Title:长程阻错的统计物理理论

Author(s):周海军

Source:物理 35 (3): 193-196 (2006)

Cited in:

Title:Dynamic pattern evolution on scale-free networks

Author(s):Zhou HJ, Lipowsky R

Source:PROCEEDINGS OF THE NATIONALACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (29): 10052-10057 JULY 2005

Cited in:

  1. Castellano C, Pastor-Satorras R

Zero temperature Glauber dynamics on complex networks

JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT : Art. No. P05001 MAY 2006

Title: Long-range frustration in a spin-glass model of the vertex-cover problem

Author(s): Zhou HJ

Source: PHYSICAL REVIEW LETTERS 94 (21): Art. No. 217203 JUN 2005

Cited in:

  1. Weigt, M, Zhou, HJ

Message passing for vertex covers

PHYSICAL REVIEW E 74 (4): Art. NO 046110 OCT 2006

  1. Montanari, A, Semerjian, G

On the dynamics of the glass transition on Bethe lattices

JOURNAL OF STATISTICAL PHYSICS 124 (1): 103-189 JUL 2006

  1. Fay CW, Liu JW, Duxbury PM

Maximum independent set on diluted triangular lattices

PHYSICAL REVIEW E 73 (5): Art. No. 056112 Part 2 MAY 2006

  1. Zhou HJ
    Long-range frustration in finite connectivity spin glasses: a mean-field theory and its application to the random K-satisfiability problem

NEW JOURNAL OF PHYSICS 7: Art. No. 123 MAY 18 2005

Title:Long-range frustration in finite connectivity spin glasses: a mean-field theory and its application to the random K-satisfiability problem

Author(s):Zhou HJ

Source:NEW JOURNAL OF PHYSICS 7: Art. No. 123 MAY 18 2005

Cited in:

  1. Zhou HJ
    Long-range frustration in a spin-glass model of the vertex-cover problem

PHYSICAL REVIEW LETTERS 94 (21): Art. No. 217203 JUN 3 2005

Title: Hierarchical chain model of spider capture silk elasticity

Author(s): Zhou HJ

Source: PHYSICAL REVIEW LETTERS 94 (02): Art. No. 028104 JAN2005

Cited in:

  1. Elices, M, Guinea, GV, Plaza, GR, Real, JI, Perez-Rigueiro, J

Example of microprocessing in a natural polymeric fiber: Role of reeling stress in spider silk

JOURNAL OF MATERIALS RESEARCH 21 (8): 1931-1938 AUG 2006

Title:Network Brownian motion: A new method to measure vertex-vertex proximity and to identify communities and subcommunities

Author(s):Zhou HJ, Lipowsky R

Source:COMPUTATIONAL SCIENCE - ICCS 2004, PT 3, PROCEEDINGS LECTURE NOTES IN COMPUTER SCIENCE 3038: 1062-1069 2004

Cited in:

  1. Newman, MEJ

Finding community structure in networks using the eigenvectors of matrices

PHYSICAL REVIEW E 74 (3): Art. NO 036104 SEP 2006

  1. Danon L, Diaz-Guilera A, Duch J, et al.
    Comparing community structure identification
    JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT : Art. No. P09008 SEP 2005
  2. Zhou HJ, Lipowsky R
    Dynamic pattern evolution on scale-free networks
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (29): 10052-10057 JUL 19 2005
  3. Itzkovitz S, Levitt R, Kashtan N, et al.
    Coarse-graining and self-dissimilarity of complex networks
    PHYSICAL REVIEW E 71 (1): Art. No. 016127 Part 2 JAN 2005
  4. Danon L, Diaz-Guilera A, Arenas A

Effect of size heterogeneity on community identification in complex networks

e-print: physics/0601144

Title:Maximal matching on random graphs

Author(s):Zhou HJ

Source:E-PRINT: COND-MAT/0309348, 2003

Cited in:

  1. Zdeborova L, Mezard M
    The number of matchings in random graphs
    JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT : Art. No. P05003 MAY 2006
  2. Zhou HJ
    Long-range frustration in a spin-glass model of the vertex-cover problem
    PHYSICAL REVIEW LETTERS 94 (21): Art. No. 217203 JUN 3 2005
  3. Zhou HJ
    Long-range frustration in finite connectivity spin glasses: a mean-field theory and its application to the random K-satisfiability problem
    NEW JOURNAL OF PHYSICS 7: Art. No. 123 MAY 18 2005
  4. Ramezanpour A
    Ising model on the edge-dual of random networks
    PHYSICAL REVIEW E 69 (6): Art. No. 066114 Part 2 JUN 2004

Title:Distance, dissimilarity index, and network community structure

Author(s):Zhou HJ

Source:PHYSICAL REVIEW E 67 (6): Art. No. 061901 Part 1, JUN 2003

Cited in:

  1. Newman, MEJ

Finding community structure in networks using the eigenvectors of matrices

PHYSICAL REVIEW E 74 (3): Art. NO 036104 SEP 2006

2. Vragovic, I, Louis, E

Network community structure and loop coefficient method

PHYSICAL REVIEW E 74 (1): Art. NO 016105 JUL 2006

  1. Zhang, P, Li, MH, Wu, JS, Di, ZR, Fan, Y

The analysis and dissimilarity comparison of community structure

PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS 367: 577-585 JUL 15 2006

  1. Boccaletti S, Latora V, Moreno Y, et al.
    Complex networks: Structure and dynamics
    PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS 424 (4-5): 175-308 FEB 2006
  1. Son SW, Jeong H, Noh JD
    Random field Ising model and community structure in complex networks
    EUROPEAN PHYSICAL JOURNAL B 50 (3): 431-437 APR 2006
  2. Pollner P, Palla G, Vicsek T
    Preferential attachment of communities: The same principle, but a higher level
    EUROPHYSICS LETTERS 73 (3): 478-484 FEB 2006
  3. Derenyi I, Palla G, Vicsek T
    Clique percolation in random networks
    PHYSICAL REVIEW LETTERS 94 (16): Art. No. 160202 APR 29 2005
  4. Massen CP, Doye JPK
    Identifying communities within energy landscapes
    PHYSICAL REVIEW E 71 (4): Art. No. 046101 Part 2 APR 2005
  5. Kim DH, Rodgers GJ, Kahng B, et al.
    Modelling hierarchical and modular complex networks: division and independence
    PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS 351 (2-4): 671-679 JUN 15 2005
  6. Itzkovitz S, Alon U
    Subgraphs and network motifs in geometric networks
    PHYSICAL REVIEW E 71 (2): Art. No. 026117 Part 2 FEB 2005
  7. Itzkovitz S, Levitt R, Kashtan N, et al.
    Coarse-graining and self-dissimilarity of complex networks
    PHYSICAL REVIEW E 71 (1): Art. No. 016127 Part 2 JAN 2005
  8. Costa LD
    The hierarchical backbone of complex networks
    PHYSICAL REVIEW LETTERS 93 (9): Art. No. 098702 AUG 27 2004
  9. Fortunato S, Latora V, Marchiori M
    Method to find community structures based on information centrality
    PHYSICAL REVIEW E 70 (5): Art. No. 056104 Part 2 NOV 2004
  10. Zhou HJ, Lipowsky R
    Network Brownian motion: A new method to measure vertex-vertex proximity and to identify communities and subcommunities
    LECTURE NOTES IN COMPUTER SCIENCE 3038: 1062-1069 2004
  11. Boss M, Summer M, Thurner S
    Contagion flow through banking networks
    LECTURE NOTES IN COMPUTER SCIENCE 3038: 1070-1077 2004
  12. Castellano C, Cecconi F, Loreto V, et al.
    Self-contained algorithms to detect communities in networks
    EUROPEAN PHYSICAL JOURNAL B 38 (2): 311-319 MAR 2004
  13. Newman MEJ
    Detecting community structure in networks
    EUROPEAN PHYSICAL JOURNAL B 38 (2): 321-330 MAR 2004
  14. J. D. Noh and H. Rieger (2004).
    Phys. Rev. E 69: 036111.
    Constrained spin-dynamics description of random walks on hierarchical scale-free network
  15. Mitre J, Navarro-Moldes L

P2P architecture for scientific collaboration

Proceedings of the 13th IEEE International Workshops on Enabling Technologies: Infrastructure for Collaboartive Enterprises (WETICE’04), 99-100 (2004)

  1. Zhou HJ
    Network landscape from a Brownian particle's perspective
    PHYSICAL REVIEW E 67 (4): Art. No. 041908 Part 1 APR 2003
  2. Fernandez P, Sole RV

The role of computation in complex regulatory networks

e-print: q-bio/0311012

  1. Zhang P, Li M. Wu J, Di Z, Fan Y

The community structure of econophysicist collaboration networks

e-print: physics/0505064

  1. Danon L, Diaz-Guilera A, Duch J, Arenas A

Comparing community structure identification

e-print: cond-mat/0505245

Title:Network landscape from a Brownian particle's perspective

Author(s):Zhou HJ

Source:PHYSICAL REVIEW E 67 (4): Art. No. 041908 Part 1, APR 2003

Cited in:

  1. Vragovic, I, Louis, E

Network community structure and loop coefficient method

PHYSICAL REVIEW E 74 (1): Art. NO 016105 JUL 2006

  1. Gustafsson, M, Hornquist, M, Lombardi, A

Comparison and validation of community structures in complex networks

PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS 367:559-576 JUL 15, 2006

  1. Boccaletti S, Latora V, Moreno Y, et al.

Complex networks: Structure and dynamics

PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS 424 (4-5):

175-308 FEB 2006

  1. Xuan Q, Li YJ, Wu TJ
    Growth model for complex networks with hierarchical and modular structures
    PHYSICAL REVIEW E 73 (3): Art. No. 036105 Part 2 MAR 2006
  2. Kim DH, Rodgers GJ, Kahng B, et al.
    Modelling hierarchical and modular complex networks: division and independence
    PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS 351 (2-4): 671-679 JUN 15 2005
  3. Noh JD, Rieger H
    Random walks on complex networks
    PHYSICAL REVIEW LETTERS 92 (11): Art. No. 118701 MAR 19 2004
  4. Fortunato S, Latora V, Marchiori M
    Method to find community structures based on information centrality
    PHYSICAL REVIEW E 70 (5): Art. No. 056104 Part 2 NOV 2004
  5. Zhou HJ, Lipowsky R
    Network Brownian motion: A new method to measure vertex-vertex proximity and to identify communities and subcommunities
    LECTURE NOTES IN COMPUTER SCIENCE 3038: 1062-1069 2004
  6. Tadic B
    Guided search and distribution of information flow on complex graphs
    LECTURE NOTES IN COMPUTER SCIENCE 3038: 1086-1093 2004
  7. Zhou HJ
    Distance, dissimilarity index, and network community structure
    PHYSICAL REVIEW E 67 (6): Art. No. 061901 Part 1 JUN 2003
  8. Rodriguez MA, Bollen J

Simulating network influence algorithms using particle-swarms: PageRank and PageRank-Priors

e-print: cs.DS/0602002

  1. Danon L, Diaz-Guilera A, Arenas A

Effect of size heterogeneity on community identification in complex networks

e-print: physics/0601144

  1. Gustafsson M, Hoernquist M, Lombardi A

Comparison and validation of community structures in complex networks

e-print: physics/0601057

Title:Vertex cover problem studied by cavity method: Analytics and population dynamics

Author(s):Zhou HJ

Source:EUROPEAN PHYSICAL JOURNAL B 32 (2): 265-270 MAR 2003

Cited in:

1.Weigt,M, Zhou, HJ

Message passing for vertex covers

PHYSICAL REVIEW E 74 (4): Art. NO 046110 OCT 2006

2.Fay CW, Liu JW, Duxbury PM
Maximum independent set on diluted triangular lattices
PHYSICAL REVIEW E 73 (5): Art. No. 056112 Part 2 MAY 2006

3.Zhou HJ
Long-range frustration in a spin-glass model of the vertex-cover problem
PHYSICAL REVIEW LETTERS 94 (21): Art. No. 217203 JUN 3 2005

4.S. H. Li and J. Zhang (2005).
Computer Science 32: 132-137.
Survey propagation: An effective algorithm for solving SAT

5.Barthel W, HartmannAK
Clustering analysis of the ground-state structure of the vertex-cover problem
PHYSICAL REVIEW E 70 (6): Art. No. 066120 Part 2 DEC 2004

6.Rivoire O
Properties of atypical graphs from negative complexities
JOURNAL OF STATISTICAL PHYSICS 117 (3-4): 453-476 NOV 2004

7.A. K. Hartman and M. Weigt (2003).
Journal of Physics A-Math. Gen. 36: 11069-11093.
Statistical mechanics of the vertex-cover problem

Title: Scaling exponents and clustering coefficients of a growing random network

Author(s): Zhou HJ

Source:PHYSICAL REVIEW E 66 (1): Art. No. 016125 Part 2, JUL 2002

Cited in:

  1. Zhu, CP, Kuh, A, Wang, J, De Wilde, P

Analysis of an evolving email network

PHYSICAL REVIEW E 74 (4): Art. NO 046109 OCT 2006

  1. de Silva E, Stumpf MPH

Complex networks and simple models in biology

JOURNAL OF THE ROYAL SOCIETY INTERFACE 2 (5): 419-430 DEC 22 2005

  1. Morrison JL, Breitling R, Higham DJ, et al.

GeneRank: Using search engine technology for the analysis of microarray experiments

BMC BIOINFORMATICS 6: Art. No. 233 SEP 21 2005

Title:Conformation and rigidity of DNA microcircles containing waf1 response element for p53 regulatory protein

Author(s):Zhou HJ, Zhang Y, Ou-Yang ZC, Lindsay SM, Feng XZ, Balagurumoorthy P, Harrington RE

Source:JOURNAL OF MOLECULAR BIOLOGY 306 (2): 227-238 FEB 16 2001

Cited in:

  1. Pastre D, Pietrement O, Zozime A, et al.
    Study of the DNA/ethidium bromide interactions on mica surface by atomic force microscope: Influence of the surface friction
    BIOPOLYMERS 77 (1): 53-62 JAN 2005
  2. Weinberg RL, Veprintsev DB, FershtAR
    Cooperative binding of tetrameric p53 to DNA
    JOURNAL OF MOLECULAR BIOLOGY 341 (5): 1145-1159 AUG 27 2004
  3. Palecek E, Brazda V, Jagelska E, et al.
    Enhancement of p53 sequence-specific binding by DNA supercoiling
    ONCOGENE 23 (12): 2119-2127 MAR 18 2004
  4. Tullo A, Mastropasqua G, Bourdon JC, et al.
    Adenosine deaminase, a key enzyme in DNA precursors control, is a new p73 target
    ONCOGENE 22 (54): 8738-8748 NOV 27 2003
  5. Han SB, Ralin D, Wang J, et al.
    Attachment of monoclonal antibody molecules to surface-confined DNA duplexes imaged by atomic force microscopy
    LANGMUIR 19 (21): 8943-8950 OCT 14 2003
  6. Balagurumoorthy P, Lindsay SM, Harrington RE
    Atomic force microscopy reveals kinks in the p53 response element DNA
    BIOPHYSICAL CHEMISTRY 101: 611-623 DEC 10 2002

Title:Stretching single-stranded DNA: Interplay of electrostatic, base-pairing, and base-pair stacking interactions

Author(s):Zhang Y, Zhou HJ, Ou-Yang ZC

Source:BIOPHYSICAL JOURNAL 81 (2): 1133-1143 AUG 2001

Cited in:

  1. Tkachenko, Alexei V.

Electrostatic effects in DNA stretching

PHYSICAL REVIEW E 74 (4): Art. No 041801, October 2006

  1. Lee, Chewook, Cho, Minhaeng

Vibrational dynamics of DNA. II. Deuterium exchange effects andsimulated IR absorption spectra

JOURNAL OF CHEMICAL PHYSICS 125 (11): Art. NO 114509 SEP 21, 2006

  1. Aadi, AE, O’Sullivan, CK,

Aptamer conformational switch as sensitive electrochemical biosensorfor potassium ion recognition

CHEMICAL COMMUNICATIONS 2006 (32): 3432-3434

  1. Grajcar L, El Amri C, Ghomi M, et al.
    Assessment of adenyl residue reactivity within model nucleic acids by surface enhanced Raman spectroscopy
    BIOPOLYMERS 82 (1): 6-28 MAY 2006
  2. Liang XG, Kuhn H, Frank-Kamenetskii MD
    Monitoring single-stranded DNA secondary structure formation by determining the topological state of DNA catenanes
    BIOPHYSICAL JOURNAL 90 (8): 2877-2889 APR 2006
  3. Cysewski P, Czyznikowska-Balcerak Z
    The MP2 quantum chemistry study on the local minima of guanine stacked with all four nucleic acid bases in conformations corresponding to mean B-DNA
    JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM 757 (1-3): 29-36 DEC 30 2005
  4. An HJ, Guo YC, Zhang XD, et al.
    Nanodissection of single- and double-stranded DNA by atomic force microscopy
    JOURNAL OF NANOSCIENCE AND NANOTECHNOLOGY 5 (10): 1656-1659 OCT 2005
  5. He F, Tang YL, Wang S, et al.
    Fluorescent amplifying recognition for DNA G-quadruplex folding with a cationic conjugated polymer: A platform for homogeneous potassium detection
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 127 (35): 12343-12346 SEP 7 2005
  6. Shroff H, Reinhard BM, Siu M, et al.
    Biocompatible force sensor with optical readout and dimensions of 6 nm(3)
    NANO LETTERS 5 (7): 1509-1514 JUL 2005
  7. Ansari A, Kuznetsov SV
    Is hairpin formation in single-stranded polynucleotide diffusion-controlled?
    JOURNAL OF PHYSICAL CHEMISTRY B 109 (26): 12982-12989 JUL 7 2005
  8. Lei XL, Wang XF, Hu J, et al.
    Dynamic simulation of single DNA molecule at the base level
    CHINESE PHYSICS LETTERS 22 (6): 1540-1543 JUN 2005
  9. Charvin G, Vologodskii A, Bensimon D, et al.
    Braiding DNA: Experiments, simulations, and models
    BIOPHYSICAL JOURNAL 88 (6): 4124-4136 JUN 2005
  10. Zhang Y, Skolnick J
    The protein structure prediction problem could be solved using the current PDB library
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (4): 1029-1034 JAN 25 2005
  11. Zhou HJ, Zhang Y
    Hierarchical chain model of spider capture silk elasticity
    PHYSICAL REVIEW LETTERS 94 (2): Art. No. 028104 JAN 21 2005
  12. Liu F, Ou-Yang ZC
    Monte Carlo simulation for single RNA unfolding by force
    BIOPHYSICAL JOURNAL 88 (1): 76-84 JAN 2005
  13. Liu F, Ou-Yang ZC
    Unfolding single RNA molecules by mechanical force: A stochastic kinetic method
    PHYSICAL REVIEW E 70 (4): Art. No. 040901 Part 1 OCT 2004
  14. Sheng YJ, Lin HJ, Chen JZY, et al.
    Static properties of a stacking chain
    MACROMOLECULES 37 (25): 9631-9638 DEC 14 2004
  15. Sattin BD, Pelling AE, Goh MC
    DNA base pair resolution by single molecule force spectroscopy
    NUCLEIC ACIDS RESEARCH 32 (16): 4876-4883 2004
  16. Seol Y, Skinner GM, Visscher K
    Elastic properties of a single-stranded charged homopolymeric ribonucleotide
    PHYSICAL REVIEW LETTERS 93 (11): Art. No. 118102 SEP 10 2004
  17. Buhot A, Halperin A
    Effects of stacking on the configurations and elasticity of single-stranded nucleic acids
    PHYSICAL REVIEW E 70 (2): Art. No. 020902 Part 1 AUG 2004
  18. Cocco S, Yan J, Leger JF, et al.
    Overstretching and force-driven strand separation of double-helix DNA
    PHYSICAL REVIEW E 70 (1): Art. No. 011910 Part 1 JUL 2004
  19. Murphy MC, Rasnik I, Cheng W, et al.
    Probing single-stranded DNA conformational flexibility using fluorescence spectroscopy
    BIOPHYSICAL JOURNAL 86 (4): 2530-2537 APR 2004
  20. Liu F, Dai LR, Ou-Yang ZC
    Theory for the force-stretched double-stranded chain molecule
    JOURNAL OF CHEMICAL PHYSICS 119 (15): 8112-8123 OCT 15 2003
  21. Classen S, Lyons D, Cech TR, et al.
    Sequence-specific and 3 '-end selective single-strand DNA binding by the Oxytricha nova telomere end binding protein alpha subunit
    BIOCHEMISTRY 42 (31): 9269-9277 AUG 12 2003
  22. Zhang Y, Kolinski A, Skolnick J
    TOUCHSTONE II: A new approach to ab initio protein structure prediction
    BIOPHYSICAL JOURNAL 85 (2): 1145-1164 AUG 2003
  23. Allemand JF, Bensimon D, Croquette V
    Stretching DNA and RNA to probe their interactions with proteins
    CURRENT OPINION IN STRUCTURAL BIOLOGY 13 (3): 266-274 JUN 2003
  24. Cocco S, Marko JF, Monasson R
    Slow nucleic acid unzipping kinetics from sequence-defined barriers
    EUROPEAN PHYSICAL JOURNAL E 10 (2): 153-161 FEB 2003
  25. Cocco S, Marko JF, Monasson R, et al.
    Force-extension behavior of folding polymers
    EUROPEAN PHYSICAL JOURNAL E 10 (3): 249-263 MAR 2003
  26. Bedrov D, Smith GD
    The role of local conformations in the stretching of a poly(ethylene oxide) chain in solution
    JOURNAL OF CHEMICAL PHYSICS 118 (14): 6656-6663 APR 8 2003
  27. Ou-Yang ZC
    The elastic theory of single-molecule DNA
    INTERNATIONAL JOURNAL OF MODERN PHYSICS B 17 (1-2): 69-75 JAN 20 2003
  28. Ou-Yang ZC, Zhou H, Zhang Y
    The elastic theory of a single DNA molecule
    MODERN PHYSICS LETTERS B 17 (1): 1-10 JAN 10 2003
  29. 欧阳钟灿

DNA单分子弹性理论

物理 32 (11): 728-731 (2003)

  1. DessingesMN, Maier B, Zhang Y, et al.
    Stretching single stranded DNA, a model polyelectrolyte
    PHYSICAL REVIEW LETTERS 89 (24): Art. No. 248102 DEC 9 2002
  2. Cocco S, Marko JF, Monasson R
    Theoretical models for single-molecule DNA and RNA experiments: From elasticity to unzipping
    COMPTES RENDUS PHYSIQUE 3 (5): 569-584 JUN 2002
  3. Williams MC, Rouzina I
    Force spectroscopy of single DNA and RNA molecules
    CURRENT OPINION IN STRUCTURAL BIOLOGY 12 (3): 330-336 JUN 2002
  4. Zhang Y, Skolnick J

Parallel-hat tempering: A Monte Carlo search scheme for the identification of low-energy structures
JOURNAL OF CHEMICAL PHYSICS 115 (11): 5027-5032 SEP 15 2001

Title:Pulling hairpinned polynucleotide chains: Does base-pair stacking interaction matter?

Author(s):Zhou HJ, Zhang Y

Source:JOURNAL OF CHEMICAL PHYSICS 114 (19): 8694-8700 MAY 15 2001

Cited in:

1.Zhao Y, Truhlar DG
How well can new-generation density functional methods describe stacking interactions in biological systems?
PHYSICAL CHEMISTRY CHEMICAL PHYSICS 7 (14): 2701-2705 2005

2.Tkachenko AV
Unfolding and unzipping of single-stranded DNA by stretching
PHYSICAL REVIEW E 70 (5): Art. No. 051901 Part 1 NOV 2004

3.Sheng YJ, Lin HJ, Chen JZY, et al.
Static properties of a stacking chain
MACROMOLECULES 37 (25): 9631-9638 DEC 14 2004

4.Dai LR, Liu F, Ou-Yang ZC
End-to-end distance distribution of force stretched chains reconstruction by maximum-entropy method
INTERNATIONAL JOURNAL OF MODERN PHYSICS B 18 (17-19): 2365-2375 JUL 30 2004

5.Liu F, Dai LR, Ou-Yang ZC
Theory for the force-stretched double-stranded chain molecule
JOURNAL OF CHEMICAL PHYSICS 119 (15): 8112-8123 OCT 15 2003

6.Dai LR, Liu F, Ou-Yang ZC
Maximum-entropy calculation of the end-to-end distance distribution of force-stretched chains
JOURNAL OF CHEMICAL PHYSICS 119 (15): 8124-8132 OCT 15 2003

7.Zhou HJ, Zhang Y, Ou-Yang ZC
The elastic theory of a single DNA molecule
PRAMANA-JOURNAL OF PHYSICS 61 (2): 353-360 AUG 2003

8.Muller M
Statistical physics of RNA folding
PHYSICAL REVIEW E 67 (2): Art. No. 021914 Part 1 FEB 2003

9.Ou-Yang ZC
The elastic theory of single-molecule DNA
INTERNATIONAL JOURNAL OF MODERN PHYSICS B 17 (1-2): 69-75 JAN 20 2003

10.Ou-Yang ZC, Zhou H, Zhang Y
The elastic theory of a single DNA molecule
MODERN PHYSICS LETTERS B 17 (1): 1-10 JAN 10 2003

11.Dua A, Cherayil BJ
The thermodynamics of reversible cyclization in semiflexible polymers
JOURNAL OF CHEMICAL PHYSICS 117 (16): 7765-7773 OCT 22 2002

12.Zhou H, Zhang Y, Ou-Yang ZC
Elastic theories of single DNA molecules
PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS 306 (1-4): 359-367 APR 1 2002

13.Lavery R, Lebrun A, Allemand JF, et al.
Structure and mechanics of single biomolecules: experiment and simulation
JOURNAL OF PHYSICS-CONDENSED MATTER 14 (14): R383-R414 APR 15 2002

14.Lubensky DK, Nelson DR
Single molecule statistics and the polynucleotide unzipping transition
PHYSICAL REVIEW E 65 (3): Art. No. 031917 Part 1 MAR 2002

15.Zhang Y, Zhou HJ, Ou-Yang ZC
Stretching single-stranded DNA: Interplay of electrostatic, base-pairing, and base-pair stacking interactions
BIOPHYSICAL JOURNAL 81 (2): 1133-1143 AUG 2001

Title:Stretch-induced hairpin-coil transitions in designed polynucleotide chains

Author(s):Zhou HJ, Zhang Y, Ou-Yang ZC

Source:PHYSICAL REVIEW LETTERS 86 (2): 356-359 JAN 8 2001

Cited in:

  1. Liu F, Tong H, Ou-Yang ZC
    Force unfolding single RNAs
    BIOPHYSICAL JOURNAL 90 (6): 1895-1902 MAR 2006
  2. Pillsbury M, Orland H, Zee A
    Steepest descent calculation of RNA pseudoknots
    PHYSICAL REVIEW E 72 (1): Art. No. 011911 Part 1 JUL 2005
  3. Ou-Yang ZC
    The elastic theory of single-molecule DNA
    INTERNATIONAL JOURNAL OF MODERN PHYSICS B 17 (1-2): 69-75 JAN 20 2003
  4. Ou-Yang ZC, Zhou H, Zhang Y
    The elastic theory of a single DNA molecule
    MODERN PHYSICS LETTERS B 17 (1): 1-10 JAN 10 2003
  5. MakarovDE, Rodin GJ
    Configurational entropy and mechanical properties of cross-linked polymer chains: Implications for protein and RNA folding
    PHYSICAL REVIEW E 66 (1): Art. No. 011908 Part 1 JUL 2002
  6. Lubensky DK, Nelson DR
    Single molecule statistics and the polynucleotide unzipping transition
    PHYSICAL REVIEW E 65 (3): Art. No. 031917 Part 1 MAR 2002
  7. Zhang Y, Zhou HJ, Ou-Yang ZC
    Stretching single-stranded DNA: Interplay of electrostatic, base-pairing, and base-pair stacking interactions
    BIOPHYSICAL JOURNAL 81 (2): 1133-1143 AUG 2001
  8. Zhou HJ, Zhang Y
    Pulling hairpinned polynucleotide chains: Does base-pair stacking interaction matter?
    JOURNAL OF CHEMICAL PHYSICS 114 (19): 8694-8700 MAY 15 2001

Title:Elastic property of single double-stranded DNA molecules: Theoretical study and comparison with experiments

Author(s):Zhou HJ, Zhang Y, Ou-Yang ZC

Source:PHYSICAL REVIEW E 62 (1): 1045-1058 Part B, JUL 2000

Cited in:

  1. Kastenholz,MA, Hunenberger, PH

The transition between the B and Z conformations of DNA investigated by targeted molecular dynamics simulations with explicit solvation

BIOPHYSICAL JOURNAL 91 (8): 2976-2990 OCT 2006

  1. Lim,CT, Zhou,EH, Vedula,SRK, Fu,HX

Experimental techniques for single cell and single molecule biomechanics

MATERIALS SCIENCE & ENGINEERING C-BIOMIMETIC AND SUPRAMOLECULAR SYSTEMS 26 (8): 1278-1288 SEP 2006