The following is a list of our research program’s articles in print. The articles are sorted by PubMed Identifier (PMID). We have included the Web link to each citation in PubMed. If you click on the PMID number, you will be taken to the abstract and citation information in PubMed.
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PMID: 12953972
Siddiqui J, Remick DG.
Improved sensitivity of colorimetric compared to chemiluminescence ELISAs for cytokine assays.
J Immunoassay Immunochem. 2003;24(3):273-83.
PMID: 14961748
Shen Y, Jacobs JM, CampDG 2nd, Fang R, Moore RJ, Smith RD, Xiao W, Davis RW, Tompkins RG.
Ultra-high-efficiency strong cation exchange LC/RPLC/MS/MS for high dynamic range characterization of the human plasma proteome.
Anal Chem. 2004 Feb 15;76(4):1134-44.
PMID: 15481964
Irimia D, Tompkins RG, Toner M.
Single-cell chemical lysis in picoliter-scale closed volumes using a microfabricated device.
Anal Chem. 2004 Oct 15;76(20):6137-43.
PMID: 15516115
Sethu P, Anahtar M, Moldawer LL, Tompkins RG, Toner M.
Continuous flow microfluidic device for rapid erythrocyte lysis.
Anal Chem. 2004 Nov 1;76(21):6247-53.
PMID: 15548831
Feezor RJ, Baker HV, Mindrinos M, Hayden D, Tannahill CL, Brownstein BH, Fay A, MacMillan S, Laramie J, Xiao W, Moldawer LL, Cobb JP, Laudanski K, Miller-Graziano CL, Maier RV, Schoenfeld D, Davis RW, Tompkins RG; Inflammation and Host Response to Injury, Large-Scale Collaborative Research Program.
Whole blood and leukocyte RNA isolation for gene expression analyses.
Physiol Genomics. 2004 Nov 17;19(3):247-54.
PMID: 15595794
Murthy SK, Sin A, Tompkins RG, Toner M.
Effect of flow and surface conditions on human lymphocyte isolation using microfluidic chambers.
Langmuir. 2004 Dec 21;20(26):11649-55.
PMID: 15627965
Qian WJ, Jacobs JM, Camp DG 2nd, Monroe ME, Moore RJ, Gritsenko MA, Calvano SE, Lowry SF, Xiao W, Moldawer LL, Davis RW, Tompkins RG, Smith RD.
Comparative proteome analyses of human plasma following in vivo lipopolysaccharide administration using multidimensional separations coupled with tandem mass spectrometry.
Proteomics. 2005 Feb;5(2):572-84.
PMID: 15642986
Copeland S, Warren HS, Lowry SF, Calvano SE, Remick D; Inflammation and the Host Response to Injury Investigators.
Acute inflammatory response to endotoxin in mice and humans
Clin Diagn Lab Immunol. 2005 Jan;12(1):60-7
PMID: 15753121
Qian WJ, Monroe ME, Liu T, Jacobs JM, Anderson GA, Shen Y, Moore RJ,
Anderson DJ, Zhang R, Calvano SE, Lowry SF, Xiao W, Moldawer LL, Davis RW,
Tompkins RG, CampDG 2nd, Smith RD; Inflammation and the Host Response to Injury
Large Scale Collaborative Research Program.
Quantitative proteome analysis of human plasma following in vivo lipopolysaccharide administration using 16O/18O labeling and the accurate mass and time tag approach.
Mol Cell Proteomics. 2005 May;4(5):700-9. Epub 2005 Mar 7.
PMID: 15781863
Cobb JP, Mindrinos MN, Miller-Graziano C, Calvano SE, Baker HV, Xiao W, Laudanski K, Brownstein BH, Elson CM, Hayden DL, Herndon DN, Lowry SF, Maier RV, Schoenfeld DA, Moldawer LL, Davis RW, Tompkins RG, Baker HV, Bankey P, Billiar T, Brownstein BH, Calvano SE, Camp D, Chaudry I, Cobb JP, Davis RW, Elson CM, Freeman B, Gamelli R, Gibran N, Harbrecht B, Hayden DL, Heagy W, Heimbach D, Herndon DN, Horton J, Hunt J, Laudanski K, Lederer J, Lowry SF, Maier RV, Mannick J, McKinley B, Miller-Graziano C, Mindrinos MN, Minei J, Moldawer LL, Moore E, Moore F, Munford R, Nathens A, O'keefe G, Purdue G, Rahme L, Remick D, Sailors M, Schoenfeld DA, Shapiro M, Silver G, Smith R, Stephanopoulos G, Stormo G, Tompkins RG, Toner M, Warren S, West M, Wolfe S, Xiao W, Young V; Inflammation and Host Response to Injury Large-Scale Collaborative Research Program.
Application of genome-wide expression analysis to human health and disease.
Proc Natl Acad Sci U S A. 2005 Mar 29;102(13):4801-6. Epub 2005 Mar 21.
PMID: 16004567
Toner M, Irimia D.
Blood-on-a-chip.
Annu Rev Biomed Eng. 2005;7:77-103. Review.
PMID: 16136080
Calvano SE, Xiao W, Richards DR, Felciano RM, Baker HV, Cho RJ, Chen RO, Brownstein BH, Cobb JP, Tschoeke SK, Miller-Graziano C, Moldawer LL, Mindrinos MN, Davis RW, Tompkins RG, Lowry SF; Inflamm and Host Response to Injury Large Scale Collab. Res. Program.
A network-based analysis of systemic inflammation in humans.
Nature. 2005 Oct 13;437(7061):1032-7. Epub 2005 Aug 31. Erratum in: Nature. 2005 Dec 1;438(7068):696.
PMID: 16141318
Storey JD, Xiao W, Leek JT, Tompkins RG, Davis RW.
Significance analysis of time course microarray experiments.
Proc Natl Acad Sci U S A. 2005 Sep 6;102(36):12837-42. Epub 2005 Sep 2.
PMID: 16152657
Shen Y, Kim J, Strittmatter EF, Jacobs JM, Camp DG 2nd, Fang R, Tolie N, Moore RJ, Smith RD.
Characterization of the human blood plasma proteome.
Proteomics. 2005 Oct;5(15):4034-45.
PMID: 16237112
De AK, Miller-Graziano CL, Calvano SE, Laudanski K, Lowry SF, Moldawer LL, Remick DG Jr, Rajicic N, Schoenfeld D, Tompkins RG.
Selective activation of peripheral blood T cell subsets by endotoxin infusion in healthy human subjects corresponds to differential chemokine activation.
J Immunol. 2005 Nov 1;175(9):6155-62.
PMID: 16361929
NathensAB, Johnson JL, Minei JP, Moore EE, Shapiro M, Bankey P, Freeman B,
Harbrecht BG, Lowry SF, McKinley B, Moore F, West M, Maier RV; Inflammation and
the Host Response to Injury Investigators.
Inflammation and the Host Response to Injury, a large-scale collaborative project: Patient-Oriented Research Core--standard operating procedures for clinical care. I. Guidelines for mechanical ventilation of the trauma patient.
J Trauma. 2005 Sep;59(3):764-9. Foreward:762-3
PMID: 16478828
Brownstein BH, Logvinenko T, Lederer JA, Cobb JP, Hubbard WJ, Chaudry IH,
Remick DG, Baker HV, Xiao W, Mannick JA.
Commonality and differences in leukocyte gene expression patterns among three models of inflammation and injury.
Physiol Genomics. 2006 Feb 14;24(3):298-309. Epub 2005 Dec 20.
PMID: 16684767
Liu T, Qian WJ, Gritsenko MA, Xiao W, Moldawer LL, Kaushal A, Monroe ME,
Varnum SM, Moore RJ, Purvine SO, Maier RV, Davis RW, Tompkins RG, CampDG 2nd,
Smith RD; Inflammation and the Host Response to Injury Large Scale Collaborative
Research Programm.
High dynamic range characterization of the trauma patient plasma proteome.
Mol Cell Proteomics. 2006 Oct;5(10):1899-913. Epub 2006 May 9.
PMID: 16688078
Minei JP, NathensAB, West M, Harbrecht BG, Moore EE, ShapiroMB, BankeyPE,
Johnson JL, Freeman B, McKinley BA, Moore FA, Maier RV; Inflammation and the
Host Response to Injury Large Scale Collaborative Research Program
Investigators.
Inflammation and the Host Response to Injury, a Large-Scale Collaborative
Project: patient-oriented research core--standard operating procedures for clinical care. II. Guidelines for prevention, diagnosis and treatment of ventilator-associated pneumonia (VAP) in the trauma patient.
J Trauma. 2006 May;60(5):1106-13; discussion 1113.
PMID: 16819346
Klein MB, Silver G, Gamelli RL, GibranNS, Herndon DN, Hunt JL, Tompkins
RG; Inflammation and the Host Response to Injury Investigators.
Inflammation and the host response to injury: an overview of the multicenter study of the genomic and proteomic response to burn injury.
J Burn Care Res. 2006 Jul-Aug;27(4):448-51.
PMID: 16832253
Moore FA, McKinley BA, Moore EE, NathensAB, West M, ShapiroMB, Bankey P,
Freeman B, Harbrecht BG, Johnson JL, Minei JP, Maier RV.
Inflammation and the Host Response to Injury, a large-scale collaborative project: patient-oriented research core--standard operating procedures for clinical care. III. Guidelines for shock resuscitation.
J Trauma. 2006 Jul;61(1):82-9
PMID: 16878882
Sethu P, Moldawer LL, Mindrinos MN, Scumpia PO, Tannahill CL, Wilhelmy J,
Efron PA, Brownstein BH, Tompkins RG, Toner M.
Microfluidic isolation of leukocytes from whole blood for phenotype and gene expression analysis.
Anal Chem. 2006 Aug 1;78(15):5453-61.
PMID: 16887931
Qian WJ, Jacobs JM, Liu T, Camp DG 2nd, Smith RD.
Advances and challenges in liquid chromatography-mass spectrometry-based proteomics profiling for clinical applications.
Mol Cell Proteomics. 2006 Oct;5(10):1727-44. Epub 2006 Aug 3. Review.
PMID: 16917462
West MA, ShapiroMB, NathensAB, Johnson JL, Moore EE, Minei JP, BankeyPE,
Freeman B, Harbrecht BG, McKinley BA, Moore FA, Maier RV.
Inflammation and the host response to injury, a large-scale collaborative project: Patient-oriented research core-standard operating procedures for clinical care. IV. Guidelines for transfusion in the trauma patient.
J Trauma. 2006 Aug;61(2):436-9. No abstract available.
PMID: 17032680
Rajicic N, Finkelstein DM, Schoenfeld DA; Inflammation Host Response to Injury Research Program Investigators.
Survival analysis of longitudinal microarrays.
Bioinformatics. 2006 Nov 1;22(21):2643-9. Epub 2006 Oct 10.
PMID: 17032758
Laudanski K, Miller-Graziano C, Xiao W, Mindrinos MN, Richards DR, De A,
Moldawer LL, Maier RV, Bankey P, Baker HV, Brownstein BH, Cobb JP, Calvano SE,
Davis RW, Tompkins RG, Inflammation and Host Response to Injury Large-Scale
Collaborative Research Program.
Cell-specific expression and pathway analyses reveal alterations in trauma-related human T cell and monocyte pathways.
Proc Natl Acad Sci U S A. 2006 Oct 17; 103(42): 15564-15569. published online
before print October 10, 2006
PMID: 17351437
Silver GM, Klein MB, Herndon DN, Gamelli RL, Gibran NS, Altstein L,
McDonald-Smith GP, Tompkins RG, Hunt JL; The Inflammation and the Host Response
to Trauma, Collaborative Research Program.
Standard operating procedures for the clinical management of patients enrolled in a prospective study of Inflammation and the Host Response to Thermal Injury.
J Burn Care Res. 2007 Mar-Apr;28(2):222-30.
PMID: 17414328
NathensAB, McMurray MK, Cuschieri J, Durr EA, Moore EE, BankeyPE, Freeman
B, Harbrecht BG, Johnson JL, Minei JP, McKinley BA, Moore FA, ShapiroMB, West
MA, Tompkins RG, Maier RV.
The practice of venous thromboembolism prophylaxis in the major trauma patient.
J Trauma. 2007 Mar;62(3):557-62; discussion 562-3.
PMID: 17414612
Klein MB, Hayden D, Elson C, Nathens AB, Gamelli RL, Gibran NS, Herndon DN,
Arnoldo B, Silver G, Schoenfeld D, Tompkins RG.
The association between fluid administration and outcome following major burn: a multicenter study.
Ann Surg. 2007 Apr;245(4):622-8.
PMID: 17592301
Escobar GA, Cheng AM, Moore EE, Johnson JL, Tannahill C, Baker HV, Moldawer LL, Banerjee A.
Stored packed red blood cell transfusion up-regulates inflammatory gene expression in circulating leukocytes.
Ann Surg. 2007 Jul;246(1):129-34
PMID: 17907809
Leek JT, Storey JD
Capturing heterogeneity in gene expression studies by surrogate variable analysis.
PLoS Genet. 2007 Sep 7;3(9):1724-35. Epub 2007 Aug 1.
PMID: 17986522
Lederer JA, Brownstein BH, Lopez MC, Macmillan S, Delisle AJ, Macconmara MP, Choudhry MA, Xiao W, Lekousi S, Cobb JP, Baker HV, Mannick JA, Chaudry IH, and the Inflammation and the Host Response to Injury Collaborative Research Program Participants.
Comparison of Longitudinal Leukocyte Gene Expression after Burn Injury or Trauma-Hemorrhage in Mice.
Physiol Genomics. 2007 Nov 6; [Epub ahead of print]
PMID: 18073622
Harbrecht BG, Minei JP, Shapiro MB, Nathens AB, Moore EE, West MA, Bankey PE, Cuschieri J, Johnson JL, Maier RV and the Inflammation and the Host Response to Injury Large Scale Collaborative Research Project.
Inflammation and the Host Response to Injury, a Large-Scale Collaborative Project: Patient-Oriented Research Core—Standard Operating Procedures for Clinical Care. VI. Blood Glucose Control in the Critically Ill Trauma Patient.
J Trauma. 2007 Sep;63(3):703-8
PMID: 18090028
Shapiro MB, West MA, Nathens AB, Harbrecht BG, Moore FA, Bankey PE, Freeman B, Johnson JL, McKinley BA, Minei JP, Moore EE, Maier RV and the Inflammation and the Host Response to Injury Large Scale Collaborative Research Project.
Inflammation and the Host Response to Injury, a Large-Scale Collaborative Project: Patient-Oriented Research Core—Standard Operating Procedures for Clinical Care. V. Guidelines for Sedation and Analgesia During Mechanical Ventilation General Overview
J Trauma 2007;63(4);945-50.
PMID: 18375483
Russom A, Sethu P, Irimia D, Mindrinos MN, Calvano SE, Garcia I, Finnerty C, Tannahill C, Abouhamze A, Wilhelmy J, López MC, Baker HV, Herndon DN, Lowry SF, Maier RV, Davis RW, Moldawer LL, Tompkins RG, Toner M; Inflammation and Host Response to Injury Large Scale Collaborative Research Program.
Microfluidic leukocyte isolation for gene expression analysis in critically ill hospitalized patients.
Clin Chem. 2008 May;54(5):891-900. Epub 2008 Mar 28.
PMID: 18453552
Polpitiya AD, Qian WJ, Jaitly N, Petyuk VA, Adkins JN, Camp DG 2nd, Anderson GA, Smith RD.
DAnTE: a statistical tool for quantitative analysis of -omics data.
Bioinformatics. 2008 Jul 1;24(13):1556-8. Epub 2008 May 3.
PMID: 18548133
Finnerty CC, Jeschke MG, Herndon DN, Gamelli R, Gibran N, Klein M, Silver G, Arnoldo B, Remick D, Tompkins RG.
Temporal cytokine profiles in severely burned patients: a comparison of adults and children
Mol Med. 2008 Jun 9. [Epub ahead of print]
PMID: 18849816
Inflammation and the host response to injury a large-scale collaborative project: patient-oriented research core standard operating procedure for clinical care X. Guidelines for venous thromboembolism prophylaxis in the trauma patient.
Cuschieri J, Freeman B, O'Keefe G, Harbrecht BG, Bankey P, Johnson JL, Minei JP, Sperry J, West M, Nathens A, Moore EE, Maier RV; Inflammation and the Host Response to Injury Collaborative Research Program.
J Trauma. 2008 Oct;65(4):944-50
PMID: 19053531
Qian WJ, Liu T, Petyuk VA, Gritsenko MA, Petritis BO, Polpitiya AD, Kaushal A, Xiao W, Finnerty CC, Jeschke MG, Jaitly N, Monroe ME, Moore RJ, Moldawer LL, Davis RW, Tompkins RG, Herndon DN, Camp DG, Smith RD; Inflammation and the Host Response to Injury Large Scale Collaborative Research Program.
Large-scale multiplexed quantitative discovery proteomics enabled by the use of an (18)o-labeled "universal" reference sample.
J Proteome Res. 2009 Jan;8(1):290-9.
PMID: 19077651
West MA, Moore EE, Shapiro MB, Nathens AB, Cuschieri J, Johnson JL, Harbrecht BG, Minei JP, Bankey PE, Maier RV; Inflammation and the Host Response to Injury Collaborative Research Program.
Inflammation and the host response to injury, a large-scale collaborative project: patient-oriented research core--standard operating procedures for clinical care VII--Guidelines for antibiotic administration in severely injured patients.
J Trauma. 2008 Dec;65(6):1511-9.
PMID: 19077652
O'Keefe GE, Shelton M, Cuschieri J, Moore EE, Lowry SF, Harbrecht BG, Maier RV; Inflammation and the Host Response to Injury Collaborative Research Program.
Inflammation and the host response to injury, a large-scale collaborative project: patient-oriented research core--standard operating procedures for clinical care VIII--Nutritional support of the trauma patient.
J Trauma. 2008 Dec;65(6):1520-8.
PMID: 19359917
Sperry JL. Frankel HL. Nathens AB. O'keefe GE. Cuschieri J. Moore EE. Maier RV. Minei JP. Inflammation and the Host Response to Injury Investigators.
Characterization of persistent hyperglycemia: what does it mean postinjury?
Journal of Trauma-Injury Infection & Critical Care. 66(4):1076-82, 2009 Apr.
PMID: 19529777
Hayden D, Lazar P, Schoenfeld D; Inflammation and the Host Response to Injury Investigators.
Assessing statistical significance in microarray experiments using the distance between microarrays.
PLoS One. 2009 Jun 16;4(6):e5838.
PMID: 19593405
Warren HS. Elson CM. Hayden DL. Schoenfeld DA. Cobb JP. Maier RV. Moldawer LL. Moore EE. Harbrecht BG. Pelak K. Cuschieri J. Herndon DN. Jeschke MG. Finnerty CC. Brownstein BH. Hennessy L. Mason PH. Tompkins RG; and The Inflammation and the Host Response to Injury Large-Scale Collaborative Research Program.
A genomic score prognostic of outcome in trauma patients.
Molecular Medicine. 15(7-8):220-227, 2009 Jul-Aug.
PMID: 19618375
Rajicic N, Finkelstein DM, Schoenfeld DA; Inflammation and Host Response to Injury Research Program Investigators.
Analysis of the relationship between longitudinal gene expressions and ordered categorical event data.
Stat Med. 2009 Sep 30;28(22):2817-32
PMID: 19667895
Evans HL, Cuschieri J, Moore EE, Shapiro MB, Nathens AB, Johnson JL, Harbrecht BG, Minei JP, Bankey PE, Maier RV, West MA; Inflammation and Host Response to Injury Investigators.
Inflammation and the host response to injury, a Large-Scale Collaborative Project: patient-oriented research core standard operating procedures for clinical care IX. Definitions for complications of clinical care of critically injured patients.
J Trauma. 2009 Aug;67(2):384-8.
PMID: 19730236
Cobb JP, Moore EE, Hayden DL, Minei JP, Cuschieri J, Yang J, Li Q, Lin N, Brownstein BH, Hennessy L, Mason PH, Schierding WS, Dixon DJ, Tompkins RG, Warren HS, Schoenfeld DA, Maier RV.
Validation of the Riboleukogram to Detect Ventilator-Associated Pneumonia After Severe Injury.
Ann Surg. 2009 Aug 27. [Epub ahead of print]
PMID: 19741387
Neal MD. Cushieri J. Rosengart MR. Alarcon LH. Moore EE. Maier RV. Minei JP. Billiar TR. Peitzman AB. Sperry JL. Inflammation and Host Response to Injury Investigators.
Preinjury statin use is associated with a higher risk of multiple organ failure after injury: a propensity score adjusted analysis.
Journal of Trauma-Injury Infection & Critical Care. 67(3):476-82; discussion 482-4, 2009 Sep.
PMID: 20023796
Irimia D, Mindrinos M, Russom A, Xiao W, Wilhelmy J, Wang S, Heath JD, Kurn N, Tompkins RG, Davis RW, Toner M.
Genome-wide transcriptome analysis of 150 cell samples.
Integr Biol (Camb). 2009 Jan;1(1):99-107. Epub 2008 Nov 12
PMID: 20698492
Qian WJ, Petritis BO, Kaushal A, Finnerty CC, Jeschke MG, Monroe ME, Moore RJ, Schepmoes AA, Xiao W, Moldawer LL, Davis RW, Tompkins RG, Herndon DN, Camp DG 2nd, Smith RD; Inflammation and the Host Response to Injury Large Scale Collaborative Research Program.
Plasma proteome response to severe burn injury revealed by 18O-labeled "universal" reference-based quantitative proteomics.
J Proteome Res. 2010 Sep 3;9(9):4779-89.
PMID: 20802500
Kotz KT, Xiao W, Miller-Graziano C, Qian WJ, Russom A, Warner EA, Moldawer LL, De A, Bankey PE, Petritis BO, Camp DG 2nd, Rosenbach AE, Goverman J, Fagan SP, Brownstein BH, Irimia D, Xu W, Wilhelmy J, Mindrinos MN, Smith RD, Davis RW, Tompkins RG, Toner M; Inflammation and the Host Response to Injury Collaborative Research Program.
Clinical microfluidics for neutrophil genomics and proteomics.
Nat Med. 2010 Sep;16(9):1042-7. Epub 2010 Aug 29.
PMID: 21317363
Xu W, Seok J, Mindrinos MN, Schweitzer AC, Jiang H, Wilhelmy J, Clark TA, Kapur K, Xing Y, Faham M, Storey JD, Moldawer LL, Maier RV, Tompkins RG, Wong WH, Davis RW, Xiao W; Inflammation and Host Response to Injury Large-Scale Collaborative Research Program.
Human transcriptome array for high-throughput clinical studies.
Proc Natl Acad Sci U S A. 2011 Mar 1;108(9):3707-12
PMID: 22020243
Minei JP, Cuschieri J, Sperry J, Moore EE, West MA, Harbrecht BG, O'Keefe GE, Cohen MJ, Moldawer LL, Tompkins RG, Maier RV; Inflammation and the Host Response to Injury Collaborative Research Program.
The changing pattern and implications of multiple organ failure after blunt injury with hemorrhagic shock.
Crit Care Med. 2012 Apr;40(4):1129-35.
PMID: 22110166
Xiao W, Mindrinos MN, Seok J, Cuschieri J, Cuenca AG, Gao H, Hayden DL, Hennessy L, Moore EE, Minei JP, Bankey PE, Johnson JL, Sperry J, Nathens AB, Billiar TR, West MA, Brownstein BH, Mason PH, Baker HV, Finnerty CC, Jeschke MG, López MC, Klein MB, Gamelli RL, Gibran NS, Arnoldo B, Xu W, Zhang Y, Calvano SE, McDonald-Smith GP, Schoenfeld DA, Storey JD, Cobb JP, Warren HS, Moldawer LL, Herndon DN, Lowry SF, Maier RV, Davis RW, Tompkins RG; Inflammation and Host Response to Injury Large-Scale Collaborative Research Program.
A genomic storm in critically injured humans.
J Exp Med. 2011 Dec 19;208(13):2581-90. Epub 2011 Nov 21.
PMID: 22470077
Cuschieri J, Johnson JL, Sperry J, West MA, Moore EE, Minei JP, Bankey PE, Nathens AB, Cuenca AG, Efron PA, Hennessy L, Xiao W, Mindrinos MN, McDonald-Smith GP, Mason PH, Billiar TR, Schoenfeld DA, Warren HS, Cobb JP, Moldawer LL, Davis RW, Maier RV, Tompkins RG; Inflammation and Host Response to Injury, Large Scale Collaborative Research Program.
Benchmarking outcomes in the critically injured trauma patient and the effect of implementing standard operating procedures.
Ann Surg. 2012 May;255(5):993-9.
Administration Core
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