Table 2: Percentage homology value of nucleotides and amino acids of RNA1 of CMV-SG with different isolates of CMV reported worldwide

S.No. / Accession No. / Country / Host / Strain/ Isolate / Sub-group / RNA1 / 1a
nt aa / 5’UTR / 3’UTR
1 / AF198101 / Australia / - / Ly / II / 98.6 / 98.9 / 98.9 / 86.3 / 99.3
2 / X02733 / Australia / - / Q / II / 98.2 / 98.7 / 98.7 / 83.5 / 97.7
3 / EF202595 / China / Tomato / Tsh / II / 97.2 / 97.5 / 97.5 / 86.3 / 98.1
4 / EU723568 / China / Pinellia ternata / PHz / I / 74.4 / 77.4 / 77.4 / 66.6 / 49.8
5 / EU665000 / China / Tagetes erecta / Tag / II / 97.3 / 97.5 / 97.5 / 84.2 / 98.7
6 / AY429435 / China / Arachis hypogaea / CS / I / 75.3 / 77.6 / 77.6 / 62.6 / 57.0
7 / EF213023 / China / Brassica chinensis / CTL / IB / 75.2 / 77.5 / 77.5 / 64.6 / 58.4
8 / DQ402477 / China / - / Phy / I / 75.5 / 77.8 / 77.8 / 65.6 / 57.8
9 / DQ399548 / China / Pinellia ternata / BX / I / 74.3 / 77.0 / 77.0 / 65.9 / 52.3
10 / EF216866 / China / Tomato / Cb7 / IB / 75.4 / 77.7 / 77.7 / 65.6 / 57.8
11 / AJ007933 / Hungary / - / Trk7 / II / 98.4 / 98.8 / 98.8 / 87.3 / 98.4
12 / AJ580953 / Hungary / Nicotiana glutinosa / Ns / I / 75.2 / 77.9 / 77.9 / 68.6 / 54.7
13 / GU111227 / India / Tomato / ND / I / 74.6 / 76.7 / 76.7 / 65.6 / 57.9
14 / AJ879490 / India / Lilium longiflorum / Lily / I / 71.3 / 77.5 / 77.5 / 66.0 / 37.8
15 / Y16924 / Italy / Tomato / Tfn / I / 75.4 / 77.9 / 77.9 / 65.6 / 56.6
16 / AB176849 / Japan / Tomato / TN / II / 98.6 / 99.2 / 99.2 / 85.2 / 96.2
17 / AB124834 / Japan / Pepo / I / 75.3 / 77.7 / 77.7 / 68.0 / 55.7
18 / AB368499 / Japan / Tomato / PF / I / 75.0 / 77.5 / 77.5 / 69.0 / 56.1
19 / D12537 / Japan / - / Y / IA / 74.8 / 77.0 / 77.0 / 68.0 / 56.0
20 / JN054636 / Malaysia / Cucumber / CLW2 / I / 74.9 / 77.3 / 77.3 / 64.0 / 55.1
21 / AJ304405 / Netherland / Alsteromeria / IPO / II / 98.3 / 98.6 / 98.6 / 86.3 / 98.7
22 / AJ304404 / Netherland / Alstromeria / NAK / II / 98.1 / 98.6 / 98.6 / 86.3 / 96.8
23 / AJ304393 / Netherland / Alstromeria / LBO / II / 96.8 / 96.5 / 96.5 / 86.3 / 96.8
24 / Y10884 / South Africa / Squash / S / II / 95.1 / 98.8 / 98.8 / 34.9 / 74.0
25 / AB506795 / South Korea / lily / Li / I / 75.6 / 77.6 / 77.6 / 66.6 / 60.6
26 / AJ535913 / South Korea / Lily longiflorum / Ly2 / I / 75.1 / 77.2 / 77.2 / 65.0 / 60.6
27 / AJ276479 / South Korea / - / Mf / IA / 74.7 / 77.1 / 77.1 / 67.6 / 56.4
28 / D28778 / Taiwan / - / NT9 / I / 75.5 / 77.9 / 77.9 / 65.6 / 57.3
29 / AF416899 / USA / Lactuca saligna / LS / II / 98.7 / 99.0 / 99.0 / 87.3 / 99.0
30 / D00356 / USA / - / Fny / IA / 75.1 / 77.4 / 77.4 / 66.6 / 55.1
31 / U20220 / USA / Tomato / Ixora / I / 75.2 / 77.5 / 77.5 / 66.6 / 56.8