Supplementary Data

a. Predicted Epitopes in the Structural polyprotein 27- African prototype [Q8JUX5]

Rank / Score / Epitope / Location
1 / 1 / YPPFGAGRPGQFGDIQSRT / 998-1016
2 / 1 / RPWTPRPTIQVIRPRPRPQ / 17-35
3 / 1 / TDMSCEVPACTHSSDFGGV / 1106-1124
4 / 1 / LTCSPHRQRRSTKDNFNVY / 316-334
5 / 1 / HPFHHDPPVIGREKFHSRP / 452-470
6 / 1 / GAGKPGDSGRPIFDNKGRV / 206-224
7 / 1 / LSYRSMGEEPNYQEEWVTH / 620-638
8 / 1 / AVGMCMCARRRCITPYELT / 710-728
9 / 1 / MAVGMCMCARRRCITPYEL / 709-727
10 / 1 / TAPFGCQIATNPVRAMNCA / 1063-1081
11 / 1 / PRPWTPRPTIQVIRPRPRP / 16-34
12 / 1 / VTWGNNEPYKYWPQLSANG / 653-671
13 / 1 / VTVIPNTVGVPYKTLVNRP / 813-831
14 / 1 / ATRPYLAHCPDCGEGHSCH / 336-354
15 / 1 / SLTCSPHRQRRSTKDNFNV / 315-333
16 / 1 / TMRAVPQQKPRRNRKNKKQ / 52-70
17 / 1 / MPISIDIPDAAFTRVVDAP / 1085-1103
18 / 1 / IEVHMPPDTPDRTLLSQQS / 492-510
19 / 1 / NVKITVNGRTVRYKCNCGG / 512-530
20 / 1 / YANTQLVLQRPAAGTVHVP / 1023-1041
21 / 1 / YMDNHIPADAGRAGLFVRT / 394-412
22 / 1 / DYPPFGAGRPGQFGDIQSR / 997-1015
23 / 1 / KWQYNSPLVPRNAELGDRK / 559-577
24 / 1 / RTAKAATYQEAAVYLWNEQ / 744-762
25 / 1 / GNVKITVNGRTVRYKCNCG / 511-529
26 / 1 / TQVHCAAECHPPKDHIVNY / 1181-1199
27 / 1 / CAVHSMTNAVTIREAEIEV / 1137-1155
28 / 1 / NTTFPCSQPPCIPCCYEKE / 273-291
29 / 1 / TGYACLVGDKVMKPAHVKG / 124-142
30 / 1 / VTGYACLVGDKVMKPAHVK / 123-141
31 / 1 / CCGTAECKDKNLPDYSCKV / 871-889
32 / 1 / ITTDKVINNCKVDQCHAAV / 536-554
33 / 1 / KSDASKFTHEKPEGYYNWH / 172-190
34 / 1 / ITGTMGHFILARCPKGETL / 418-436
35 / 1 / LTMRAVPQQKPRRNRKNKK / 51-69
36 / 1 / LLSYRSMGEEPNYQEEWVT / 619-637
37 / 1 / ANVTCMVPKARNPTVTYGK / 587-605
38 / 1 / AQKKKKPGRRERMCMKIEN / 93-111
39 / 1 / ETLRMLEDNVMRPGYYQLL / 294-312
40 / 1 / EIEVHMPPDTPDRTLLSQQ / 491-509
  1. Predicted Epitopes in the Structural polyprotein Strain 37997 [Q5XXP3]

Rank / Score / Epitope / Location
1 / 1 / HPFHHEPPVIGRERFHSRP / 452-470
2 / 1 / YPPFGAGRPGQFGDIQSRT / 998-1016
3 / 1 / RPWAPRPTIQVIRPRPRPQ / 17-35
4 / 1 / TDMSCEVPACTHSSDFGGV / 1106-1124
5 / 1 / LTCSPHRQRRSTKDNFNVY / 316-334
6 / 1 / AVGMCVCARRRCITPYELT / 710-728
7 / 1 / GAGKPGDSGRPIFDNKGRV / 206-224
8 / 1 / THPFHHEPPVIGRERFHSR / 451-469
9 / 1 / TAVGMCVCARRRCITPYEL / 709-727
10 / 1 / TAPFGCQIATNPVRAVNCA / 1063-1081
11 / 1 / VTWGNNEPYKYWPQMSTNG / 653-671
12 / 1 / PRPWAPRPTIQVIRPRPRP / 16-34
13 / 1 / VTVIPNTVGVPYKTLVNRP / 813-831
14 / 1 / ATRPYLAHCPDCGEGHSCH / 336-354
15 / 1 / MRAVPQQKPRRNRKNKKQR / 53-71
16 / 1 / SLTCSPHRQRRSTKDNFNV / 315-333
17 / 1 / IEVHMPPDTPDRTLMTQQS / 492-510
18 / 1 / TMRAVPQQKPRRNRKNKKQ / 52-70
19 / 1 / NTTFPCSQPPCTPCCYEKE / 273-291
20 / 1 / CAVHSMTNAVTIREADVEV / 1137-1155
21 / 1 / YANTQLVLQRPAAGTVHVP / 1023-1041
22 / 1 / YMDSHTPADAERAGLLVRT / 394-412
23 / 1 / NWQYNSPLVPRNAELGDRK / 559-577
24 / 1 / DYPPFGAGRPGQFGDIQSR / 997-1015
25 / 1 / RQKKQAPQNDPKQKKQPPQ / 71-89
26 / 1 / HEGKVMGYACLVGDKVMKP / 119-137
27 / 1 / STQVHCAAACHPPKDHIVN / 1180-1198
28 / 1 / LSYRNMGQEPNYHEEWVTH / 620-638
29 / 1 / KSDASKFTHEKPEGYYNWH / 172-190
30 / 1 / ITGTMGHFILARCPKGETL / 418-436
31 / 1 / PFPLANVTCRVPKARNPTV / 583-601
32 / 1 / CCGTAECKDKSLPDYSCKV / 871-889
33 / 1 / AQKKKKPGRRERMCMKIEN / 93-111
34 / 1 / EIEVHMPPDTPDRTLMTQQ / 491-509
35 / 1 / TTTDKVINNCKIDQCHAAV / 536-554
36 / 1 / VNGQTVRYKCNCGGSNEGL / 517-535
37 / 1 / STLRMLEDNVMRPGYYQLL / 294-312
38 / 1 / HTAPFGCQIATNPVRAVNC / 1062-1080
  1. Predicted Epitopes in the Structural polyprotein Q5WQY5

Rank / Score / Epitope / Location
1 / 1 / YPPFGAGRPGQFGDIQSRT / 998-1016
2 / 1 / RPWTPRPTIQVIRPRPRPQ / 17-35
3 / 1 / TDMSCEVPACTHSSDFGGA / 1106-1124
4 / 1 / HPFHHDPPVIGREKFHSRP / 452-470
5 / 1 / GAGKPGDSGRPIFDNKGRV / 206-224
6 / 1 / AVGMCMCARRRCITPYELT / 710-728
7 / 1 / TAPFGCQIATNPVRAMNCA / 1063-1081
8 / 1 / VTWGNNEPYKYWPQLSTNG / 653-671
9 / 1 / PRPWTPRPTIQVIRPRPRP / 16-34
10 / 1 / LSYRNMGEEPNYQEEWVTH / 620-638
11 / 1 / VTVIPNTVGVPYKTLVNRP / 813-831
12 / 1 / VEVHMPPDTPDRTLMSQQS / 492-510
13 / 1 / ATRPYLAHCPDCGEGHSCH / 336-354
14 / 1 / KQKQQAPRNNMNQKKQPPK / 71-89
15 / 1 / VAVGMCMCARRRCITPYEL / 709-727
16 / 1 / LTCSPRRQRRSIKDNFNVY / 316-334
17 / 1 / MPISIDIPDAAFTRVVDAP / 1085-1103
18 / 1 / KWQYNSPLVPRNVELGDRK / 559-577
19 / 1 / NTTFPCSQPPCAPCCYEKE / 273-291
20 / 1 / TMRAVPQQKPRKNRKNKKQ / 52-70
21 / 1 / YMDNHMPADAERAGLLVRT / 394-412
22 / 1 / DYPPFGAGRPGQFGDIQSR / 997-1015
23 / 1 / TTTDKVINNCKVDQCHAAV / 536-554
24 / 1 / YANTQLVLQRPSAGTVHVP / 1023-1041
25 / 1 / RTAKAATYQEAAVYLWNEQ / 744-762
26 / 1 / TQVHCAAECHPPKDHIVNY / 1181-1199
27 / 1 / CAVHSMTNAVTIREAEIEV / 1137-1155
28 / 1 / TGYACLVGDKVMKPAHVKG / 124-142
29 / 1 / VTGYACLVGDKVMKPAHVK / 123-141
30 / 1 / EVEVHMPPDTPDRTLMSQQ / 491-509
31 / 1 / RYMDNHMPADAERAGLLVR / 393-411
32 / 1 / ANVTCRGPKARNPTVTYGK / 587-605
33 / 1 / KSDASKFTHEKPEGYYNWH / 172-190
34 / 1 / ITGTMGHFILARCPKGETL / 418-436
35 / 1 / AQKKKKPGRRERMCMKIEN / 93-111
36 / 1 / LLSYRNMGEEPNYQEEWVT / 619-637
  1. Predicted Epitopes in the Non-structural polyprotein Q8JUX6

Rank / Score / Epitope / Location
1 / 1 / PMFEVEPRQVTPNDHANAR / 23-41
2 / 1 / RAGAGIIETPRGAIKVTAQ / 532-550
3 / 1 / AAGDEQDEDRRRALADEVV / 2400-2418
4 / 1 / YPMFEVEPRQVTPNDHANA / 22-40
5 / 1 / FSSDTGPGHLQQKSVRQSV / 1866-1884
6 / 1 / LPLQEVPMDRFTVDMKRDV / 2139-2157
7 / 1 / VCPMRSAEDPERLANYARK / 81-99
8 / 1 / YLMSETPKVPTYRTTYPAP / 1950-1968
9 / 1 / TKHTEERPKVQVIQAAEPL / 2163-2181
10 / 1 / MLFDHNVPSRVSPREYRPS / 1642-1660
11 / 1 / RSAVPSPFQNTLQNVLAAA / 2047-2065
12 / 1 / KLSFTCRCDTVVSCEGYVV / 269-287
13 / 1 / SYLEGTRFHQTAVDMAEIY / 1532-1550
14 / 1 / AVPDTETPTFCLHTDVSCR / 124-142
15 / 1 / LHDIVTGTACRVADPLKRL / 2374-2392
16 / 1 / TEHEYVYDVDQRRCCKKEE / 663-681
17 / 1 / LALPTKRVTWVAPLGVRGA / 1179-1197
18 / 1 / TMVYNEREFVNRKLHHIAM / 625-643
19 / 1 / VSFSVCTYVPATICDQMTG / 326-344
20 / 1 / ALIALVRPRQKVVLCGDPK / 799-817
21 / 1 / DLVLTCFRGWVKQLQIDYR / 889-907
22 / 1 / RIVVNGRTQRNTNTMKNYM / 365-383
23 / 1 / PHSLVAEHRPVKGERMEWL / 1144-1162
24 / 1 / ENCQEITTDVMRQRGLEIS / 747-765
25 / 1 / ITPMASVRFFRAELCPVVQ / 1754-1772
26 / 1 / ANPRGLPGDGVCKAVYKKW / 1356-1374
27 / 1 / KSISRRCTLPVTAIVSSLH / 842-860
28 / 1 / NAAFVGQATRAGCAPSYRV / 1321-1339
29 / 1 / CATWMNMEVKIIDAVVSQK / 2346-2364
30 / 1 / RTSERVICVLGRKFRSSRA / 1267-1285
31 / 1 / IHTPFRIHHYQQCVDHAMK / 1221-1239
32 / 1 / ADNHWDNRPGGKMFGFNPE / 1080-1098
33 / 1 / SLALPTKRVTWVAPLGVRG / 1178-1196
34 / 1 / SPPKTVPCLCRYAMTPERV / 1588-1606
35 / 1 / SNPESAVAACNEFLARNYP / 1979-1997
36 / 1 / GTKHTEERPKVQVIQAAEP / 2162-2180
37 / 1 / RCATWMNMEVKIIDAVVSQ / 2345-2363
38 / 1 / QRIVVNGRTQRNTNTMKNY / 364-382
39 / 1 / IRSAVPSPFQNTLQNVLAA / 2046-2064
40 / 1 / AKTVMCGTYPVIHAVGPNF / 1388-1406
41 / 1 / DWVMSTVPVAPPRRRRGRN / 1724-1742
42 / 1 / RTEHEYVYDVDQRRCCKKE / 662-680
43 / 1 / AMDSTDADVVIYCRDKEWE / 1464-1482
44 / 1 / CSTDLTEGRRGKLSIMRGK / 213-231
45 / 1 / NITPMASVRFFRAELCPVV / 1753-1771
46 / 1 / KQKTHTVYKRPDTQSIQKV / 425-443
47 / 1 / LDIGSAPARRMMSDRKYHC / 62-80
48 / 1 / TAMDSTDADVVIYCRDKEW / 1463-1481
49 / 1 / TQMRELPTLDSAVFNVECF / 2073-2091
50 / 1 / TAKTVMCGTYPVIHAVGPN / 1387-1405
51 / 1 / GLTRKGVYAVRQKVNENPL / 919-937
52 / 1 / LYLMSETPKVPTYRTTYPA / 1949-1967
53 / 1 / RKDMEDEKLLGVRERTLTC / 399-417
54 / 1 / AYWVGFDTTPFMYNAMAGA / 173-191
55 / 1 / NPPYHEFAYEGLKIRPACP / 693-711
56 / 1 / LAAGDEQDEDRRRALADEV / 2399-2417
57 / 1 / WSTCSDTDDELRLDRAGGY / 1846-1864
58 / 1 / DRTSERVICVLGRKFRSSR / 1266-1284
59 / 1 / DRAGAGIIETPRGAIKVTA / 531-549
60 / 1 / GKLSFTCRCDTVVSCEGYV / 268-286
61 / 1 / ATMVYNEREFVNRKLHHIA / 624-642
62 / 1 / SIDCDVVRVHPDSSLAGRK / 1503-1521
63 / 1 / ILDIGSAPARRMMSDRKYH / 61-79
64 / 1 / CTHSGRAGRYAVEAYDGRV / 586-604
65 / 1 / SCHLPTGTRFKFGAMMKSG / 2276-2294
66 / 1 / SDWVMSTVPVAPPRRRRGR / 1723-1741
67 / 1 / IFSSDTGPGHLQQKSVRQS / 1865-1883
68 / 1 / KENCQEITTDVMRQRGLEI / 746-764
69 / 1 / HYEGKMRTTNEYNKPIVVD / 860-878
70 / 1 / LLPLQEVPMDRFTVDMKRD / 2138-2156
71 / 1 / NKQICVTTRRIEDFNPTTN / 1117-1135
72 / 1 / ISIDCDVVRVHPDSSLAGR / 1502-1520
73 / 1 / EARDAEKEAEEEREAELTL / 489-507
74 / 1 / ALPPLQAAQEDVQVEIDVE / 509-527
75 / 1 / PVPSDLDADAPALEPALDD / 1688-1706
76 / 1 / ILHDIVTGTACRVADPLKR / 2373-2391
77 / 1 / YSPEVALNEICTRMYGVDL / 1047-1065
78 / 1 / LNAAFVGQATRAGCAPSYR / 1320-1338
79 / 1 / PCDRVLFSVGSTLYPESRK / 235-253
80 / 1 / VTQMRELPTLDSAVFNVEC / 2072-2090
81 / 1 / MAGICSHQMTFDTFQNKAN / 993-1011
82 / 1 / NIHTPFRIHHYQQCVDHAM / 1220-1238
83 / 1 / CGIHRELVRRLNAVLLPNV / 2187-2205
84 / 1 / SRSNFEKLRGPVVTLYGGP / 2455-2473
85 / 1 / YTMWPKQTEANEQVCLYAL / 1550-1568
86 / 1 / LCGIHRELVRRLNAVLLPN / 2186-2204
87 / 1 / TRTEGKLVWKTLSGDPWIK / 950-968
  1. Predicted Epitopes in the Non-structural polyprotein Q5XXP4

Rank / Score / Epitope / Location
1 / 1 / PMFEVEPRQVTPNDHANAR / 23-41
2 / 1 / DTGPGHLQQRSVRQTVLPV / 1869-1887
3 / 1 / RAGAGIIETPRGAIKVTAQ / 532-550
4 / 1 / AAGDEQDDDRRRALADEVV / 2400-2418
5 / 1 / SDTGPGHLQQRSVRQTVLP / 1868-1886
6 / 1 / YPMFEVEPRQVTPNDHANA / 22-40
7 / 1 / LPLQEVPMDRFTVDMKRDV / 2139-2157
8 / 1 / VCPMRSAEDPERLANYARK / 81-99
9 / 1 / YLMSETPKVPTYRTTYPAP / 1950-1968
10 / 1 / SYLEGTRFHQTAVDMAEVY / 1532-1550
11 / 1 / TKHTEERPKVQVIQAAEPL / 2163-2181
12 / 1 / RSAVPSPFQNTLQNVLAAA / 2047-2065
13 / 1 / KLSFTCRCDTVVSCEGYVV / 269-287
14 / 1 / RTSERVVCVLGRKFRSSRA / 1267-1285
15 / 1 / LYDTVAGTACRVADPLKRL / 2374-2392
16 / 1 / AVPDAETPTFCLHTDVSCR / 124-142
17 / 1 / TEHEYVYDVDQRRCCKKEE / 663-681
18 / 1 / VSFSVCTYVPATICDQMTG / 326-344
19 / 1 / ALIALVRPRQKVVLCGDPK / 799-817
20 / 1 / DLVLTCFRGWVKQLQIDYR / 889-907
21 / 1 / KKFACNQEYWKEFAASPIR / 2092-2110
22 / 1 / MLFDHNVPSRVSPREYKSP / 1642-1660
23 / 1 / PHSLVAEHRPVKGERMEWL / 1144-1162
24 / 1 / LAAGDEQDDDRRRALADEV / 2399-2417
25 / 1 / ANPRGLPGDGVCKAVYKKW / 1356-1374
26 / 1 / KSISRRCTLPVTAIVSSLH / 842-860
27 / 1 / NPPYHEFAYEGLRIRPACP / 693-711
28 / 1 / TMVYNEREFVNRKLHHIAL / 625-643
29 / 1 / NAAFVGQATRAGCAPSYRV / 1321-1339
30 / 1 / CATWMNMEVKIIDAVVSQK / 2346-2364
31 / 1 / IHTPFRIHHYQQCVDHAMK / 1221-1239
32 / 1 / RIVVNGRTQRNTNTMKNYL / 365-383
33 / 1 / ADNHWDNRPGGKMFGFNPE / 1080-1098
34 / 1 / LVLPTKRVTWVAPLGIRGA / 1179-1197
35 / 1 / DRTSERVVCVLGRKFRSSR / 1266-1284
36 / 1 / SPPKTVPCLCRYAMTPERV / 1588-1606
37 / 1 / NVLPMASVRFFRADLHSIV / 1753-1771
38 / 1 / SNPESAVAACNEFLARNYP / 1979-1997
39 / 1 / GTKHTEERPKVQVIQAAEP / 2162-2180
40 / 1 / RCATWMNMEVKIIDAVVSQ / 2345-2363
41 / 1 / QRIVVNGRTQRNTNTMKNY / 364-382
42 / 1 / IRSAVPSPFQNTLQNVLAA / 2046-2064
43 / 1 / AKTVMCGTYPVIHAVGPNF / 1388-1406
44 / 1 / NLVLPTKRVTWVAPLGIRG / 1178-1196
45 / 1 / RTEHEYVYDVDQRRCCKKE / 662-680
46 / 1 / CSTDLTEGRRGKLSIMRGK / 213-231
47 / 1 / KQKTHTVYKRPDTQSIQKV / 425-443
48 / 1 / LDIGSAPARRMMSDRKYHC / 62-80
49 / 1 / ENCQEISTDVMRQRNLEIS / 747-765
50 / 1 / TQMRELPTLDSAVFNVECF / 2073-2091
51 / 1 / PAPSDLEADAPIPEPTPDD / 1688-1706
52 / 1 / TAKTVMCGTYPVIHAVGPN / 1387-1405
53 / 1 / GLTRKGVYAVRQKVNENPL / 919-937
54 / 1 / LYLMSETPKVPTYRTTYPA / 1949-1967
55 / 1 / ALDSTDADVVIYCRDKEWE / 1464-1482
56 / 1 / VSDWVMNTAPVAPPRRRRG / 1722-1740
57 / 1 / DRAGAGIIETPRGAIKVTA / 531-549
58 / 1 / AEAIQMRTQVELLDEHISV / 1486-1504
59 / 1 / TALDSTDADVVIYCRDKEW / 1463-1481
60 / 1 / GKLSFTCRCDTVVSCEGYV / 268-286
61 / 1 / ATMVYNEREFVNRKLHHIA / 624-642
62 / 1 / EKEAEEEREAELTREALPP / 494-512
63 / 1 / NKQICVTTRRIEDFNPNTN / 1117-1135
64 / 1 / TNKQICVTTRRIEDFNPNT / 1116-1134
65 / 1 / ILDIGSAPARRMMSDRKYH / 61-79
66 / 1 / MAGICNHQVTFDTFQNKAN / 993-1011
67 / 1 / AYWIGFDTTPFMYNAMAGA / 173-191
68 / 1 / SCHLPTGTRFKFGAMMKSG / 2276-2294
69 / 1 / KAVHSRYEVQGISVVVMSM / 2431-2449
70 / 1 / AFKEDRAYSPEVALNEICT / 1040-1058
71 / 1 / AEKEAEEEREAELTREALP / 493-511
72 / 1 / IMAGICNHQVTFDTFQNKA / 992-1010
73 / 1 / HYEGKMRTTNEYNKPIVVD / 860-878
74 / 1 / YSYLEGTRFHQTAVDMAEV / 1531-1549
75 / 1 / LLPLQEVPMDRFTVDMKRD / 2138-2156
76 / 1 / LNAAFVGQATRAGCAPSYR / 1320-1338
77 / 1 / PCDRVLFSVGSTLYPESRK / 235-253
78 / 1 / VTQMRELPTLDSAVFNVEC / 2072-2090
79 / 1 / NIHTPFRIHHYQQCVDHAM / 1220-1238
80 / 1 / CGIHRELVRRLNAVLLPNV / 2187-2205
81 / 1 / SRSNFEKLRGPVVTLYGGP / 2455-2473
82 / 1 / TNPPYHEFAYEGLRIRPAC / 692-710
83 / 1 / YTMWPKQTEANEQVCLYAL / 1550-1568
84 / 1 / KTCTHSGRAGRYAVEAYDG / 584-602
85 / 1 / GNVLPMASVRFFRADLHSI / 1752-1770
86 / 1 / FKKFACNQEYWKEFAASPI / 2091-2109
87 / 1 / RKDMEDEKLLGIRERTLTC / 399-417
88 / 1 / LCGIHRELVRRLNAVLLPN / 2186-2204
89 / 1 / TRTEGKLVWKTLSGDPWIK / 950-968