Table S1percent Identities Ofskj1 (KM066975), SKJ2 (KM189818) and SKJ3 (KM189819) Isolatesunder

Table S1Percent identities ofSKJ1 (KM066975), SKJ2 (KM189818) and SKJ3 (KM189819) isolatesunder study with other begomoviruses atnucleotide (nt) of DNA-A and at amino acid (aa) of various ORFs obtained byGenomatixDiAlign program.

Accession No. / Begomovirus / Host / Location / DNA A
(nt) / V2 / V1 / C3 / C2 / C1 / C4
(aa) / (aa) / (aa) / (aa) / (aa) / (aa)
KM189818 / SKJ2* / Jatropha curcas / India / 99 / 100 / 100 / 100 / 100 / 100 / 100
KM189819 / SKJ3* / J. curcas / India / 99 / 100 / 100 / 100 / 100 / 100 / 100
HM230683 / JMIV / J. curcas / India / 81 / 74 / 88 / 91 / 94 / 87 / 72
GQ924760 / JCMV / J. curcas / India / 80 / 80 / 87 / 78 / 80 / 87 / 81
AJ314739 / ICMV / Manihotesculenta / India / 80 / 79 / 90 / 78 / 82 / 87 / 78
AJ575819 / ICMV / M. esculenta / India / 78 / 82 / 89 / 79 / - / 85 / 78
AY730035 / ICMV / M. esculenta / India / 78 / 78 / 90 / 80 / 84 / 86 / 76
JN692494 / JCMV / J. curcas / India / 78 / 80 / 87 / 77 / 76 / 85 / 80
JX518289 / JCMV / J. curcas / Singapore / 77 / 81 / 89 / 77 / 79 / 85 / 78
JF496657 / JCMV / J. curcas / India / 76 / 78 / 88 / 77 / 78 / 86 / 76
Z24758 / ICMV / M. esculenta / Malawi / 75 / 76 / 89 / 81 / 82 / 84 / 74
AJ890225 / SrLCMV / M. esculenta / India / 73 / 82 / 88 / 82 / 86 / 79 / 49
AJ607394 / SrCMV / M. esculenta / India / 73 / 81 / 88 / 82 / 85 / 79 / 47
AJ314737 / SrLCMV / M. esculenta / Sri Lanka / 72 / 80 / 90 / 82 / 88 / 79 / 48
AJ890226 / SrLCMV / M. esculenta / India / 72 / 81 / 87 / 79 / 86 / 79 / 50
AJ579307 / SrCMV / M. esculenta / India / 72 / 81 / 88 / 82 / 85 / 79 / 47
KC952005 / TLCV / Solanumlycopersicum / India / 68 / 68 / 86 / 63 / 69 / 77 / 61
EU910140 / TLCV / S. lycopersicum / India / 66 / 72 / 83 / 60 / 68 / 80 / 61
KC852148 / EuLCV / Euphorbia pulcherrima / China / 64 / 62 / 83 / 64 / 66 / 80 / 63
KC161185 / EuLCV / Passifloraedulis / Taiwan / 64 / 62 / 83 / 61 / 65 / 80 / 65
AJ558121 / EuLCV / E. pulcherrima / China / 64 / 62 / 83 / 64 / 66 / 80 / 63
JN053429 / ACMV / J. curcas / Kenya / 61 / 69 / 71 / 64 / 60 / 45 / 45
JN053428 / ACMV / J. curcas / Kenya / 60 / 69 / 71 / 64 / 60 / 45 / 45
JN053454 / EACMV / J. curcas / Kenya / 56 / 55 / 71 / 69 / 62 / 53 / 48
JN053455 / EACMV / J. curcas / Kenya / 56 / 55 / 71 / 69 / 62 / 48 / 46
NC_019034 / JLCNV / J. curcas / Nigerian / 56 / 48 / 67 / 60 / 57 / 57 / 58

Abbreviations:JMIV=Jatropha mosaic India virus, ICMV=Indian cassava mosaic virus, JCMV= Jatropha curcas mosaic virus, SrLCMV=Sri Lankan cassava mosaic virus, EuLCV=Euphorbia leaf curl virus,TLCV=Tomato leaf curl virus,ACMV=African cassava mosaic virus, EACMV=East African cassava mosaic virusandJMNV=Jatropha mosaic Nigerian virus.