Table 7 in electronic supplemental material
Linkage groups contributing genetically to male variable quantitative traits segregating in Cross157
The QTL mapping results from the non-parametric Kruskal Wallis (KW) analysis and Multiple QTL model (MQM) for each trait are summarized. The linkage groups contributing significant loci influencing each trait are listed in the order of their significance. For Kruskal Wallis analysis, a threshold of K* value = 10, significance p = 0.005 was used. For MQM mapping, the threshold for each trait was estimated based on permutation test for respective linkage groups. LG 12 (sex chromosome) is shown in bold.
Trait / Linkage group (KW) / Linkage group (MQM)Snout to hind fin (L1) / 12,7,2,9,15 / 12,9,2,7,18,13,15,21,4
Snout to dorsal fin (L2) / 2,7,12,15,9 / 12,2,7,9,18,21,4,13
Posterior caudal peduncle height (L3) / 12,2,4,15,8,7,11,5 / 12,2,4,11,9,5,18,10,22,7
Anterior caudal peduncle height (L4) / 12,9,7,8,4, / 12,9,2,7,18,4,22,5,15,10,1
Gonopodium to dorsal fin (L5) / 12,9,22,15, / 12,22,9,2,18,17,15,21
Caudal peduncle area / 12,9,7,2,14,15,10,22,11,8 / 12,9,7,2,18,21,18,15,22,1
L1 : L2 / 11,9 / 4,11,9,8,2,18,13,19,15,6
L1: L5 / 12 / 12,22,1,9,20,17
L2 : L5 / 12,9 / 12,9,22,1
L4 : L3 / 11,12,9,6 / 11,12,6,9,7,8
CParea : L4 / 12,9,7 / 12,9,7,8,22,2,23,17
CParea: L3 / 12,9,11,7 / 12,9,11,7,21,4,13,15
CParea : L4/L3 / 12,9,7 / 12,9,2,7,18,22
L1 : CParea / 12,9,7,22 / 12,9,22,3,5,7,8,17
L2/L5 : CParea / 12,9,22,7 / 12,9,22,7,5,18,3,22,1
L1/ L4:L3 / 12,2,11,23,15,14 / 12,2,11,4,8,18,23,9,13
Dorsal fin black (Area) / 1,12,4,2,7,9,2 / 12,1,4,2,9,8,18
Dorsal fin orange (Area) / 1,6,12,2,4,7,23 / 1,6,4,16,2,7,23,20
Central blue white spot (Area) / 12,2,17,11,4,23,19 / 12,2,23,17,21,19
Anterior main black stripe (Area) / 8,4,6 / 8,19
Anterior orange spot (Area) / 7,20,6,9,23,12 / 12,7,6,20,9,23,19,8,5,3
Black spot by gonopodium (Area) / 12,16,1,3,7,4 / 12,4,16,7,1,23,3
Central orange spot (Area) / 8,5,20,6 / 8,5,20,22,3
Posterior main black stripe (Area) / 13,1,15,22,23,6,17,12 / 23,10,12,15,1
Posterior ventral black stripe (Area) / 13,1,2,6,16,12 / 13,2,16,1,18,15,6
Posterior orange spot (Area) / 18,16,9,4,15,19,13,8 / 9,16,18,15,8,4,19
Hind fin lower orange (Area) / 20,4,12,6,2,8,22,3 / 20,4,12,6,3,2,8,19
Hind fin caudal black spot (Area) / 4,12,21,2 / 4,12,2,21,15,6,16,8,1