Theoretical and Applied Genetics
Genome-wide association mapping of agronomic and morphologic traits in highly structured populations of barley cultivars
Minghui Wang1, Ning Jiang1, 2, Tianye Jia1, Lindsey Leach3, James Cockram4, Robbie Waugh2, Luke Ramsay2, Bill Thomas2, Zewei Luo1, †
1 School of Biosciences, The University of Birmingham, Edgbaston, Birmingham B15 2TT, UK
2 Department of Plant Sciences, University of Oxford, South Parks Road, Oxford, OX1 3RB, UK
3 BioSS Unit, Scottish Crop Research Institute, Invergowrie, Dundee, DD2 5DA, UK
4 John Bingham Laboratory, National Institute of Agricultural Botany, Cambridge CB3 0LE, UK
Author for correspondence:
Professor Zewei Luo
E-mail:
Table S1 Barley samples recruited in the present association mapping.
1 / 1589 / AGENDA
2 / 1580 / NERUDA
3 / 1297 / HOPPER
4 / - / HOR2596
5 / - / SALOME
6 / - / CORVETTE
7 / 1225 / TAMARIS
8 / 1823 / EDEN
9 / 1335 / VERTIGE
10 / 1126 / EPIC
11 / 1874 / INDOLA
12 / - / QUINN
13 / 1435 / OPAL
14 / 1624 / MILENA
15 / - / EGMONT
16 / - / CAMEO
17 / 1769 / COCKTAIL
18 / - / OBOE
19 / - / KEG
20 / 1974 / TIMORI
21 / 398 / Halcyon
22 / 1466 / HALIFAX
23 / - / NOMAD
24 / 1709 / EDEN
25 / 1201 / JIVE
26 / 1456 / LAUREL
27 / 1276 / ANTIGUA
28 / 1202 / GLEN
29 / 2188 / CSBC 5466-27
30 / 1211 / ARCTIC
31 / - / USSR KRIM
32 / 1847 / BERILLYUM
33 / 2058 / CASSATA
34 / - / HOR1504
35 / 1445 / ARROW
36 / 750 / TYNE
37 / 1385 / BECKET
38 / 1206 / TUDOR
39 / 1888 / NORD 96601/6
40 / 1354 / CHALICE
41 / 2102 / ACROBAT
42 / 1990 / CELSIUS
43 / - / HORDEUM 1063
44 / - / BEECHER
45 / 947 / Fighter
46 / 2209 / NFC 404-80
47 / 1924 / SPECTRUM
48 / 1726 / OUTLOOK
49 / 1467 / CPBT B20 (R2)
50 / 1599 / PIPPA
51 / 1867 / DRUM
52 / 1327 / TOFFEE
53 / 1363 / ARDILA
54 / 610 / Camargue
55 / - / LA ESTANZUELA
56 / - / GONDAR
57 / - / ALGERIAN
58 / 1410 / CENTURY
59 / 2031 / HYDRA
60 / - / RICARDO
61 / 1091 / FELICIE
62 / 1768 / NOVELLO
63 / 1196 / REGGAE
64 / - / FRANKENIII
65 / - / FORRAJERA X RIKA
66 / - / L100
67 / - / TRUMPF
68 / 1471 / LEONIE
69 / 1261 / JET
70 / 1334 / SPIRIT
71 / 1651 / SACHA
72 / 1939 / WESTMINSTER
73 / - / MARION
74 / 1556 / DEW
75 / 1209 / PUNCH
76 / 1900 / 961374 (R2)
77 / 1826 / GODIVA
78 / 1423 / HORIZON
79 / - / SIMON
80 / 1146 / COOPER
81 / 1480 / Chime
82 / 1530 / HARLAND
83 / 1236 / LAIRD
84 / - / REGENT
85 / 1744 / NIMBUS
86 / 1441 / HURRICANE
87 / - / STANZA
88 / 1681 / WIKINGETT
89 / 827 / GAULOIS
90 / - / GRIT
91 / 1679 / WIDRE
92 / - / CI 9214
93 / 1311 / TORUP
94 / - / HASSAN
95 / 1981 / HOUSTON
96 / 1055 / WILLOW
97 / 1949 / LP1124.8.98
98 / 1442 / WIZARD
99 / 1239 / PITCHER
100 / 2119 / PUBLICAN
101 / 1584 / NSL 97-4579
102 / - / CLANSMAN
103 / - / HOR2556
104 / 2092 / TARTAN
105 / 1715 / PEDIGREE
106 / 1179 / ELECTRON
107 / 1643 / SPINNER
108 / 2212 / NFC 404-62
109 / 2180 / SB02146
110 / 1185 / AMBER
111 / - / SUDAN
112 / 1451 / VILNA
113 / 2066 / MARADO
114 / 910 / MAUD
115 / 2091 / MH 94 CF 13.1.2
116 / 1741 / RAKAIA
117 / 1117 / GAELIC
118 / 1792 / NOCTURNE
119 / 1824 / MORTIMER
120 / - / PORTER
121 / 1610 / TIPSTER
122 / 1426 / SABEL
123 / - / Krona
124 / 1468 / ARTIST
125 / 1350 / RICARDA
126 / 2021 / SURTEES
127 / 1628 / SCYLLA
128 / 1708 / SOMBRERO
129 / 2050 / TUCSON
130 / - / HOOD
131 / 2044 / 995964
132 / 1318 / Pearl
133 / 1540 / VIOLET
134 / 1436 / MARINER
135 / 1899 / NECTARIA
136 / - / PRIOR
137 / 1863 / ATHENA
138 / 1507 / CYNTHIA
139 / - / GALINA
140 / 951 / MANITOU
141 / 1450 / DAMAS
142 / 2076 / BLYTHE
143 / 1721 / ANTELOPE
144 / 1862 / Carafe
145 / - / SKIFF
146 / 1951 / SW MACSENA
147 / 1250 / MELITTA
148 / 1224 / VANILLA
149 / 2203 / NSL 04-4683
150 / - / PICCOLO
151 / 1453 / MILANO
152 / 1170 / TEMPO
153 / 1748 / KIRSTY
154 / 2171 / ASB 04-18
155 / 560 / MAGIE
156 / - / GRAPHIC
157 / 1101 / GOLDIE
158 / 1605 / SAPPHIRE
159 / - / CI 2750
160 / 1595 / AVEC
161 / 1625 / AQUARELLE
162 / 1474 / BERWICK
163 / 1238 / TANKARD
164 / 1828 / AQUARELLE
165 / 2123 / PENTHOUSE
166 / 1808 / LAMBADA
167 / 2024 / SW 2808
168 / 1324 / HONEY
169 / 2078 / CEBECO 02215-05
170 / 1687 / ANAIS
171 / 1529 / SAFFRON
172 / - / TYRA
173 / 1731 / CELLINA
174 / 1184 / HANNA
175 / 1882 / CPBT B66
176 / 2112 / CPBT B76
177 / 2048 / ALUMINIUM
178 / 1416 / THISTLE
179 / - / ESTEREL
180 / - / ASTRIX
181 / 1353 / DRAY
182 / 1246 / CLARITY
183 / 1245 / PRIMERA
184 / 1031 / Chariot
185 / 1892 / FARADAY
186 / 1500 / COLADA
187 / 2077 / PELICAN
188 / 1182 / GAZELLE
189 / - / W 19618/10072
190 / 1608 / TUCKER
191 / 1325 / LARK
192 / 2054 / CENTURION
193 / - / PLUMAGE ARCHER
194 / 1364 / MADRAS
195 / 1736 / BOREALE
196 / 1147 / BREWSTER
197 / 1991 / FAHRENHEIT
198 / 1317 / RAVEL
199 / 1161 / DUET
200 / 1865 / Doyen
201 / 1947 / CPBT B67
202 / 1746 / CATALINA
203 / 1469 / MASAI
204 / 1933 / POWER
205 / - / GOLDMARKER
206 / 2042 / KASSIMA
207 / 888 / TARGET
208 / 1700 / CANNOCK
209 / 1680 / WEITOR
210 / 1583 / NSL 97-4552
211 / - / VIOLA
212 / - / DEA
213 / 2036 / POKER
214 / 1287 / PORTRAIT
215 / - / H8755
216 / - / LA ESTANZUELA X RICA
217 / 1783 / LOUISE
218 / 1133 / DELIBES
219 / 1397 / ANGELA
220 / 1361 / Scarlett
221 / - / GOLD
222 / 1293 / LANDLORD
223 / 1688 / TABORA
224 / - / ABYSSINIAN
225 / - / LOTTA
226 / 1837 / MACARENA
227 / 2096 / SCANDIUM
228 / 1794 / WIGWAM
229 / 2104 / CALICO
230 / - / CI 9819
231 / 1345 / CANDY
232 / 1498 / TAVERN
233 / - / TAMPAR
234 / 1547 / SUMO
235 / 1541 / MONTAGE
236 / 1230 / CROWN
237 / 1786 / SW HILLARY
238 / 1907 / CALLIOPE
239 / 1330 / TURINE
240 / 1946 / LITHIUM
241 / 1187 / CORK
242 / 1940 / Oxbridge
243 / - / PIRATE
244 / 1058 / SWIFT
245 / 1793 / WOMBAT
246 / 1181 / TOSCA
247 / 1388 / MAHOGANY
248 / 1492 / POTTER
249 / 1022 / DALLAS
250 / 1313 / TROSA
251 / - / GEORGIE
252 / 2147 / 5353 DH1
253 / 2040 / SILICON
254 / 1532 / CHAMOMILE
255 / 2134 / CPBT B78
256 / 2122 / TAPHOUSE
257 / 2160 / AC 99/077/2
258 / 2075 / SW 165
259 / - / HOR2937
260 / 1499 / CHASER
261 / - / PATTY
262 / - / W 22049/3399
263 / 1495 / FOXTROT
264 / - / K 20019
265 / 1219 / MYSTIQUE
266 / 820 / POSAUNE
267 / - / VALTICKY
268 / 1448 / Vanessa
269 / 1642 / TROPIC
270 / 1260 / FALCON
271 / 1531 / CAMPION
272 / 1432 / CECILIA
273 / - / GERKRA
274 / 1886 / AMARENA
275 / 1722 / CALCUTTA
276 / 1496 / ANNABELL
277 / 1511 / ANVIL
278 / 725 / FROLIC
279 / 1724 / CATHAY
280 / 1755 / TROON
281 / 2002 / SW NORMA
282 / 1394 / MUSETTE
283 / 806 / Puffin
284 / 1160 / MELANIE
285 / 1443 / STEEPLE
286 / 1621 / VESUVIUS
287 / 1567 / PROTEGE
288 / 1418 / MANDOLIN
289 / - / HARBIN
290 / 1733 / SW FARRIER
291 / 1682 / HEATHER
292 / 1902 / 12337 ZH (R2)
293 / 1059 / FIREFLY
294 / 1950 / SW SCANIA
295 / 1875 / FELTWELL
296 / 2110 / SHAKIRA
297 / 1290 / CRUSADER
298 / 1727 / LOMERIT
299 / 1884 / ELMSTEAD
300 / 1773 / SW STELLA
301 / 1937 / MINSTREL
302 / 1619 / MOONSHINE
303 / 1581 / NSL 95-1257
304 / 2073 / ACCRUE
305 / 1597 / ALABAMA
306 / 1923 / CONCEPT
307 / 1321 / PERIDOT
308 / 1717 / SEQUEL
309 / 1676 / HARRIOT
310 / 1984 / CINNAMON
311 / 2206 / NFC 404-64
312 / 1777 / CLASS
313 / 1982 / CELEBRITY
314 / - / GIMPEL
315 / 1220 / ICI 85161/4427
316 / 1419 / ACAPELLA
317 / 1420 / SPLASH
318 / 1544 / CWB 97-6 (R2)
319 / 1214 / MUSCAT
320 / 1204 / REGINA
321 / 1215 / PACIFIC
322 / 597 / DIGGER
323 / 974 / CHAD
324 / 1307 / Henni
325 / 1527 / GOLDMINE
326 / - / CI 9825
327 / 802 / Prisma
328 / 1906 / SWUB 01-41 (R2)
329 / - / UNIVERSE
330 / 1262 / VOLLEY
331 / 1894 / CORIOLIS
332 / 1885 / MERODE
333 / - / ERNA
334 / 2138 / NSL 03-7309
335 / 1702 / SAIGON
336 / 1172 / MADRIGAL
337 / 1673 / CELEBRA
338 / 2025 / CORSICA
339 / 1668 / SPIRE
340 / 1344 / AYANA
341 / 2035 / SKITTLE
342 / 2111 / ANACONDA
343 / 2071 / 5593 BH2
344 / - / ESTATE
345 / 1790 / CONNOISSEUR
346 / 1825 / CAMION
347 / 1963 / Waggon
348 / 1210 / TOKYO
349 / 1880 / CPBT B64
350 / 1316 / CRESCENDO
351 / 1244 / RAGTIME
352 / - / OSIRIS*
353 / 1705 / KESTREL
354 / - / FORCE
355 / 1910 / FLAGON
356 / 1996 / MOSAIC
357 / 1267 / CREDO
358 / 1221 / PRELUDE
359 / 1188 / Optic
360 / 1389 / BREEZE
361 / 1626 / PICT
362 / - / BORWINA
363 / 2034 / RUMMY
364 / - / EGYPT 4
365 / 836 / HART
366 / 1761 / GLOBAL
367 / 1357 / EXTRACT
368 / - / TIFANG
369 / 688 / Blenheim
370 / 2052 / TURNBERRY
371 / - / PERUVIAN
372 / - / SHIRE
373 / 1382 / PACIFIC
374 / 2103 / TOKEN
375 / 2007 / AC 97/H2406/10
376 / - / GOLF
377 / 1438 / ANTONIA
378 / 1281 / EMILIA
379 / 1191 / BRAHMS
380 / 1488 / STARLIGHT
381 / 1919 / THALIA
382 / 1213 / JEREZ
383 / 2039 / CRIBBAGE
384 / 2130 / PRAGUE
385 / 1604 / DIAMOND
386 / 1764 / VORTEX
387 / 1788 / SW ALISON
388 / 884 / GYPSY
389 / 1921 / MHHX011
390 / 1346 / ASKANOVA
391 / 1579 / VISKOSA
392 / 1427 / STATIC
393 / 1914 / RATTLE
394 / 2003 / COLIBRI
395 / 1501 / SALOON
396 / 1384 / OLERON
397 / 2055 / PARAMOUNT
398 / 1835 / GRANTA
399 / - / CI 2330
400 / 1841 / MANDOLIN
401 / 1528 / HAKA
402 / 1770 / SEBASTIAN
403 / 1552 / BARCELONA
404 / 1165 / Angora
405 / 1411 / DECANTER
406 / 1836 / VELVET
407 / 1555 / AKITA
408 / 1421 / Z 91-103-21
409 / 1697 / SUNBEAM
410 / 1127 / LINNET
411 / 1804 / NORD 96629/46 (R2)
412 / 1291 / QUARTET
413 / 2047 / BEATRIX
414 / - / RIA
415 / 1566 / PRESTIGE
416 / 1985 / DOLPHIN
417 / 721 / Corniche
418 / - / LYALLAPUR
419 / - / HANKA
420 / - / JULIA
421 / 1766 / COLSTON
422 / 1390 / MAGNOLIA
423 / - / PEEL
424 / 1606 / CARAT
425 / 2017 / SILVERSTONE
426 / - / BULBECK
427 / 1957 / TOUCAN
428 / 1228 / GLEAM
429 / 1071 / INTRO
430 / 1510 / Z 9175 (R2)
431 / 1654 / BRAEMAR
432 / - / W 22048/33963
433 / 1194 / CANASTA
434 / 2106 / GUNDEL
435 / 1386 / FLUTE
436 / 1294 / DRAUGHT
437 / 1506 / WHISPER
438 / 1820 / TALLICA
439 / 1431 / PONGO
440 / 2098 / MONIKA
441 / - / ESK
442 / - / HERITAGE
443 / 1701 / NSL 97-6002 (R2)
444 / - / NATASHA
445 / 1339 / WINNER
446 / 2090 / MH BI 8
447 / 1762 / CAMPALA
448 / - / KYM
449 / 1162 / SUNRISE
450 / 1859 / SKAGEN
451 / 1961 / URSA
452 / 2105 / VIVENDI
453 / 1574 / CELLAR
454 / 2067 / SELECTION
455 / 1403 / MASQUERADE
456 / 1259 / KITE
457 / 1107 / HERON
458 / - / CI 12202
459 / 2004 / MONALISA
460 / 954 / SPRITE
461 / 2121 / QUENCH
462 / 1565 / ASTORIA
463 / 1349 / LIVET
464 / 456 / KLAXON
465 / - / REGATTA
466 / 1404 / TABETHA
467 / - / MARIS MINK
468 / - / KRONA
469 / - / FRANKEN II
470 / 1758 / RANGOON
471 / 1728 / MEAD
472 / 1242 / WREN
473 / 1285 / SPICE
474 / 2088 / CEDAR
475 / 674 / DANDY
476 / 1264 / COBALT
477 / - / CEBADA FORRAJERA
478 / 1666 / ADONIS
479 / 1424 / SPIRAL
480 / 1011 / Derkado
481 / 1415 / LINDEN
482 / 1983 / CYPRESS
483 / - / BOLIVIA
484 / - / PFLUGS INTENSIV
485 / 1444 / ZULU
486 / 1122 / FINCH
487 / 1405 / MOLLY
488 / 662 / Torrent
489 / 1594 / FONTANA
490 / 994 / BRONZE
491 / 1052 / CHESTNUT
492 / 1375 / FRACTAL
493 / 1534 / SARAH
494 / - / MAGNIF
495 / - / TENNIS
496 / 1176 / DIGBY
497 / 1208 / DRUID
498 / 1669 / SPIKE
499 / 1263 / RIFLE
500 / 1576 / BRISE
501 / 1903 / REGALIA
502 / - / W 22050/34061
503 / 2030 / APPALOOSA
504 / 1232 / ONYX
505 / - / SHERPA
506 / 1908 / IMOGEN
507 / 1663 / NSL 98-5065
508 / - / FORESTER
509 / 1575 / PEWTER
510 / 1398 / ETHNO
511 / - / AGIO
512 / 1920 / HERMIA
513 / 1854 / NSL 99-5363
514 / - / UNION
515 / 1303 / CHARM
516 / 1282 / MADISON
517 / 1320 / JEWEL
518 / 1989 / ARCHIMEDES
519 / 1554 / THRIFT
520 / - / SULTAN
521 / 1402 / HELIGAN
522 / - / DELTA
523 / 1980 / CHARLESTON
524 / - / FLEET
525 / 1955 / MACAW
526 / 1376 / SPEY
527 / 2213 / CPBT B80
528 / 1157 / JUNO
529 / 1183 / EMERAUDE
530 / - / FERGIE
531 / 1283 / PILOT
532 / - / AMAZONE
533 / - / CI 11458
534 / 1392 / BISTRO
535 / - / MIDAS
536 / 2135 / CPBT B79
537 / 1536 / WEAVER
538 / 1301 / RAINBOW
539 / 1203 / RIVIERA
540 / - / LIBELLE
541 / - / GOLDFOIL
542 / 830 / MELUSINE
543 / 1171 / Fanfare
544 / - / PRIMA
545 / - / PERUVIAN
546 / 1623 / GODIVA
547 / - / LOFA ABED
548 / 2161 / AC 997/077/13
549 / 1864 / TOBY
550 / 1787 / SW SIENNA
551 / 904 / ALEXIS
552 / 1237 / CHIEFTAIN
553 / 1617 / CHICANE
554 / - / MANCHURIAN
555 / 1535 / CAROLA
556 / 1968 / WICKET
557 / 1627 / PERTH
558 / - / TELLUS
559 / 1253 / TARDUS
560 / 1248 / MIKADO
561 / 2173 / ASB 04-20
562 / 1693 / JESSICA
563 / 1212 / MEDOC
564 / 1730 / PARASOL
565 / 1706 / SWALLOW
566 / 946 / EAGLE
567 / 1490 / CINDY
568 / 2145 / 410/3E
569 / 657 / Marinka
570 / 816 / Pastoral
571 / 1842 / AMOURETTE
572 / 1698 / CLARA
573 / 1256 / TRINIDAD
574 / 1514 / SONIC
575 / 1630 / CAPTION
576 / 2053 / PUTNEY
577 / 578 / Pipkin
578 / - / BERAC
579 / - / LA MESITA*
580 / 1799 / KINGSTON
581 / 1271 / GLINT
582 / 1396 / SEVILLA
583 / - / ARABISCHE
584 / 899 / CLARINE
585 / 2201 / NSL 04-4622
586 / 1377 / CHINTZ
587 / 1463 / SIBERIA
588 / 1240 / TRINITY
589 / 1987 / MALWINTA
590 / 1745 / PELICAN
591 / 1659 / VEGAS
592 / 1457 / ROUNDER
593 / - / HEILS FRANKEN
594 / 1871 / REBECCA
595 / - / W 17801/2279
596 / 1775 / MAYPOLE
597 / 2187 / NORD 03/2408
598 / 1356 / FERMENT
599 / 1326 / BATON
600 / 1255 / POLYGENA
601 / 1298 / TODDY
602 / 733 / KIRA
603 / 1814 / MARITEM
604 / 1169 / RHYTHM
605 / 1563 / ALLIOT
606 / 1387 / CHORD
607 / 1381 / GOLDRUSH
608 / - / PIRKKA
609 / 1780 / BRAZIL
610 / 1001 / KARISMA
611 / 1295 / HOST
612 / 1312 / RENATA
613 / - / CAMBRINUS
614 / 395 / Plaisant
615 / 2065 / RETRIEVER
* AFP (Application for Protection) accession number is a unique plant variety identity registered by the Food and Environment Research Agency (FERA) as part of the UK plantbreeders' rights (PBR) and National Listing (NL) procedures. Those without AFP accession number are extra samples which are not previously reported in Cockram et al 2010.