Table S5. Reuse number analysis identified by each breakpoint of inversions during X chromosome evolutionA.GRIMMsoftware; B.DCJ model; C.HP model; D.Inversion model. (B-D models using UniMog software).

A. GRIMM software

Syntenic
Block / Breakpoint of inversion / Syntenic
Block / Breakpoint of inversion
D / P / D / P
1 / D / X19, X23, X25, X30, / X21, / 21 / D / X14, / X15,
P / X1, X12, / P / X36,
2 / D / X1, X6, / 22 / D / X13,
P / X2, X12, / X1 / P / X14,
3 / D / X2, X10, / X1, X12, / 23 / D / X14,
P / X6, / X2, X23, / P / X15, / X13,
4 / D / X10, X25, X30, / X2, X23, / 24 / D / X37, X38, / X15, X36,
P / X6, / P / X14, X16,
5 / D / X6, / 25 / D / X3, / X11,
P / X10, / P / X37, / X36,
6 / D / X10, X12, / 26 / D / X11, / X7,
P / X20, X24, / X27, X30, / P / X3,
7 / D / X20, / X22, / 27 / D / X38,
P / X21, X23, / P / X7,
8 / D / X21, / 28 / D / X3, / X11,
P / X17, / P / X38,
9 / D / X17, / 29 / D / X7,
P / X28, X34, / X19, X35, / P / X3,
10 / D / X19, X21, / 30 / D / X32, X35, / X31, X34,
P / X29, / P / X7, X11,
11 / D / X29, X33, / 31 / D / X13, X18, X27, X31,
P / X22, X26, / X29, / P / X32, / X31,
12 / D / X22, X33, / X29, / 32 / D / X9, X43, / X32,
P / X26, / X20, X22, / P / X5, X9, X18, X28, X32, X33,
13 / D / X24, / X20, X27, X30, / 33 / D / X37,
P / X24, / P / X43, / X9, X34, X35,
14 / D / X24, / 34 / D / X43,
P / X13, X15, X16, X18, X27, X31, / P / X37,
15 / D / X5, X8, X33, / 35 / D
P / X39, / X4, X18, X26, X28, / P / X43,
16 / D / X40, / X39, / 36 / D
P / X39, / X4, X17, X26, / P
17 / D / X4, X41, / X8, X16, X40, / 37 / D / X8, X44,
P / X40, / X39, / P
18 / D / X42, / X41, / 38 / D / X44,
P / X4, X41, / X17, X40, / P / X8, X44, / X16,
19 / D / X42, / 39 / D / X5, / X25,
P / X42, / X41, / P / X44,
20 / D / X36, X38, / Tel / p / X19, X28, X34, X35,
P / X42, / q / X5, X9, X25,

B. DCJ model

Syntenic
Block / Breakpoint of inversion / Syntenic
Block / Breakpoint of inversion
D / P / D / P
1 / D / X18, / X20,X24, X34, / 21 / P / X36, / X37,
P / X1, / D / X9,
2 / D / X1,X4, / 22 / P / X9,
P / X1, / D / X9,
3 / D / X1, / 23 / P / X9, X12,
P / X3,X23, X24, / D / X6, X12,
4 / D / X3, X23, / 24 / P / X6,
P / X3, / D / X35, X37,
5 / D / X3, / 25 / P / X35,
P / X2, X4, / D / X13,X14, X15,
6 / D / X2, / 26 / P / X13,
P / X19, X34, / X26, / D / X15,
7 / D / X19,X25, / 27 / P / X15,
P / X20, / X24, X34, / D / X36, X37,
8 / D / X20, / 28 / P / X36,
P / X5, / D / X13, / X14,
9 / D / X5, X8, / 29 / P / X13,
P / X21,X28, X29, / X18, / D / X14, / X15,
10 / D / X18, X19, / 30 / P / X14,
P / X30, / D / X31,
11 / D / X30, X32, / 31 / P / X31, X33,
P / X22, X30, / D / X7,X8, X17, X26,X27, / X11, X33,
12 / D / X25, X32, / X22, X30, / 32 / P / X17, / X16,X21, X32,
P / X19,X25, / D / X10, X33,X42, / X29, X31,
13 / D / X26, X34, / X19,X27, / 33 / P / X10,X16,X42, / X29,
P / X27, / D / X37, / X35,
14 / D / X27, / 34 / P / X35,
P / X7,X17, X26, / X33, / D / X42,
15 / D / X16, X32, / 35 / P / X42,
P / X5, X22,X38, / X8, X11, X12,X17, X21, / D / X28,
16 / P / X5, X22,X38, / X25, / 36 / P / X29, / X28, X31,
D / X39, / X38, / D
17 / P / X39, / X38, / 37 / P
D / X40, / X7, X39, / D / X12, X43, / X6,
18 / P / X8, X40, / X7, X39, / 38 / P / X43, / X6,
D / X41, / X40, / D / X43,
19 / P / X41, / X40, / 39 / P / X43,
D / X41, / D / X16, X24, / X10,
20 / P / X41, / Tel / p / X18, X21, X28,
D / X36, / q / X10,

C. HP model

Syntenic
Block / Breakpoint of inversion / Syntenic
Block / Breakpoint of inversion
D / P / D / P
1 / D / X19, X24, X29, / X21, / 21 / P / X37, / X38,
P / X8, / D / X11,
2 / D / X8, / X10, / 22 / P / X11, / X14, X16,
P / X1, X17, / D / X9,
3 / D / X1, / 23 / P / X9, / X11,
P / X15, X22, / X8, X24, / D / X13, X16,
4 / D / X15, X22, / X17, / 24 / P / X13,
P / X10, / D / X36, X38,
5 / D / X10, / X15, / 25 / P / X36,
P / X17, / X1, / D / X5, X7,
6 / D / X1, X8, X10, X15, X17, X25, / 26 / P / X5,
P / X20, / X27, X29, / D / X6, / X7,
7 / D / X20, / X23, / 27 / P / X6,
P / X21, X24, X29, / D / X37, X38,
8 / D / X21, / 28 / P / X37,
P / X3, / D / X7, / X5,
9 / D / X3, X12, X16, / X13, / 29 / P / X5,
P / X28, X34, / X19, X35, / D / X6,
10 / D / X19, X21, / 30 / P / X6, X7,
P / X32, / D / X30, X31,
11 / D / X32, / 31 / P / X30, X31,
P / X23, X26, X33, / X32, / D / X27, X30, X18, / X9, X34, X35,
12 / D / X23, X33, / X32, / 32 / P / X2, / X18, X28, X33,
P / X26, / X20, X23, / D / X4, X35, X43, / X2,
13 / D / X20, X25, X29, / 33 / P / X35, X43, / X2,
P / X25, / X27, / D / X38, / X36,
14 / D / X25, / 34 / P / X36,
P / X27, X30, X18, / X9, X11, X14, / D / X43,
15 / D / X2, / X3,X18, X33, / 35 / P / X43,
P / X4, X12, X39, / X26, X28, / D / X31, X34,
16 / P / X39, / X3, X26, / 36 / P / X31,
D / X40, / X39, / D
17 / P / X40, / X39, / 37 / P
D / X14, X41, / X40, / D / X44, / X12,
18 / P / X14, X41, / X16, X40, / 38 / P / X44, / X12, X13,
D / X42, / X41, / D / X44,
19 / P / X42, / X41, / 39 / P / X44,
D / X42, / D / X4, X22, X24,
20 / P / X42, / Tel / p / X19, X28, X34,
D / X37, / q / X4, X22,

D. Inversion model.

Syntenic
Block / Breakpoint of inversion / Syntenic
Block / Breakpoint of inversion
D / P / D / P
1 / D / X19, X24, X27, / X21, X31, / 21 / P / X37, / X38,
P / X1, X3, X9, / D / X11, X13,
2 / D / X1, / X4, / 22 / P / X11,
P / X3, / X1, / D / X7,
3 / D / X6, / X1, X4, X9, / 23 / P / X7, / X13,
P / X6, X24, / D / X11,
4 / D / X27, / X6, X9, X24, / 24 / P / X13, X14, / X11,
P / X4, / D / X36, X38,
5 / D / X4, X6, / 25 / P / X36,
P / X9, / X3, / D / X5, / X10, X17,
6 / D / X3, / 26 / P / X5,
P / X20, X25, X26, X31, / D / X17,
7 / D / X20, X28, / X23, / 27 / P / X17,
P / X21, X24, / X31, / D / X37, X38,
8 / D / X21, / 28 / P / X37,
P / X2, / D / X5, X10,
9 / D / X2, / X15, / 29 / P / X5,
P / X22, X29, / X19, X33, / D / X10, / X17,
10 / D / X19, X21, / 30 / P / X10,
P / X32, / D / X30, X34,
11 / D / X35, / X32, / 31 / P / X30,
P / X32, / X28, / D / X18, X34, / X7, X26, X30,
12 / D / X32, X35, / X28, / 32 / P / X8, / X18, X22, X35,
P / X20, X23, / D / X12, X43, X33, / X8, X34,
13 / D / X25, X31, / X20, / 33 / P / X43, X33, / X8,
P / X26, / X25, / D / X38, / X36,
14 / D / X7, X25, / 34 / P / X36,
P / X14, X18, / X13, X16, X26, X30, / D / X43,
15 / D / X8, X12, / X18, X22, X35, / 35 / P / X43,
P / X16, X23, X39, X28, / X2, X15, / D / X29,
16 / P / X23, X39, / X2, / 36 / P / X29, X33, X34,
D / X40, / X39, / D
17 / P / X40, / X39, / 37 / P
D / X41, X15, X16, / X40, / D / X44, / X14, X16,
18 / P / X41, X15, / X40, / 38 / P / X44, / X14,
D / X42, / X41, / D / X44,
19 / P / X42, / X41, / 39 / P / X44,
D / X42, / D / X12, X27,
20 / P / X42, / Tel / p / X19, X22, X29,
D / X37, / q / X12, X27,

D: Distal breakpoint to centromere; P: proximal breakpoint to centromere; Tel: Telomere; p: short arm of chromosome; q: long arm of chromosome.

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