGCCAUCUGAUCAAGGAAUCAGACAGCUGAGAUCACCUUUGCAUGAGAAGUGAGCAAUUUCUCGUGGUUGGGCGAUGCUUGAUCUCAGCUGUUGAUUCCAUGAUCUGAUGGGU xxx-m0127 16
dla-miRn12 / GAAUUUGAUGAUUUGCACCAUUUGUCUCGUUGACAUGUGGGCCUUAGCCCCACAUGUCAAUGAGACAUCAUGGGGCAAAUCAUCAAAUGC
dla-miRn13 / UUUCAUGUGCAUUUGAUAAAAUGUCCUGUGAUGUCUCACUUACAUGUGGGUCCAGGGCCCGCAUGUAAGUGGCACAUCACAGGGCAUUUUAUCAAAUGCAAUGUAA
dla-miRn14 / CUGAAUGUCCGUGCGUUGCUACGGAUUUUAAAAACAUUAGAACAUAUUUGUAUGCACGUUCUAACAAAUUUUAUCACUCGUUAGUUCUAGAACAUAUAGUAUGAUAAAAUUUUUAAAUCCGUAGCAACGCACGGGCAU
dla-miRn15 / UUCAUCAUUGACGUGGCAGAGAUCUAGAGCACCUUCGCUAUCCUCUCAUGUUCUCCUGGAGCUUUGGAUCUCUGCUACGUCGACAAGAAC
dla-miRn16 / UUUCGCCGGGUCCAUCGCGUGGUCUUCCGACGAAUAGUUAGCAAGGUUCGAGCAACAUCGUUUCAGGUGUUCUUGACCUUGCAAGACUUUCCCUCAUCAC
dla-miRn17 / CAACACUGAAGUAUGAGCCCCGUGGACUAGCGAUUGCUUCUCCACGAGGCUCAUACCAGACGCU
dla-miRn18 / AAACAGUGGCUGUAGUUUAGUGGUGAGAAUUCCACGUUGUGGCCGUGGAGACCUGGGCUCGAAUCCCAGCAGCCACAUUUCUUCUUAGCAAACUUUUUCUUCAAUUUUUGUCACUGAGAUUUGCAGUCUUCGGAG
dla-miRn19 / GCUCUGAAAGUAAGAGUUGUAGGAAACUGAACUCUUCAGGAGUUCAGUUUUCUCCAACAUCUUAUCUUCAGCGC
dla-miRn20 / AGUACCCGACGGGUUUUACCCGAUAAAGAGACAGGUAUGAGAUGAAUUUUCUACCGUGGGUACGUUAUUGGGCAAAAUCCUAUACUCAUCGGGUAUGGGUGUGGGUGUAUACUACCCAUACCCGCCUACCCGCGGGUAAA
dla-miRn21 / AAUAGGGGGUGUUUGGGACUGCUUCACAAACUCUGCUCCACAAACUCCACCAUGGAGCAGCUCCAGAAAAAAACUGGAGUUUGUGGAGUACUUCUUUAGAUGCUCUCAUAA
dla-miRn22 / ACUUAUAGCCAAACACUUGGCUCUAUUAUUGAUCUUGCUCUAAUAGAGCCAAGUGCUUGGCUAUAAGUC
dla-miRn23 / UUAGGGGGCGUUUGGGACUGCUUCACAAAUUCUGCUCCACAAACUCCACCGUGGAGCAGCUCCAUAAAAAACUGGAGUUUGUGGAGUACCUCUUUAGGUGCUCUCACA
dla-miRn24 / GCUCUCUUGGUCUCUCUCUCCCUUGAAGGCUCUCUCUGGUAAAUCUGGUUGGCUUCCACAAUGAAUUUCCACCAGAUCUUUGUGAGAAAGCCUUCAGGAGGGGGGGAUCCAAGUGAGCC
dla-miRn25 / UUUUCUUGGAUCUCUCUCUCCCUUGAAGGCUAUCUCAUGGAGGUUUGAUGUACACCAUUGUUGCCUAAGAAACUGAGAAAGCCUUCGGGGGAGGAGAGAAGCCAAGCAAG
dla-miRn26 / CCAAAAAGGAAGAGGAAGGAGUGCUUAAGAAUAAUAGGAAUGGGAGGCAUCGGAAAGCACAUUAGACUCCAUCAUGGUUAGAGGAAACAAACAUGUUGGCUUUCCAUAAUGUUCCCACUCCCACUACUCUUAGGCUCUCCUUUCUUCCUCUUCCUGACUCA
dla-miRn27 / UUAAGGCCCCGUUUGGCGCGGCUUCUCCAGCGGCUUCAGGAGCCGUUUGGAGCUGUUUUGUGCCAAACGGGGUAAAAU
dla-miRn28 / AAACUGUUUUCAAAAUAUGGAUGUGUUGGAAACUAGGCCAUGCUUAGUUAGGGUUUUAUAACUUAGUUUCCAAUGCAUCUAUAUUUUGAAAAUAGUGC
dla-miRn29 / AUUCUACUGUCGCCCAAUCGUUGGGCGACUGGAUCCUGUCGCUGGGCGACUGGUUUCUGUCGCCGAACCAUUGGGCGACAGGAUGCU
dla-miRn30 / AUUACAAAAAUCACGGAGUUGGAAAAUACCAUCGUAUGUGUCAUUGACAUGUGGGUCCAGGCCCCACAUGUCAUUCUCACGUACGAUGGUAUUUUGCAACUCACGUAUCUUUGCAAUG
dla-miRn31 / AAAUUUAGAUUGGAAAUUGAGGAUUUACCCUCUUGAGCCAAUGACAUGUGGGGUCAUUUAAGGUCACAUGUGGGUCAGGAGGGUGAAUCCUCAAGUUCAAUCCAAGGAG
dla-miRn32 / GAAUUAGCUGCCAUGUUGCUAGUAGAGAUGCAAGCAGGCCAACCCACGAACCUGCUUAUAUGAAAAAUUAA
UGGGUAACCUGUGGAUUGACCCGUGGGUUAUCUACUAAUUUGCUUUGUAAAUGAGUUUAUGGAUCGAUCCA
CUUGCGUCUCUAGGUGCGGCAAGCUAGGCUACGACGCGAAAACCCAUGAGUUACCACUUAUUUGAUAUAUAA
GUAGGUUUUCGGGUCGUCCUGCUUGCAUCCCUGCUACAAUGUUGCAUCUAAUAA
dla-miRn33 / UUUGGAUUGUCUGGUUUUAGCUUCAAGCCUUCUUGUCAUCUAACUUUGAUAAUUGGAUGGCUUGUGGCUAAAACCAUCACUGCUAA
dla-miRn34 / GGAGCACCUAAGAACAAUAGGAAUGGGAGGCAUUAGGAAAGUUGCAAGCCAAGUCUCCACAAACAUGGAGCUUGCACUUUCCUCCAUGUUCCCAUUCCUACAGCUCUUAGACCCUCUG
dla-miRn35 / AGGCACUGGAAGUGAGAAUUGGAGGAAAACAAACUGAUUGCUGGUUGAUGCUUGCAACAGUGUGGCAAACAAUUAAUAUUCAGAUUGUUUUUCUCCAAUAUCUCACCUUCAGGUU
dla-miRn36 / UCCCAAGCGCUGCAGCGCUGAAGUAUGGCCCCCGUGGACUAGCCAUUGCUUCUCCACGAGCCUCAUACCAGGCGCUACGGCGCUGAAGUAUGUA
dla-miRn37 / UCUGUCUGACAGGGGCGGACCCACAGGGUAUGCAGGGUGGGCCACUGCAUACCCUGGGCUCCAGCCGUCAUAGACACA
dla-miRn38 / AGUUGUGACUAGUCGCCGACUAGUCGGCAAGUCGGGCGACUAGCCCUCCUAUGCGGAGGUUGUGUACCGACUUGUCGACUAAUUGUCGACUAGUCGCACG
dla-miRn39 / UUAAACUUUUUAUGCUGUGUCAUCCCGGUCCAUAGACUUUCAAAGUGUGCCAUUACUGUGCCUAAGCAAGAGGGCUAUGUUUGAGACCCAAACAGUGUUUAGGGACCGGGAUGACACACUUUGAAAGUCUAUGGACUGGGAUGACACAGCAUAAAAAGUUUA
dla-miRn40 / CUAUAAAGAGAUUGACAGAAGAGAGUGAGCACACGACGUGACUGGCAUCACAGGUAUGCCGUUCUCAUCGCGUGCUCGCUCCUCUUUCUGUCAGCCUCUCUCCG
dla-miRn41 / UUAUAUCUUUUCAAAAUUUUAACAUCAAACUCAAUCACAUUUGUAUUUAUGUUUUUCAUAUAUAUCAAAUACGUUUGAGUUUGAUCUUGAAAUUUUGUAGAGAUAUAG
dla-miRn42 / CACAAACGGUUCUAUCUACGAACUGUCUGUGAUACGCAGAAUAUCAUAGACGGUUCUAUCUACGAACCGUCUGUUAUAUUCUAUCGUAUCACAAACGGUUCGUAGAUAGAACCGUCUGUAAUAUUCUACGUAUCACAGACGGUUGGUAGAUAGAACCAUAUGUG
dla-miRn43 / AAGGUCGUCGUCGCAGGAGAGAUGACGCCCACGCCGGCCAGCUGAUUCCGUCCGCCGGCCGGCCGGCCGGCGGUGGCGUCGUCUUCCUUGCGACGACGAUCGU
dla-miRn44 / GGGUGUUUGGAAUGUAGUUUGAUCCAAGAUAUAUCUGCCUAUACAUAUAUCUAUCUAUCUGUUUGGAUAUGUAGUUUAAACUUAUUUCACAGCGGGUAUAUCUCGGAUCAGGCUUCAUUCCUCACACCGAUA
dla-miRn45 / ACGGUUCACAUUAAAAACCGUCUGUGAUAUUCGGUAAUAUCACAGAUGGUUCUUGUUCAGAACCGUUUGUGAUAGUCUGUGAACUAUCACAGACGGUUUUCAAAAUGAACUGUC
dla-miRn46 / GGGACCUGUGUUCAGGAGAGAUGACACCGACAUCAAAUGGAUUGAUUUGGACUAUGUCCACCCGUUUGAAGUGGGUGUCAUCUCGCCUGAACAUAGGAAUCACUAUCCCU
dla-miRn47 / GAAGAGGUAGUAUCACAGAUGGUUCAUGUUGAAAACCGUCUGUGAAGUAUCACUGUGAUAUUACUAAAUAUCAUAGACGAUUUUAAUAUAAAACCGUCUGUGAUACCUCACA