Table S1. Gene Expression Values (FPKM) of the Transcripts in Control Treatment by RNA Seq

Table S1. Gene expression values (FPKM) of the transcripts in Control treatment by RNA Seq.

Locus tag / Seq. Description / Seq. Length / #GOs / GOs / FPKM
MmSR116_0004 / protein of unassigned function / 507 / 0 / - / 310,585
MmSR116_0006 / 3-hydroxyacyl- dehydrogenase / 2202 / 4 / F:3-hydroxyacyl-CoA dehydrogenase activity; P:oxidation-reduction process; P:fatty acid metabolic process; F:coenzyme binding / 134,955
MmSR116_0024 / protoheme ix farnesyltransferase / 951 / 4 / C:plasma membrane; C:integral to membrane; F:protoheme IX farnesyltransferase activity; P:heme O biosynthetic process / 258,54
MmSR116_0025 / cytochrome c oxidase subunit i / 1629 / 10 / F:cytochrome-c oxidase activity; F:heme binding; C:integral to membrane; P:aerobic respiration; F:electron carrier activity; F:iron ion binding; F:copper ion binding; P:electron transport chain; C:plasma membrane; P:transport / 441,442
MmSR116_0026 / cytochrome c oxidase subunit ii / 840 / 6 / C:integral to membrane; C:respiratory chain; F:cytochrome-c oxidase activity; F:copper ion binding; P:electron transport chain; / 205,365
MmSR116_0029 / glutamate synthase / 4716 / 3 / P:oxidation-reduction process; F:glutamate synthase activity; P:glutamate biosynthetic process / 36,4172
MmSR116_0030 / dihydropyrimidine dehydrogenase subunit a / 1434 / 5 / F:glutamate synthase (NADPH) activity; F:flavin adenine dinucleotide binding; F:iron-sulfur cluster binding; P:glutamate biosynthetic process; P:oxidation-reduction process / 211,236
MmSR116_0031 / cytoplasmic protein / 1434 / 1 / F:hydrolase activity / 91,999
MmSR116_0056 / atp-binding protein / 1029 / 2 / F:helicase activity; P:metabolic process / 175,289
MmSR116_0059 / family transcriptional regulator / 516 / 3 / P:regulation of transcription, DNA-dependent; F:DNA binding; F:zinc ion binding / 306,026
MmSR116_0060 / ---NA--- / 198 / 0 / - / 3372,86
MmSR116_0082 / 50s ribosomal protein l25 / 693 / 4 / C:ribosome; F:structural constituent of ribosome; F:5S rRNA binding; P:translation / 850,473
MmSR116_0085 / protein of unassigned function / 294 / 0 / - / 1037,74
MmSR116_0091 / serine hydroxymethyltransferase / 1305 / 4 / F:glycine hydroxymethyltransferase activity; P:glycine metabolic process; P:L-serine metabolic process; F:pyridoxal phosphate binding / 312,296
MmSR116_0097 / protein of unassigned function / 1302 / 0 / - / 103,1
MmSR116_0098 / family serine protein kinase / 1953 / 1 / F:protein kinase activity / 491,551
MmSR116_0099 / 4-aminobutyrate aminotransferase / 444 / 2 / F:transaminase activity; P:metabolic process / 449,94
MmSR116_0103 / 3-oxoacyl-(acyl-carrier-protein) synthase iii / 1008 / 2 / P:fatty acid biosynthetic process; F:3-oxoacyl-[acyl-carrier-protein] synthase activity / 187,66
MmSR116_0104 / fatty acid phospholipid synthesis protein / 1104 / 4 / P:fatty acid biosynthetic process; F:transferase activity, transferring acyl groups other than amino-acyl groups; P:oxidation-reduction process; F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor / 153,336
MmSR116_0116 / 1-deoxy-d-xylulose-5-phosphate synthase / 1971 / 6 / F:magnesium ion binding; F:1-deoxy-D-xylulose-5-phosphate synthase activity; F:thiamine pyrophosphate binding; P:thiamine biosynthetic process; P:terpenoid biosynthetic process; P:1-deoxy-D-xylulose 5-phosphate biosynthetic process / 519,628
MmSR116_0130 / nad-dependent epimerase dehydratase / 2664 / 3 / F:oxidoreductase activity, acting on CH-OH group of donors; P:oxidation-reduction process; F:flavin adenine dinucleotide binding / 114,461
MmSR116_0131 / glycosyl transferase / 1050 / 1 / P:biosynthetic process / 173,38
MmSR116_0138 / endo- - -beta-glycanase / 885 / 2 / F:hydrolase activity, hydrolyzing O-glycosyl compounds; P:carbohydrate metabolic process / 157,672
MmSR116_0141 / membrane protein / 1638 / 2 / P:metabolic process; F:sulfuric ester hydrolase activity / 103,677
MmSR116_0145 / adenylate guanylate cyclase / 1260 / 3 / P:intracellular signal transduction; F:phosphorus-oxygen lyase activity; P:cyclic nucleotide biosynthetic process / 146,502
MmSR116_0146 / rna polymerase sigma factor / 1980 / 5 / P:regulation of transcription, DNA-dependent; F:DNA binding; F:sequence-specific DNA binding transcription factor activity; F:sigma factor activity; P:DNA-dependent transcription, initiation / 195,048
MmSR116_0151 / carbamoyl phosphate synthase large subunit / 3474 / 4 / P:nitrogen compound metabolic process; F:ATP binding; F:catalytic activity; F:metal ion binding / 44,3308
MmSR116_0153 / protein of unassigned function / 501 / 0 / - / 368,984
MmSR116_0157 / sulfite oxidase subunit / 951 / 2 / F:electron carrier activity; P:oxidation-reduction process / 191,291
MmSR116_0160 / aminopeptidase a / 1512 / 5 / F:metalloexopeptidase activity; F:aminopeptidase activity; F:manganese ion binding; C:cytoplasm; P:proteolysis / 310,502
MmSR116_0163 / organic solvent tolerance protein / 2580 / 3 / P:response to organic substance; C:outer membrane; P:membrane organization / 107,446
MmSR116_0166 / membrane protein / 975 / 0 / - / 693,353
MmSR116_0168 / dna-binding protein / 633 / 1 / F:DNA binding / 368,694
MmSR116_0177 / alpha beta hydrolase / 957 / 2 / P:metabolic process; F:hydrolase activity / 172,394
MmSR116_0180 / methyl-accepting chemotaxis sensory transducer with pas pac sensor / 1461 / 3 / C:membrane; P:phosphorelay signal transduction system; F:phosphorelay sensor kinase activity / 143,304
MmSR116_0184 / formaldehyde-activating enzyme / 513 / 6 / C:cytoplasm; F:carbon-nitrogen lyase activity; P:one-carbon metabolic process; P:response to toxic substance; P:carbohydrate biosynthetic process; P:formaldehyde catabolic process / 337,85
MmSR116_0187 / n -methenyltetrahydromethanopterin cyclohydrolase / 975 / 4 / C:cytoplasm; F:methenyltetrahydromethanopterin cyclohydrolase activity; P:one-carbon metabolic process; P:formaldehyde catabolic process / 417,02
MmSR116_0189 / methylene-tetrahydromethanopterin dehydrogenase / 894 / 5 / C:cytoplasm; F:oxidoreductase activity; P:one-carbon metabolic process; P:formaldehyde catabolic process; P:oxidation-reduction process / 241,524
MmSR116_0191 / tungsten-containing formylmethanofuran dehydrogenase subunit b / 1107 / 1 / P:one-carbon metabolic process / 187,717
MmSR116_0192 / formylmethanofuran dehydrogenase subunit a / 1647 / 6 / C:cytoplasm; F:transferase activity; F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; F:metal ion binding; P:one-carbon metabolic process; P:formaldehyde catabolic process / 193,359
MmSR116_0199 / pyrroloquinoline quinone biosynthesis protein / 900 / 3 / F:hydrolase activity; P:transport; P:pyrroloquinoline quinone biosynthetic process / 503,502
MmSR116_0200 / pyrroloquinoline quinone biosynthesis protein / 1086 / 3 / P:pyrroloquinoline quinone biosynthetic process; P:oxidation-reduction process; F:quinone binding / 153,141
MmSR116_0201 / pyrroloquinoline quinone biosynthesis protein / 1146 / 4 / F:catalytic activity; P:pyrroloquinoline quinone biosynthetic process; F:4 iron, 4 sulfur cluster binding; F:metal ion binding / 143,361
MmSR116_0202 / protein of unassigned function / 723 / 0 / - / 184,256
MmSR116_0207 / abc transporter substrate-binding protein / 849 / 2 / P:transport; F:transporter activity / 391,152
MmSR116_0208 / cytochrome c / 612 / 2 / F:heme binding; F:electron carrier activity / 860,565
MmSR116_0209 / methanol dehydrogenase / 1806 / 5 / F:oxidoreductase activity, acting on CH-OH group of donors; F:calcium ion binding; P:oxidation-reduction process; C:membrane; C:outer membrane-bounded periplasmic space / 1776,7
MmSR116_0219 / malic enzyme / 2331 / 8 / F:malate dehydrogenase (decarboxylating) activity; F:NAD binding; P:oxidation-reduction process; C:cytosol; F:malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity; F:manganese ion binding; P:malate metabolic process; F:transferase activity, transferring acyl groups / 158,371
MmSR116_0222 / polyphosphate kinase / 2403 / 3 / P:polyphosphate biosynthetic process; C:polyphosphate kinase complex; F:polyphosphate kinase activity / 156,111
MmSR116_0236 / glutamyl-trna amidotransferase subunit b / 1473 / 1 / F:carbon-nitrogen ligase activity, with glutamine as amido-N-donor / 266,398
MmSR116_0241 / cell wall assembly protein / 591 / 0 / - / 453,747
MmSR116_0245 / multifunctional complex type / 1305 / 3 / F:dihydroorotase activity; F:metal ion binding; P:pyrimidine nucleotide biosynthetic process / 121,803
MmSR116_0252 / 5 -methylthioadenosine phosphorylase / 876 / 3 / P:nucleoside metabolic process; F:phosphorylase activity; F:S-methyl-5-thioadenosine phosphorylase activity / 232,145
MmSR116_0253 / cytochrome c1 / 897 / 6 / F:iron ion binding; F:ubiquinol-cytochrome-c reductase activity; F:electron carrier activity; F:heme binding; P:oxidation-reduction process; / 425,514
MmSR116_0254 / cytochrome b / 1287 / 4 / F:oxidoreductase activity; F:electron carrier activity; C:membrane; P:respiratory electron transport chain / 379,906
MmSR116_0261 / succinate hydrophobic membrane anchor protein / 420 / 4 / F:succinate dehydrogenase activity; P:tricarboxylic acid cycle; C:integral to membrane; F:heme binding / 475,388
MmSR116_0268 / gmp synthase / 1557 / 4 / P:GMP biosynthetic process; F:ATP binding; F:GMP synthase (glutamine-hydrolyzing) activity; F:pyrophosphatase activity / 151,556
MmSR116_0282 / dna repair atpase / 2082 / 0 / - / 71,1938
MmSR116_0291 / Hypothetical protein / 1572 / 0 / - / 70,2084
MmSR116_0316 / cytochrome c / 864 / 3 / C:cytochrome complex; F:electron carrier activity; F:heme binding / 267,797
MmSR116_0318 / sulfur oxidation protein / 471 / 0 / - / 277,859
MmSR116_0336 / transcriptional initiation protein tat / 771 / 0 / - / 148,066
MmSR116_0349 / protein of unassigned function / 1722 / 0 / - / 175,285
MmSR116_0366 / metallophosphoesterase / 579 / 1 / F:hydrolase activity / 291,82
MmSR116_0367 / integrase family protein / 1662 / 3 / P:DNA recombination; P:DNA integration; F:DNA binding / 255,201
MmSR116_0371 / cation transporter / 1551 / 2 / P:transmembrane transport; C:membrane / 167,794
MmSR116_0394 / atpase / 1875 / 4 / P:phosphorylation; F:phosphorelay sensor kinase activity; P:signal transduction; C:membrane / 100,699
MmSR116_0414 / short-chain dehydrogenase / 768 / 2 / F:3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity; P:oxidation-reduction process / 252,054
MmSR116_0419 / metal-chelation protein chad / 1515 / 0 / - / 121,551
MmSR116_0423 / gdsl family lipase / 804 / 2 / F:hydrolase activity; P:metabolic process / 276,692
MmSR116_0431 / histidine kinase / 1809 / 4 / P:phosphorylation; F:phosphorelay sensor kinase activity; P:signal transduction; C:integral to membrane / 99,6872
MmSR116_0433 / pyridoxamine 5 -phosphate oxidase / 780 / 3 / P:oxidation-reduction process; F:FMN binding; F:oxidoreductase activity / 178,108
MmSR116_0440 / molybdenum cofactor biosynthesis protein / 1230 / 1 / P:Mo-molybdopterin cofactor biosynthetic process / 171,653
MmSR116_0442 / indole-3-glycerol-phosphate synthase / 918 / 2 / F:indole-3-glycerol-phosphate synthase activity; P:tryptophan metabolic process / 205,289
MmSR116_0446 / #NAME? / 1980 / 1 / F:isomerase activity / 59,9646
MmSR116_0450 / ctp synthetase / 1629 / 4 / F:CTP synthase activity; F:ATP binding; P:glutamine metabolic process; P:'de novo' CTP biosynthetic process / 93,1682
MmSR116_0457 / cobaltochelatase subunit / 3384 / 1 / P:biosynthetic process / 59,5735
MmSR116_0459 / precorrin-8x methylmutase / 693 / 2 / F:precorrin-8X methylmutase activity; P:cobalamin biosynthetic process / 295,793
MmSR116_0471 / abc transporter / 822 / 2 / F:ATPase activity; F:ATP binding / 265,904
MmSR116_0485 / upf0133 protein / 324 / 3 / C:cytoplasm; C:bacterial nucleoid; F:DNA binding / 1001,89
MmSR116_0486 / phosphoenolpyruvate carboxykinase / 1620 / 3 / P:gluconeogenesis; F:ATP binding; F:phosphoenolpyruvate carboxykinase (ATP) activity / 298,109
MmSR116_0490 / trna pseudouridine synthase a / 759 / 3 / F:RNA binding; F:pseudouridine synthase activity; P:pseudouridine synthesis / 272,634
MmSR116_0491 / membrane protein / 1380 / 0 / - / 123,061
MmSR116_0493 / amylo-alpha- -glucosidase / 2346 / 6 / C:integral to membrane; F:glucosylceramidase activity; P:sphingolipid metabolic process; P:glycogen catabolic process; F:amylo-alpha-1,6-glucosidase activity; F:4-alpha-glucanotransferase activity / 74,4856
MmSR116_0494 / glycosyl transferase / 1131 / 1 / P:biosynthetic process / 1070,81
MmSR116_0498 / phenylalanyl-trna synthetase subunit beta / 2421 / 7 / F:ATP binding; F:magnesium ion binding; P:phenylalanyl-tRNA aminoacylation; F:phenylalanine-tRNA ligase activity; F:tRNA binding; P:tRNA processing; C:cytoplasm / 216,765
MmSR116_0501 / translation initiation factor if-3 / 522 / 2 / P:translational initiation; F:translation initiation factor activity / 288,892
MmSR116_0504 / alpha beta hydrolase / 768 / 2 / F:hydrolase activity; P:metabolic process / 255,655
MmSR116_0508 / tat pathway signal protein / 474 / 0 / - / 368,095
MmSR116_0510 / biopolymer transporter / 492 / 3 / C:integral to membrane; F:transporter activity; P:protein transport / 341,665
MmSR116_0524 / acyltransferase 3 / 1071 / 1 / F:transferase activity, transferring acyl groups other than amino-acyl groups / 237,649
MmSR116_0528 / thiamine biosynthesis protein / 1887 / 2 / P:thiamine biosynthetic process; F:iron-sulfur cluster binding / 235,086
MmSR116_0530 / glutamine amidotransferase / 825 / 4 / F:transferase activity; F:hydrolase activity; F:ligase activity; P:glutamine metabolic process / 1157,48
MmSR116_0531 / asparagine synthase / 1770 / 2 / P:asparagine biosynthetic process; F:asparagine synthase (glutamine-hydrolyzing) activity / 96,3162
MmSR116_0538 / radical sam protein / 1047 / 4 / F:catalytic activity; F:metal ion binding; F:4 iron, 4 sulfur cluster binding; P:metabolic process / 269,066
MmSR116_0542 / polyphosphate kinase / 846 / 2 / F:polyphosphate kinase activity; P:phosphorus metabolic process / 505,531
MmSR116_0545 / poly(3-hydroxybutyrate) depolymerase / 2358 / 0 / - / 66,756
MmSR116_0556 / family transcriptional regulator / 900 / 2 / P:regulation of transcription, DNA-dependent; F:sequence-specific DNA binding transcription factor activity / 268,548
MmSR116_0557 / citrate transporter / 1323 / 4 / P:transmembrane transport; C:integral to membrane; F:citrate transmembrane transporter activity; P:citrate transport / 186,467
MmSR116_0565 / coenzyme a transferase / 1983 / 2 / F:3-oxoacid CoA-transferase activity; P:metabolic process / 178,198
MmSR116_0572 / membrane protein / 612 / 0 / - / 343,289
MmSR116_0574 / murein transglycosylase / 795 / 2 / F:transferase activity, transferring glycosyl groups; P:metabolic process / 858,907
MmSR116_0584 / atpase aaa / 1941 / 3 / P:proteolysis; F:metalloendopeptidase activity; F:ATP binding / 93,8581
MmSR116_0586 / Hypothetical protein / 1029 / 0 / - / 177,346
MmSR116_0598 / cation transporter / 1344 / 2 / P:transmembrane transport; C:membrane / 189,59
MmSR116_0599 / cation transporter / 3249 / 3 / P:cation transport; F:cation transmembrane transporter activity; C:integral to membrane / 49,8084
MmSR116_0637 / arsenic transporter / 1068 / 5 / C:integral to membrane; F:inorganic anion transmembrane transporter activity; P:transmembrane transport; P:sodium ion transport; F:bile acid:sodium symporter activity / 220,25
MmSR116_0672 / integral membrane sensor signal transduction histidine kinase / 1317 / 5 / C:integral to membrane; F:phosphorelay sensor kinase activity; F:ATP binding; P:phosphorelay signal transduction system; P:signal transduction by phosphorylation / 134,501
MmSR116_0683 / piwi domain-containing protein / 2304 / 2 / F:protein binding; F:nucleic acid binding / 64,1243
MmSR116_0688 / dna gyrase subunit b / 2445 / 5 / F:ATP binding; P:DNA topological change; F:DNA binding; F:DNA topoisomerase type II (ATP-hydrolyzing) activity; C:chromosome / 407,807
MmSR116_0689 / aldo keto reductase / 963 / 2 / P:oxidation-reduction process; F:oxidoreductase activity / 184,636
MmSR116_0696 / protein of unassigned function / 636 / 0 / - / 1227,12
MmSR116_0697 / polysaccharide export protein / 588 / 3 / F:polysaccharide transmembrane transporter activity; P:polysaccharide transport; C:membrane / 275,648
MmSR116_0698 / lipopolysaccharide biosynthesis protein / 2235 / 2 / P:lipopolysaccharide biosynthetic process; C:membrane / 153,135
MmSR116_0709 / protein of unassigned function / 639 / 0 / - / 226,401
MmSR116_0710 / multidrug abc transporter permease / 858 / 4 / C:membrane; F:ATPase activity, coupled to transmembrane movement of substances; P:transport; F:ATP binding / 265,624