Turned OFF at DN1/DN2 transition

Protein Class/Family / Transcription factor genes
Zinc Finger / C2H2 type / Zfp46, 1190001I08Rik, 4930566A11Rik, Zfp105, Klf5, Egr1, Klf4, Prdm1
C4 type / Nr6a1, Nr4a1
C-x8-C-x5-C-x3-H type / Zfp36
GATA type / Gata6
Helix-turn-helix / Homeobox / Pax5, Pax6, Hoxa4, Atbf1, Pbx3, Pbx1,
Hlx, Hoxa9, Hoxa2
HFS/ETS DNA binding / Spib
Interferon regulatory factor / Irf7, Irf4
Zn-binding protein, LIM / Lmo2
Ankyrin / Bcl3, Ankrd2, 4921515A04Rik
bZIP transcription factor / Cebpd, Cebpa, Atf3, Batf, Fos, Junb
Helix-loop-helix / Idb3, Clock, Lmyc1
High mobility group proteins (HMG) / Hmga2, Lef1
IPT/TIG / Relb, Rbpsuhl
Others / Tnfrsf5, Dri1, Hipk2, Eif2ak3, C2ta, Lisch7-pending, Tceb2, Nab2, 4930565N07Rik

Turned ON at DN1/DN2 transition

Protein Class/ Family / Transcription factor genes
Zinc Finger / C2H2 type / Hivep2, Ikbkg, Zfp26, Zfp260, Zfp97, Zfp358, Myst2
C4 type / Nr1h2
PHD finger / Mllt10, Tcf20
Helix-turn-helix / Homeobox / Pknox1, Hoxa7, Dlx6
HFS/ETS DNA binding / Ets2
Zn-binding protein, LIM / Fhl2
Ankyrin / 4833408P15Rik, Nfkbie, Rfxank, Pla2g6, Bard1
Helix-loop-helix / Mad3, Tal1
High mobility group proteins (HMG) / Sox3, Sox7
IPT/TIG / Nfatc2
Others / Mybl2, Rfx2, Tle4, Dedd, Atm, Bn51t-pending, Sap18

Turned OFF at DN2/DN3 transition

Protein Class/ Family / Transcription factor genes
Zinc Finger / C2H2 type / Zfp358, Zfp288, Gfi1b, Zfp26, Zfp422
RING / 2610110L04Rik
PHD finger / Mllt10
MYND type / Deaf1
Helix-turn-helix / Homeobox / Hoxa7, Hoxd3, Hoxb8, Hoxa6, Dlx6
HSF/ETS DNA-binding / Sfpi1, Elk3
Interferon regulatory factor / Irf5
Zn-binding protein, LIM / Lmo1, Creg
Ankyrin / Nfkbie
bZIP transcription factor / Nfil3, 9130211I03Rik, 9130025P16Rik, Mafg, C630022N07Rik
Helix-loop-helix / Lyl1, Tal1, Bhlhb2
High mobility group proteins (HMG) / Sox3, Sox7
IPT/TIG / Nfatc2
Others / Tle4, Dedd, Rab25, Rfx2, Ctbp2, Pou2af1

Turned ON at DN2/DN3 transition

Protein Class/Family / Transcription factor genes
Zinc Finger / C2H2 type / Egr1, Zfp105, Zfp46, Zfp60, Zfy-2
C4 type / Nr1d1, Nr4a1, Esr1, Nr3c1
Helix-turn-helix / Homeobox / Pax6, Pbx3, Pou6f1
HFS/ETS DNA binding / Spib
Ankyrin / Trpc4
bZIP transcription factor / Creb1
Helix-loop-helix / Idb3, Hes5
High mobility group proteins (HMG) / Sox15, Lef1
IPT/TIG / Rbpsuhl
Others / Trp63, Kcnh2 (PAS domain), Tceb2, Nab2

Turned OFF at DN3/preDP transition

Protein Class/Family / Transcription factor genes
Zinc Finger / C2H2 type / Zfp46, Zfp61, Zfp29, Zfp99, Zfp385, 1110037D23Rik, Zfp60, Zfy-2
C4 type / Nr2c1, Nr1d1, Nr1h2, Nr3c1, Esr1
GATA type / Gata1
Helix-turn-helix / Homeobox / Hhex, Pax6, Pbx3, Tcf1
HFS/ETS DNA binding / Spib
Ankyrin / 4833408P15Rik, Trpc4
bZIP transcription factor / Ddit3, Nfe2, Creb1
Helix-loop-helix / Hes5, Nmyc1
High mobility group proteins (HMG) / Sox15
Others / Per1 (PAS domain), Tbx6, Atm, Madh7

Turned ON at DN3/preDP transition

Protein Class/Family / Transcription factor genes
Zinc Finger / C2H2 type / Zfp26, Zfp422, Znfn1a1, Prdm1, Egr2
C4 type / Nr1h4, Rorc
RING / 2610110L04Rik
PHD finger / Mllt10
MYND type / Deaf1
Helix-turn-helix / Homeobox / Hoxd3, Irx3, Dlx6, Hoxb8, Pou2f3, Hoxb7
HFS/ETS DNA binding / Ets1
Helix-loop-helix / Hand1, Dri1
High mobility group proteins (HMG) / Sox3
Others / Mcmd6, C630022N07Rik, D930018N21Rik, DP1, Pou2af1, Ptrf

Turned OFF at preDP/smDP transition

Protein Class/Family / Transcription factor genes
Zinc Finger / C2H2 type / Klf9, Zfp239
C4 type / Nr1h4
RING / 2610110L04Rik
Helix-turn-helix / Homeobox / Hoxd3, Irx3, Pou2f3, Hoxb8
Helix-loop-helix / Hand1, Hes1
High mobility group proteins (HMG) / Sox3
Others / Gcn5l2, Nfix, Mcmd6, Bard1, Rbpsuhl, Tmpo, Bn51t-pending, Htr5a, Pou2af1, Ptrf

Turned ON at preDP/smDP transition

Protein Class/Family / Transcription factor genes
Zinc Finger / C2H2 type / 4930566A11Rik, Mtf1, Sp4, Zfp46, Zfp29, D11Ertd714e, Zfp99, Zfp288, Zfp385, Zfp358, Zfp61, 1110037D23Rik
C4 type / Nr2c1, Nr1d1, Nr3c1, Rora, Rara
C-x8-C-x5-C-x3-H type / Zfp36
GATA type / Gata6
RING / Rnf4
PHD-finger / Phf1
Helix-turn-helix / Homeobox / Hhex, Mrg2, Tcf1, Hoxb8
Interferon regulatory factor / Irf6
HFS/ETS DNA binding / Elf4, Elk3
Transcription factor E2F/dimerisation partner (TDP) / E2f3, E2f5
bZIP transcription factor / Ddit3, Nfil3, Creb1, Junb
Helix-loop-helix / PAS domain / Npas1, Arnt, Clock, Per1
IPT/TIG / Nfatc3
Others / Tle1, Dedd, Mllt2h, Rfx2, Atm, Zfp276, C2ta, Dusp16, Tbx6, Mef2b, Pparbp