Table S1.RNA-Sequencing Raw Reads and Mapping Statistics

SUPPLEMENTARY INFORMATION

Table S1.RNA-Sequencing raw reads and mapping statistics.

Sample ID / Total Reads / Reads Mapped Uniquea / % Mapped All / % Mapped Unique / Unmapped Reads
All / Unmapped Reads Unique / Mapped Multipleb
BB2204 broth / 35306504 / 34040651 / 98.01% / 96.76% / 702014 / 1265853 / 563839
BB2000 broth (fliL control) / 19885858 / 19154833 / 98.02% / 96.32% / 393864 / 731025 / 337161
BB2000 agar / 21920064 / 21211816 / 97.96% / 96.41% / 446419 / 708248 / 261829
BB2000 broth (swarmer control) / 24950582 / 24200005 / 98.12% / 96.99% / 467905 / 750577 / 282672

a Based on 2nt mismatch

b Reads that mapped to more than one location on the genome.

Table S2. All significantly differentially expressed genes in swarmer cell transcriptome compared to swimmer cell transcriptome.

Locus tag / Gene / Product / Fold-Change
PMI1629 / fliE / flagellar hook-basal body complex protein / 222.21
PMI1651 / flgE / flagellar hook protein / 188.70
PMI1653 / flgC / flagellar basal-body rod protein / 183.85
PMI1630 / fliF / flagellar MS-ring protein / 176.34
PMI1654 / flgB / flagellar basal body rod protein / 161.84
PMI1618 / fliA / flagellar biosynthesis sigma factor / 157.71
PMI1961 / ccm / membrane protein / 143.67
PMI1652 / flgD / basal-body rod modification protein / 126.18
PMI0993 / NA / lipoprotein / 123.58
PMI1649 / flgG / flagellar basal-body rod protein (distal rod protein) / 106.70
PMI1631 / fliG / flagellar motor switch protein G / 105.74
PMI1650 / flgF / flagellar basal-body rod protein / 101.75
PMI1638 / fliN / flagellar motor switch protein / 96.66
PMI1620 / flaA / flagellin 1 / 82.22
PMI0994 / NA / lipoprotein / 75.58
PMI2808 / NA / methyl-accepting chemotaxis protein / 72.94
PMI1634 / fliJ / flagellar biosynthesis chaperone / 72.21
PMI1628 / NA / metalloelastase / 71.00
PMI2834 / aad / amino acid deaminase / 69.92
PMI1621 / fliD / flagellar capping protein / 67.94
PMI0289 / pgmB / beta-phosphoglucomutase / 67.79
PMI0290 / NA / glycosyl hydrolase / 60.48
PMI1635 / fliK / flagellar hook-length control protein / 56.15
PMI0288 / rafY / glycoporin / 56.01
PMI1632 / fliH / flagellar assembly protein H / 51.11
PMI1645 / flgK / flagellar hook-associated protein 1 / 51.07
PMI1648 / flgH / flagellar basal body L-ring protein / 48.06
PMI1644 / flgL / flagellar hook-associated protein / 40.45
PMI1617 / fliZ / flagella biosynthesis protein / 39.98
PMI1359 / NA / outer membrane protein / 39.00
PMI1637 / fliM / flagellar motor switch protein / 36.70
PMI1636 / fliL / flagellar basal body-associated protein / 36.66
PMI2898 / NA / amino acid ABC transporter / 34.56
PMI3460 / NA / lipoprotein / 33.39
PMI1660 / flhB / flagellar biosynthesis protein / 32.91
PMI1646 / flgJ / flagellar rod assembly protein / 32.91
PMI0842 / NA / putative outer membrane receptor / 32.32
PMI0833 / NA / hypothetical protein / 32.27
PMI1647 / flgI / flagellar basal body P-ring protein / 30.94
PMI0992 / NA / hypothetical protein / 29.00
PMI2149 / NA / exported amino acid deaminase / 28.61
PMI0291 / treB / PTS system trehalose(maltose)-specific transporter / 27.74
PMI1623 / fliT / flagella protein / 27.21
PMI1622 / fliS / flagellar protein / 26.56
PMI1442 / NA / hypothetical protein / 26.43
PMI1659 / flhA / flagellar biosynthesis protein / 25.56
PMI1245 / NA / hypothetical protein / 25.00
PMI0176 / NA / Iron transport / 24.07
PMI1662 / cheY / chemotaxis response regulator / 23.76
PMI1722 / NA / phage protein / 23.58
PMI3115 / umoA / upregulator of flagellar operon / 22.91
PMI1318 / nlpA / lipoprotein-28 / 21.86
PMI1945 / ireA / iron-regulated outer membrane virulence protein / 20.39
PMI1723 / NA / phage protein (endopeptidase/lysis protein) / 20.17
PMI1640 / fliP / flagellar biosynthetic protein / 19.94
PMI1655 / flgA / flagella basal body P-ring formation protein / 17.45
PMI3085 / NA / hypothetical protein / 17.45
PMI3237 / argC / N-acetyl-gamma-glutamyl-phosphate reductase / 17.24
PMI2400 / NA / phage lysis protein (holin) / 17.03
PMI2809 / NA / methyl-accepting chemotaxis protein / 16.88
PMI2497 / NA / hypothetical protein / 16.21
PMI1664 / cheR / chemotaxis methyltransferase / 16.10
PMI3036 / sodA / superoxide dismutase [Mn] / 16.04
PMI3380 / NA / hypothetical protein / 15.99
PMI2121 / NA / phosphosugar-binding regulatory protein / 15.93
PMI1666 / NA / methyl-accepting chemotaxis protein / 15.87
PMI2056 / hpmB / hemolysin activator protein / 14.42
PMI0875 / ndh / NADH dehydrogenase / 13.93
PMI1642 / fliR / flagellar biosynthetic protein / 13.50
PMI0175 / NA / iron transport / 13.24
PMI2833 / NA / endoribonuclease / 12.76
PMI1437 / NA / iron utilization protein / 12.39
PMI1663 / cheB / chemotaxis response regulator protein / 12.20
PMI0272 / mtrF / efflux pump component / 12.12
PMI1672 / flhD / transcriptional activator / 11.95
PMI1661 / cheZ / chemotaxis regulator / 11.93
PMI0182 / NA / transcriptional regulator / 11.83
PMI1665 / NA / methyl-accepting chemotaxis protein / 11.79
PMI2057 / hpmA / hemolysin / 11.56
PMI3046 / NA / oxidoreductase / 11.41
PMI1840 / NA / lipoprotein / 11.34
PMI3052 / asnA / asparagine synthetase / 11.29
PMI1868 / hmp / flavohemoprotein / 11.24
PMI1479 / nirB / nitrite reductase [NAD(P)H] large subunit / 9.94
PMI0739 / NA / hypothetical protein / 9.92
PMI3177 / kbl / 2-amino-3-ketobutyrate coenzyme A ligase / 9.87
PMI0331 / NA / ABC transporter, substrate-binding protein / 9.66
PMI1667 / cheW / purine-binding chemotaxis protein / 9.50
PMI0174 / NA / iron transport / 9.24
PMI3457 / argI / ornithine carbamoyltransferase subunit I / 9.11
PMI1463 / NA / aminotransferase / 9.04
PMI1669 / motB / chemotaxis protein (motility protein B) / 8.94
PMI3238 / argB / acetylglutamate kinase / 8.88
PMI2157 / fruK / 1-phosphofructokinase / 8.64
PMI1447 / NA / hypothetical protein / 8.51
PMI1540 / NA / transcriptional regulator / 8.46
PMI1056 / NA / TRAP-type transport system substrate-binding protein / 8.39
PMI1668 / cheA / chemotaxis protein / 8.27
PMI1944 / NA / hypothetical protein / 8.25
PMI1670 / motA / flagellar motor protein / 8.10
PMI2957 / NA / iron ABC transporter, substrate-binding protein / 8.07
PMI2380 / NA / methyl-accepting chemotaxis protein / 7.95
PMI1671 / flhC / transcriptional activator / 7.85
PMI0740 / NA / probable ATPase / 7.64
PMI3178 / tdh / L-threonine 3-dehydrogenase / 7.52
PMI1902 / recN / recombination and repair protein / 7.50
PMI0030 / exbD / biopolymer transport protein / 7.39
PMI0834 / NA / hypothetical protein / 7.33
PMI1656 / flgM / anti-sigma28 factor / 7.31
PMI2207 / NA / fimbrial operon regulator / 7.00
PMI1414 / sufC / cysteine desulfurase ATPase component / 6.88
PMI0995 / NA / ATP-binding protein / 6.80
PMI2411 / NA / pyridoxal-dependent decarboxylase / 6.55
PMI0231 / NA / citrate lyase beta chain / 6.51
PMI1246 / NA / hypothetical protein / 6.50
PMI1657 / flgN / flagella synthesis protein / 6.46
PMI1721 / NA / phage protein / 6.34
PMI1619 / fliC2 / flagellin 2 / 6.30
PMI0029 / exbB / biopolymer transport protein / 6.25
PMI1835 / cysP / thiosulfate transporter subunit / 6.20
PMI2388 / terZ / tellurite resistance protein / 6.18
PMI1849 / ndk / nucleoside diphosphate kinase / 6.12
PMI3401 / sfsB / sugar fermentation stimulation protein / 6.10
PMI1415 / sufB / cysteine desulfurase activator complex subunit / 6.10
PMI0106 / cyoC / cytochrome O ubiquinol oxidase subunit III / 5.99
PMI1517 / NA / hypothetical protein / 5.97
PMI2246 / cysD / sulfate adenylyltransferase subunit 2 / 5.83
PMI0105A / cyoD / cytochrome O ubiquinol oxidase protein / 5.71
PMI0743 / NA / lipoprotein / 5.70
PMI0741 / NA / hypothetical protein / 5.55
PMI0986 / NA / hypothetical protein / 5.52
PMI1438 / NA / hypothetical protein / 5.50
PMI0742 / NA / hypothetical protein / 5.40
PMI1720 / NA / phage protein / 5.39
PMI1726 / NA / phage antitermination protein / 5.33
PMI2950 / NA / outer membrane protein / 5.25
PMI1639 / fliO / flagellar protein / 5.23
PMI2421 / NA / phospholipid-binding protein / 5.11
PMI2978 / nanE / N-acetylmannosamine-6-phosphate 2-epimerase / 5.04
PMI1774 / NA / alanine racemase / 5.04
PMI2396 / NA / hypothetical protein / 5.04
PMI0599 / modC / molybdate transporter ATP-binding protein / 4.92
PMI3045 / NA / iron-sulfur cluster-binding protein / 4.88
PMI1416 / sufA / scaffold protein for iron-sulfur cluster assembly / 4.76
PMI0414 / nrdE / ribonucleoside-diphosphate reductase alpha chain / 4.69
PMI1958 / NA / DNA-damage-inducible protein / 4.62
PMI3409 / greA / transcription elongation factor / 4.60
PMI2387 / terA / tellurite resistance protein / 4.57
PMI1441 / endA / endonuclease I precursor / 4.55
PMI1054 / NA / GntR-family transcriptional regulator / 4.52
PMI3406 / rpmA / 50S ribosomal protein L27 / 4.51
PMI0751 / NA / RHS accessory genetic element (VgrG-like protein) / 4.51
PMI1717 / NA / phage protein / 4.50
PMI1714 / NA / phage protein / 4.44
PMI2853 / tag / DNA-3-methyladenine DNA glycosylase I / 4.38
PMI0735 / NA / hypothetical protein / 4.14
PMI1055 / NA / TRAP-type C4-dicarboxylate transport system / 4.11
PMI1718 / NA / phage protein / 4.09
PMI1710 / NA / phage protein / 4.08
PMI0413 / nrdF / ribonucleoside-diphosphate reductase beta chain / 4.02
PMI1209 / disA / tyrosine decarboxylase / 3.97
PMI0737 / NA / hypothetical protein / 3.95
PMI3083 / NA / multidrug efflux protein / 3.50
PMI0223 / NA / alpha-keto acid decarboxylase / 0.03
PMI0031 / hyb0 / hydrogenase 2 small subunit / 0.03
PMI0070 / NA / hypothetical protein / 0.03
PMI0034 / hybC / hydrogenase 2 large subunit / 0.03
PMI1956 / NA / hypothetical protein / 0.03
PMI2660 / caiF / DNA-binding transcriptional activator CaiF / 0.03
PMI3001 / NA / fimbrial protein / 0.03
PMI2524 / hyfE / hydrogenase 4 membrane subunit / 0.03
PMI1225 / NA / ABC-2 type transporter / 0.03
PMI1804 / NA / ferritin-like protein / 0.02
PMI0033 / hybB / putative hydrogenase 2 b cytochrome subunit / 0.02
PMI0069 / NA / putative oxidoreductase / 0.02
PMI1814 / phsA / thiosulfate reductase precursor / 0.02
PMI1223 / NA / HlyD-family secretion protein / 0.02
PMI1395 / NA / hypothetical protein / 0.02
PMI3209 / emrD / multidrug resistance protein D / 0.02
PMI0068 / NA / hypothetical protein / 0.02
PMI1011 / NA / hypothetical protein / 0.01
PMI1224 / NA / ABC-type multidrug transport system / 0.01
PMI1406 / gadC / probable glutamate/gamma-aminobutyrate antiporter / 0.01
PMI0781 / rmf / ribosome modulation factor / 0.01
PMI2662 / NA / chitin binding protein / 0.01

Table S3. All significantly differentially expressed genes in fliL pseudoswarmer transcriptome compared to broth-grown wild-type transcriptome.

Locus tag / Gene / Product / Fold-Change
PMI2722 / NA / microcompartments protein / 15.31
PMI2718 / NA / hypothetical protein / 14.60
PMI2720 / NA / microcompartments protein / 9.68
PMI2719 / NA / aldehyde-alcohol dehydrogenase / 7.57
PMI2721 / NA / microcompartments protein / 7.22
PMI0536 / uca / major fimbrial subunit / 6.93
PMI1722 / NA / phage protein / 5.42
PMI0534 / NA / fimbrial usher protein / 4.70
PMI0535 / NA / fimbrial chaperone / 3.97
PMI3091 / NA / fimbrial subunit / 3.72
PMI1721 / NA / phage protein / 3.70
PMI1250 / NA / transcriptional regulator / 3.65
PMI1720 / NA / phage protein / 3.43
PMI2987 / NA / hypothetical protein / 3.22
PMI1180 / NA / methyl-accepting chemotaxis protein / 3.21
PMI2399 / tetAJ / tetracycline resistance protein (MFS-family transporter) / 3.01
PMI1647 / flgI / flagellar basal body P-ring protein / 2.97
PMI1650 / flgF / flagellar basal-body rod protein / 2.90
PMI1710 / NA / phage protein / 2.80
PMI1025 / sitC / iron ABC transporter, membrane protein / 2.69
PMI1719 / NA / phage protein / 2.63
PMI2916 / NA / acetyltransferase / 2.58
PMI0068 / NA / hypothetical protein / 2.50
PMI2716 / NA / propanediol utilization protein (dehydratase) / 2.45
PMI1712 / NA / phage protein / 2.35
PMI0729 / aphA / acid phosphatase/phosphotransferase / 2.31
PMI2717 / NA / propanediol utilization protein (alcohol dehydrogenase) / 2.23
PMI0067 / NA / oxidoreductase, Fe-S subunit / 2.10
PMI2728 / atfA / major subunit of type 1 fimbria / 2.09
PMI0781 / rmf / ribosome modulation factor / 2.06
PMI0857 / rpmF / 50S ribosomal protein L32 / 2.05
PMI0031 / hyb0 / hydrogenase 2 small subunit / 2.00
PMI3263 / rpmC / 50S ribosomal protein L29 / 1.99
PMI1017 / NA / hypothetical protein / 1.99
PMI0643 / cdd / cytidine deaminase / 1.94
PMI0190 / afuA / ferric ABC transporter, iron-binding protein / 1.86
PMI2882 / glnA / glutamine synthetase / 1.85
PMI3234 / NA / hypothetical protein / 1.85
PMI0033 / hybB / putative hydrogenase 2 b cytochrome subunit / 1.84
PMI2057 / hpmA / hemolysin / 0.57
PMI2254 / mdeA / methionine gamma-lyase / 0.55
PMI2268 / NA / short chain dehydrogenase / 0.51
PMI1938 / NA / hypothetical protein / 0.50
PMI3579 / NA / hypothetical protein / 0.50
PMI0277 / zapC / type I secretion protein / 0.50
PMI2256 / NA / oxidoreductase / 0.49
PMI0144 / NA / putative GTP-binding protein YjiA / 0.49
PMI0407 / emrR / transcriptional repressor MprA / 0.49
PMI0851 / NA / hypothetical protein / 0.47
PMI0344 / NA / metallo-beta-lactamase superfamily protein / 0.47
PMI1880 / pmfE / minor fimbrial subunit / 0.47
PMI0611 / moaC / molybdenum cofactor biosynthesis protein C / 0.47
PMI2382 / NA / phosphotransferase/phosphoserine phosphatase / 0.47
PMI0782 / fabA / 3-hydroxydecanoyl-(acyl carrier protein) dehydratase / 0.46
PMI1465 / NA / fimbrial adhesin / 0.46
PMI2495 / holD / DNA polymerase III subunit psi / 0.46
PMI1598 / yidA / phosphatase / 0.45
PMI3680 / mtgA / monofunctional biosynthetic peptidoglycan transglycosylase / 0.45
PMI1081 / pth / peptidyl-tRNA hydrolase / 0.44
PMI1466 / NA / fimbrial outer membrane usher protein / 0.44
PMI2931 / NA / hypothetical protein / 0.44
PMI3511 / deoR / deoxyribose operon repressor / 0.43
PMI2518 / hycI / hydrogenase 3 maturation protease / 0.42
PMI1100 / rimJ / ribosomal-protein-S5-alanine N-acetyltransferase / 0.41
PMI1294 / NA / MFS-family transporter / 0.40
PMI2652 / fixB / electron transfer flavoprotein alpha subunit for carnitine metabolism / 0.40
PMI0743 / NA / lipoprotein / 0.40
PMI0250 / NA / lipoprotein / 0.39
PMI0276 / zapD / type I secretion outer membrane protein / 0.38
PMI1058 / budB / acetolactate synthase / 0.37
PMI3295 / hdfR / transcriptional regulator HdfR / 0.36
PMI0092 / rbsA / D-ribose transporter ATP binding protein / 0.36
PMI1278 / NA / hypothetical protein / 0.36
PMI0142 / cstA / carbon starvation protein / 0.36
PMI1682 / ttrC / tetrathionate reductase subunit C / 0.36
PMI2381 / NA / methyl-accepting chemotaxis protein / 0.35
PMI2808 / NA / methyl-accepting chemotaxis protein / 0.35
PMI1494 / NA / LysR-family transcriptional regulator / 0.35
PMI2662 / NA / chitin binding protein / 0.35
PMI0413 / nrdF / ribonucleoside-diphosphate reductase beta chain / 0.35
PMI1059 / budA / alpha-acetolactate decarboxylase / 0.32
PMI0806 / NA / hydrolase / 0.31
PMI2152 / arsB / arsenical pump membrane protein / 0.30
PMI3172 / NA / lipopolysaccharide core biosynthesis glycosyl transferase / 0.29
PMI1440 / NA / hypothetical protein / 0.26
PMI1324 / NA / lipoprotein / 0.25
PMI2651 / fixC / putative oxidoreductase FixC / 0.24
PMI2701 / NA / type III secretion system protein / 0.22
PMI2781 / thiG / thiazole biosynthesis / 0.21
PMI1623 / fliT / flagella protein / 0.20
PMI2653 / fixA / putative electron transfer flavoprotein FixA / 0.20
PMI1543 / NA / hypothetical protein / 0.19
PMI2809 / NA / methyl-accepting chemotaxis protein / 0.18
PMI2972 / NA / hypothetical protein / 0.18
PMI1638 / fliN / flagellar motor switch protein FliN / 0.18
PMI2943 / NA / ABC transporter, ATP-binding protein / 0.17
PMI0176 / NA / iron transport / 0.16
PMI3003 / NA / fimbrial operon regulator / 0.16
PMI1468 / NA / fimbrial subunit / 0.16
PMI2908 / NA / beta-ketoacyl-ACP synthase / 0.15
PMI0578 / NA / MFS-family transporter / 0.15
PMI2030 / NA / toxin transporter / 0.15
PMI1637 / fliM / flagellar motor switch protein FliM / 0.15
PMI1644 / flgL / flagellar hook-associated protein 3 (hook-filament junction protein) / 0.14
PMI1662 / cheY / chemotaxis response regulator / 0.13
PMI1661 / cheZ / chemotaxis regulator CheZ / 0.10
PMI1663 / cheB / chemotaxis response regulator protein-glutamate methylesterase / 0.09
PMI1622 / fliS / flagellar protein FliS / 0.09
PMI2813 / aer / aerotaxis receptor / 0.08
PMI0182 / NA / transcriptional regulator / 0.07
PMI1667 / cheW / purine-binding chemotaxis protein / 0.07
PMI1657 / flgN / flagella synthesis protein / 0.06
PMI1656 / flgM / anti-sigma28 factor FlgM / 0.06
PMI1664 / cheR / chemotaxis methyltransferase CheR / 0.05
PMI1645 / flgK / flagellar hook-associated protein 1 / 0.05
PMI1668 / cheA / chemotaxis protein CheA / 0.04
PMI1665 / NA / methyl-accepting chemotaxis protein / 0.03
PMI1669 / motB / chemotaxis protein (motility protein B) / 0.02
PMI1666 / NA / methyl-accepting chemotaxis protein / 0.02
PMI1670 / motA / flagellar motor protein MotA / 0.02
PMI1621 / fliD / flagellar capping protein / 0.01
PMI1620 / fliA / flagellin 1 / 0.01

Table S4. All genes differentially expressed greater than 2-fold or less than 0.5 (p < 0.05) in fliL pseudoswarmer transcriptome versus wild-type swarmer transcriptome.

Locus tag / Gene / Product / FC
PMI1406 / gadC / glutamate/gamma-aminobutyrate antiporter (acid sensitivity) / 83.36
PMI0781 / rmf / ribosome modulation factor / 77.14
PMI1011 / NA / hypothetical protein / 73.96
PMI1224 / NA / ABC-type multidrug transport system / 73.32
PMI0068 / NA / hypothetical protein / 71.61
PMI2221 / NA / fimbrial outer membrane usher protein / 67.24
PMI0033 / hybB / putative hydrogenase 2 b cytochrome subunit / 60.59
PMI1804 / NA / ferritin-like protein / 53.81
PMI2662 / NA / chitin binding protein / 52.25
PMI3209 / emrD / multidrug resistance protein D / 49.74
PMI0069 / NA / putative oxidoreductase / 47.71
PMI1225 / NA / ABC-2 type transporter / 45.85
PMI1395 / NA / hypothetical protein / 43.30
PMI1223 / NA / HlyD-family secretion protein / 43.30
PMI1816 / phsC / thiosulfate reductase cytochrome b subunit / 43.29
PMI0031 / hyb0 / hydrogenase 2 small subunit / 39.18
PMI1814 / phsA / thiosulfate reductase precursor / 34.94
PMI0035 / hybD / hydrogenase 2 maturation protease / 34.83
PMI3001 / NA / fimbrial protein / 34.25
PMI1878 / pmfC / outer membrane usher protein / 29.81
PMI0223 / NA / alpha-keto acid decarboxylase / 28.412
PMI1532 / NA / glucose 1-dehydrogenase / 26.85
PMI0032 / hybA / hydrogenase 2 protein / 26.61
PMI2763 / aceA / isocitrate lyase / 24.67
PMI1056 / NA / TRAP-type transport system substrate-binding protein / 0.29
PMI2853 / tag / DNA-3-methyladenine DNA glycosylase I / 0.28
PMI2389 / NA / hypothetical protein / 0.25
PMI0743 / NA / lipoprotein / 0.25
PMI2652 / fixB / electron transfer flavoprotein / 0.25
PMI2421 / NA / phospholipid-binding protein / 0.25
PMI3611 / NA / MFS-family transporter / 0.24
PMI1723 / NA / hypothetical protein / 0.23
PMI0414 / nrdE / ribonucleoside-diphosphate reductase / 0.23
PMI2246 / cysD / sulfate adenylyltransferase subunit 2 / 0.22
PMI2392 / NA / ATP/GTP-binding protein / 0.22
PMI3050 / NA / regulatory ATPase RavA / 0.22
PMI1944 / NA / hypothetical protein / 0.22
PMI1868 / hmp / flavohemoprotein / 0.22
PMI3309 / NA / plasmid-related protein / 0.21
PMI1642 / fliR / flagellar biosynthetic protein / 0.21
PMI0840 / rscR / putative DNA-binding transcriptional regulator / 0.21
PMI2387 / terA / tellurite resistance protein / 0.21
PMI1416 / sufA / scaffold protein for iron-sulfur cluster assembly / 0.21
PMI1209 / disA / tyrosine decarboxylase / 0.20
PMI2544 / groS / 10 Kda chaperonin / 0.20
PMI3406 / rpmA / 50S ribosomal protein L27 / 0.20
PMI0682 / artP / arginine transporter ATP-binding subunit / 0.20
PMI2383 / terE / tellurite resistance protein / 0.20
PMI1540 / NA / transcriptional regulator / 0.20
PMI1536 / NA / regulatory protein / 0.20
PMI3200 / cpxP / periplasmic protein / 0.19
PMI3380 / NA / hypothetical protein / 0.19
PMI3177 / kbl / 2-amino-3-ketobutyrate coenzyme A ligase / 0.19
PMI2388 / terZ / tellurite resistance protein / 0.19
PMI1067 / NA / fimbrial protein / 0.18
PMI2653 / fixA / putative electron transfer flavoprotein / 0.18
PMI1840 / NA / lipoprotein / 0.18
PMI2307 / argA / N-acetylglutamate synthase / 0.18
PMI0681 / artI / arginine ABC transporter / 0.18
PMI2084 / leuA / 2-isopropylmalate synthase / 0.18
PMI2391 / NA / hypothetical protein / 0.18
PMI1619 / fliC2 / flagellin 2 / 0.18
PMI2494 / rimI / ribosomal-protein-alanine N-acetyltransferase / 0.18
PMI0986 / NA / hypothetical protein / 0.17
PMI0599 / modC / molybdate transporter ATP-binding protein / 0.17
PMI2958 / NA / iron ABC transporter / 0.17
PMI0995 / NA / ATP-binding protein / 0.17
PMI2185 / htpG / heat shock protein 90 / 0.16
PMI1835 / cysP / thiosulfate transporter subunit / 0.15
PMI1602 / holE2 / DNA polymerase III / 0.15
PMI0851 / NA / hypothetical protein / 0.15
PMI2121 / NA / phosphosugar-binding regulatory protein / 0.14
PMI2057 / hpmA / hemolysin / 0.14
PMI0174 / NA / hypothetical protein / 0.14
PMI1640 / fliP / flagellar biosynthetic protein / 0.14
PMI3085 / NA / hypothetical protein / 0.13
PMI0671 / sdaB / L-serine dehydratase / 0.13
PMI0030 / exbD / biopolymer transport protein / 0.13
PMI0413 / nrdF / ribonucleoside-diphosphate reductase / 0.13
PMI1414 / sufC / cysteine desulfurase ATPase component / 0.13
PMI1437 / NA / iron utilization protein / 0.13
PMI0672 / sdaC / serine transporter / 0.12
PMI1672 / flhD / transcriptional activator / 0.12
PMI1479 / nirB / nitrite reductase [NAD(P)H] large subunit / 0.12
PMI2129 / NA / hypothetical protein / 0.12
PMI0331 / NA / ABC transporter / 0.11
PMI1415 / sufB / cysteine desulfurase activator complex / 0.11
PMI2056 / hpmB / hemolysin activator protein / 0.11
PMI0834 / NA / hypothetical protein / 0.10
PMI2157 / fruK / 1-phosphofructokinase / 0.10
PMI0029 / exbB / biopolymer transport protein / 0.10
PMI2833 / NA / endoribonuclease / 0.09
PMI1671 / flhC / transcriptional activator / 0.09
PMI2957 / NA / iron ABC transporter / 0.09
PMI1639 / fliO / flagellar protein / 0.08
PMI2380 / NA / methyl-accepting chemotaxis protein / 0.08
PMI2400 / NA / phage lysis protein (holin) / 0.07
PMI1318 / nlpA / lipoprotein-28 / 0.07
PMI3052 / asnA / asparagine synthetase / 0.07
PMI1447 / NA / hypothetical protein / 0.07
PMI0272 / mtrF / efflux pump component / 0.07
PMI3036 / sodA / superoxide dismutase [Mn] / 0.06
PMI3457 / argI / ornithine carbamoyltransferase / 0.05
PMI1945 / ireA / iron-regulated outer membrane virulence protein / 0.05
PMI2497 / NA / hypothetical protein / 0.05
PMI3238 / argB / acetylglutamate kinase / 0.05
PMI3237 / argC / N-acetyl-gamma-glutamyl-phosphate reductase / 0.04
PMI1659 / flhA / flagellar biosynthesis protein / 0.04
PMI0291 / treB / PTS system trehalose-specific transporter / 0.04
PMI1657 / flgN / flagella synthesis protein / 0.04
PMI2898 / NA / amino acid ABC transporter / 0.04
PMI1623 / fliT / flagella protein / 0.04
PMI1245 / NA / hypothetical protein / 0.04
PMI0175 / NA / hypothetical protein / 0.04
PMI2809 / NA / methyl-accepting chemotaxis protein / 0.04
PMI1463 / NA / aminotransferase / 0.04
PMI0875 / ndh / NADH dehydrogenase / 0.04
PMI1663 / cheB / chemotaxis response regulator protein / 0.04
PMI2149 / NA / exported amino acid deaminase / 0.04
PMI0992 / NA / hypothetical protein / 0.04
PMI1359 / NA / outer membrane protein (attachment invasion locus protein) / 0.03
PMI1647 / flgI / flagellar basal body P-ring protein / 0.03
PMI0994 / NA / lipoprotein / 0.03
PMI1660 / flhB / flagellar biosynthesis protein / 0.03
PMI1655 / flgA / flagella basal body P-ring formation protein / 0.03
PMI3460 / NA / lipoprotein / 0.03
PMI0288 / rafY / glycoporin / 0.03
PMI1656 / flgM / anti-sigma28 factor / 0.03
PMI0993 / NA / lipoprotein / 0.03
PMI1646 / flgJ / flagellar rod assembly protein/muramidase / 0.03
PMI0842 / NA / putative outer membrane receptor / 0.03
PMI1662 / cheY / chemotaxis response regulator / 0.03
PMI1617 / fliZ / flagella biosynthesis protein / 0.03
PMI1661 / cheZ / chemotaxis regulator / 0.03
PMI0833 / NA / hypothetical protein / 0.02
PMI1667 / cheW / purine-binding chemotaxis protein / 0.02
PMI1664 / cheR / chemotaxis methyltransferase / 0.02
PMI1633 / fliI / flagellum-specific ATP synthase / 0.02
PMI1622 / fliS / flagellar protein / 0.02
PMI3115 / umoA / upregulator of flagellar operon / 0.02
PMI0290 / NA / glycosyl hydrolase / 0.02
PMI1636 / fliL / flagellar basal body-associated protein / 0.02
PMI0289 / pgmB / beta-phosphoglucomutase / 0.02
PMI1648 / flgH / flagellar basal body L-ring protein / 0.02
PMI1442 / NA / hypothetical protein / 0.02
PMI0182 / NA / transcriptional regulator / 0.02
PMI2834 / aad / amino acid deaminase / 0.02
PMI1668 / cheA / chemotaxis protein / 0.01
PMI1628 / NA / metalloelastase / 0.01
PMI1635 / fliK / flagellar hook-length control protein / 0.01
PMI1665 / NA / methyl-accepting chemotaxis protein / 0.01
PMI1650 / flgF / flagellar basal-body rod protein / 0.01
PMI0176 / NA / hypothetical protein / 0.01
PMI1632 / fliH / flagellar assembly protein H / 0.01
PMI1670 / motA / flagellar motor protein / 0.01
PMI1652 / flgD / basal-body rod modification protein / 0.01
PMI2808 / NA / methyl-accepting chemotaxis protein / 0.01
PMI1634 / fliJ / flagellar biosynthesis chaperone / 0.01
PMI1644 / flgL / flagellar hook-associated protein 3 (hook-filament junction protein) / 0.01
PMI1649 / flgG / flagellar basal-body rod protein (distal rod protein) / 0.01
PMI1638 / fliN / flagellar motor switch protein / 0.01
PMI1669 / motB / motility protein B / 0.01
PMI1631 / fliG / flagellar motor switch protein G / 0.01
PMI1630 / fliF / flagellar MS-ring protein / 0.01
PMI1654 / flgB / flagellar basal body rod protein / 0.01
PMI1651 / flgE / flagellar hook protein / 0.01
PMI1637 / fliM / flagellar motor switch protein / 0.01
PMI1666 / NA / methyl-accepting chemotaxis protein / 0.01
PMI1961 / ccm / membrane protein / 0.00
PMI1629 / fliE / flagellar hook-basal body complex protein / 0.00
PMI1645 / flgK / flagellar hook-associated protein 1 / 0.00
PMI1618 / fliA / flagellar biosynthesis sigma factor / 0.00
PMI1653 / flgC / flagellar basal-body rod protein / 0.00
PMI1621 / fliD / flagellar capping protein / 0.00
PMI1620 / flaA / flagellin 1 / 0.00

1