Table 2.1 Isolates and GenBank accessions for the gene sequences in this study.Bold accession numbers were generated in other studies

New species name / Former species name / Culture number / GenBank accessions
SSU / LSU / ITS / RPB2 / TEF / GAPDH
Alternaria
limoniasperae / Alternaria
limoniasperae / CBS 102595 / KC584540 / KC584284 / FJ266476 / KC584408 / AY562411 / KC584666
Alternaria
alternantherae / Alternaria
alternantherae / CBS 124392 / KC584506 / KC584251 / KC584179 / KC584374 / KC584633 / KC584096
Alternaria
perpunctulata / Alternaria
perpunctulata / CBS 115267 / KC584550 / KC584294 / KC584210 / KC584418 / KC584676 / KC584129
Alternaria
pseudorostrata / Alternaria
pseudorostrata / CBS 119411 / KC584554 / KC584298 / JN383483 / KC584422 / KC584680 / AY562406
Alternaria
triglochinicola / Alternaria
triglochinicola / CBS 119676 / KC584569 / KC584313 / KC584222 / KC584437 / KC584695 / KC584145
Alternaria
chlamydosporigena / Embellisia
chlamydospora / CBS 341.71 / KC584584 / KC584326 / KC584231 / KC584451 / KC584710 / KC584156
Alternaria
chlamydospora / Alternaria
chlamydospora / CBS 491.72 / KC584520 / KC584264 / KC584189 / KC584388 / KC584647 / KC584108
Alternaria abundans / Embellisia abundans / CBS 534.83 / KC584581 / KC584323 / JN383485 / KC584448 / KC584707 / KC584154
Alternaria alternata / Alternaria alternata / CBS 916.96 / KC584507 / DQ678082 / AF347031 / KC584375 / KC584634 / AY278808
Alternaria alternata / Alternaria alternata / MFLUCC 14-1184 / KP334721 / KP334701 / KP334711 / KP334731 / KP334733 / KP334735
Alternaria alternata / Alternaria alternata / MFLUCC14-1185 / KP334722 / KP334702 / KP334712 / KP334732 / KP334734 / KP334736
Alternaria alternata / Alternaria alternata / MFLUCC (IT 466) / KP334723 / KP334703 / KP334713
Alternaria anigozanthi / Alternaria anigozanthi / CBS 121920 / KC584508 / KC584252 / KC584180 / KC584376 / KC584635 / KC584097
Alternaria arborescens / Alternaria arborescens / CBS 102605 / KC584509 / KC584253 / AF347033 / KC584377 / KC584636 / AY278810
Alternaria arbusti / EGS 91-136 / JQ693644
Alternaria armoraciae / Alternaria armoraciae / CBS 118702 / KC584511 / KC584255 / KC584182 / KC584379 / KC584638 / KC584099
Alternaria aspera / Ulocladium
arborescens / CBS 115269 / KC584607 / KC584349 / KC584242 / KC584474 / KC584734 / KC584166
Alternaria bornmuelleri / Undifilum bornmuelleri / DAOM 231361 / KC584624 / KC584366 / FJ357317 / KC584491 / KC584751 / FJ357305
Alternaria botryospora / Embellisia novaezelandiae / CBS 478.90 / KC584594 / KC584336 / AY278844 / KC584461 / KC584720 / AY278831
Alternaria botrytis / Ulocladium botrytis / CBS 197.67 / KC584609 / KC584351 / KC584476 / KC584243 / KC584168 / KC584736
Alternaria brassicicola / Alternaria brassicicola / CBS 118699 / KC584515 / KC584259 / JX499031 / KC584383 / KC584642 / KC584103
Alternaria breviramosa / Chalastospora
ellipsoidea / CBS 121331 / KC584574 / KC584318 / FJ839608 / KC584442 / KC584700 / KC584148
Alternaria caespitosa Infectoriae / Ybotryomyces
caespitosus / CBS 177.80 / KC584625 / KC584367 / KC584250 / KC584492 / KC584752 / KC584178
Alternaria californica / EGS 52-082 / JQ693645 / JQ672433
Alternaria capsici-annui / Alternaria capsici-annui / CBS 504.74 / KC584517 / KC584261 / KC584187 / KC584385 / KC584644 / KC584105
Alternaria caricis / Nimbya caricis / CBS 480.90 / KC584600 / KC584342 / AY278839 / KC584467 / KC584726 / AY278826
Alternaria carotiincultae / Alternaria carotiincultae / CBS 109381 / KC584518 / KC584262 / KC584188 / KC584386 / KC584645 / KC584106
Alternaria cetera Chalastospora / Chalastospora cetera / CBS 121340 / KC584573 / KC584317 / JN383482 / KC584441 / KC584699 / AY562398
Alternaria cheiranthi / Alternaria cheiranthi / CBS 109384 / KC584519 / KC584263 / AF229457 / KC584387 / KC584646 / KC584107
Alternaria cinerariae / Alternaria cinerariae / CBS 116495 / KC584521 / KC584265 / KC584190 / KC584389 / KC584648 / KC584109
Alternaria conjuncta / Alternaria conjuncta / CBS 196.86 / KC584522 / KC584266 / FJ266475 / KC584390 / KC584649 / AY562401
Alternaria cucurbitae / Ulocladium cucurbitae / CBS 483.81 / KC584616 / KC584358 / FJ266483 / KC584483 / KC584743 / AY562418
Alternaria dauci / Alternaria dauci / CBS 117097 / KC584524 / KC584268 / KC584192 / KC584392 / KC584651 / KC584111
Alternaria daucicaulis / EGS 36-1947 / JQ693653 / JQ672435
Alternaria daucifolii / Alternaria daucifolii / CBS 118812 / KC584525 / KC584269 / KC584193 / KC584393 / KC584652 / KC584112
Alternaria dianthicola / Alternaria dianthicola / CBS 116491 / KC584526 / KC584270 / KC584194 / KC584394 / KC584653 / KC584113
Alternaria dianthicola / CBS 915.96 / JQ693640 / JQ672429
Alternaria embellisia / Embellisia allii / CBS 339.71 / KC584582 / KC584324 / KC584230 / KC584449 / KC584708 / KC584155
Alternaria ethzedia / Alternaria ethzedia / CBS 197.86 / KC584530 / KC584274 / AF392987 / KC584398 / KC584657 / AY278795
Alternaria eureka / Embellisia eureka / CBS 193.86 / KC584589 / KC584331 / JN383490 / KC584456 / KC584715 / JN383471
Alternaria frumenti / EGS 44-001 / JQ693654 / JQ672416
Alternaria gaisen / Alternaria gaisen / CBS 632.93 / KC584531 / KC584275 / KC584197 / KC584399 / KC584658 / KC584116
Alternaria gypsophilae / Alternaria gypsophilae / CBS 107.41 / KC584533 / KC584277 / KC584199 / KC584401 / KC584660 / KC584118
Alternaria hordeiaustralica / EGS 44-200 / JQ693641 / JQ672432
Alternaria hordeicola / EGS 50-184 / JQ693642 / JQ672425
Alternaria humuli / EGS 47 140 / JQ693652 / JQ672434 / JQ646293
Alternaria hyacinthi / Embellisia hyacinthi / CBS 416.71 / KC584590 / KC584332 / KC584233 / KC584457 / KC584716 / KC584158
Alternaria incomplexa / EGS 17-103 / JQ672422 / JQ693658
Alternaria infectoria / Alternaria infectoria / CBS 210.86 / KC584536 / KC584280 / DQ323697 / KC584404 / KC584662 / AY278793
Alternaria intercepta / EGS 49-137 / JQ693656 / JQ672431
Alternaria japonica / Alternaria japonica / CBS 118390 / KC584537 / KC584281 / KC584201 / KC584405 / KC584663 / KC584121
Alternaria juxtiseptata / Alternaria juxtiseptata / CBS 119673 / KC584538 / KC584282 / KC584202 / KC584406 / KC584664 / KC584122
Alternaria leptinellae / Embellisia leptinellae / CBS 477.90 / KC584592 / KC584334 / KC584235 / KC584459 / KC584718 / KC584160
Alternaria leucanthemi / Teretispora
leucanthemi / CBS 422.65 / KC584606 / KC584348 / KC584241 / KC584473 / KC584733 / KC584165
Alternaria leucanthemi / Teretispora
leucanthemi / CBS 421.65 / KC584605 / KC584347 / KC584240 / KC584472 / KC584732 / KC584164
Alternaria limaciformis / Alternaria limaciformis / CBS 481.81 / KC584539 / KC584283 / KC584203 / KC584407 / KC584665 / KC584123
Alternaria longipes / Alternaria longipes / CBS 540.94 / KC584541 / KC584285 / AY278835 / KC584409 / KC584667 / AY278811
Alternaria macrospora / Alternaria macrospora / CBS 117228 / KC584542 / KC584286 / KC584204 / KC584410 / KC584668 / KC584124
Alternaria merytae / EGS 46 153 / JQ693651 / JQ672421 / JQ646292
Alternaria metachromatica / EGS 38-132 / KF496083 / JQ646498 / FJ214931 / AY762956
Alternaria molesta / Alternaria molesta / CBS 548.81 / KC584544 / KC584288 / KC584205 / KC584412 / KC584670 / KC584125
Alternaria mouchaccae / Alternaria mouchaccae / CBS 119671 / KC584545 / KC584289 / KC584206 / KC584413 / KC584671 / AY562399
Alternaria murispora / KP334724 / KP334704 / KP334714
Alternaria nepalensis / Alternaria nepalensis / CBS 118700 / KC584546 / KC584290 / KC584207 / KC584414 / KC584672 / KC584126
Alternaria nobilis / Alternaria nobilis / CBS 116490 / KC584547 / KC584291 / KC584208 / KC584415 / KC584673 / KC584127
Alternaria novae zelandiae / EGS 48 092 / JQ693655 / JQ672418 / JQ646296
Alternaria obovoidea / Ulocladium
obovoideum / CBS 101229 / KC584618 / KC584360 / FJ266487 / KC584485 / KC584745 / FJ266498
Alternaria oregonensis / Alternaria oregonensis / CBS 542.94 / KC584548 / KC584292 / FJ266478 / KC584416 / KC584674 / FJ266491
Alternaria oudemansii / Ulocladium oudemansii / CBS 114.07 / KC584619 / KC584361 / FJ266488 / KC584486 / KC584746 / KC584175
Alternaria panax / Alternaria panax / CBS 482.81 / KC584549 / KC584293 / KC584209 / KC584417 / KC584675 / KC584128
Alternaria papavericola / Brachycladium papaveris / CBS 116606 / KC584579 / KC584321 / FJ357310 / KC584446 / KC584705 / FJ357298
Alternaria peglionii / CBS 103.26 / JQ693646
Alternaria penicillata / Crivellia papaveracea / CBS 116607 / KC584580 / KC584322 / KC584229 / KC584447 / KC584706 / KC584153
Alternaria photistica / EGS 35-172 / JQ693659 / JQ672417
Alternaria photistica / Alternaria photistica / CBS 212.86 / KC584552 / KC584296 / KC584212 / KC584420 / KC584678 / KC584131
Alternaria planifunda / Embellisia planifunda / CBS 537.83 / KC584596 / KC584338 / FJ357315 / KC584463 / KC584722 / FJ357303
Alternaria porri / Alternaria porri / CBS 116698 / KC584553 / KC584297 / DQ323700 / KC584421 / KC584679 / KC584132
Alternaria poteae / Embellisia proteae / CBS 475.90 / KC584597 / KC584339 / AY278842 / KC584464 / KC584723 / KC584161
Alternaria radicina / Alternaria radicina / CBS 245.67 / KC584555 / KC584299 / KC584213 / KC584423 / KC584681 / KC584133
Alternaria rosae / EGS 41-130 / JQ693639 / JQ672414
Alternaria saponariae / Alternaria saponariae / CBS 116492 / KC584557 / KC584301 / KC584215 / KC584425 / KC584683 / KC584135
Alternaria scirpicola / Nimbya scirpicola / CBS 481.90 / KC584602 / KC584344 / KC584237 / KC584469 / KC584728 / KC584163
Alternaria septospora / Ulocladium
septosporum / CBS 109.38 / KC584620 / KC584362 / FJ266489 / KC584487 / KC584747 / FJ266500
Alternaria simsimi / Alternaria simsimi / CBS 115265 / KC584560 / KC584304 / JF780937 / KC584428 / KC584686 / KC584137
Alternaria slovaca / Chmelia slovaca / CBS 567.66 / KC584576 / KC584319 / KC584226 / KC584444 / KC584702 / KC584150
Alternaria solani / Alternaria solani / CBS 116651 / KC584562 / KC584306 / KC584217 / KC584430 / KC584688 / KC584139
Alternaria sonchi / Alternaria sonchi / CBS 119675 / KC584565 / KC584309 / KC584220 / KC584433 / KC584691 / KC584142
Alternaria sp. / Clathrospora
heterospora / CBS 175.52 / KC584577 / KC584320 / KC584227 / KC584445 / KC584703 / KC584151
Alternaria sp. / Comoclathris magna / CBS 174.52 / KC584578 / DQ678068 / KC584228 / DQ677964 / KC584704 / KC584152
Alternaria sp. / Nimbya gomphrenae / CBS 108.27 / KC584601 / KC584343 / KC584236 / KC584468 / KC584727 / KC584162
Alternaria sp. / “Alternaria resedae” / CBS 115.44 / KC584556 / KC584300 / KC584214 / KC584424 / KC584682 / KC584134
Alternaria sp. / EGS 10-193 / JQ693648
Alternaria tagetica / Alternaria tagetica / CBS 479.81 / KC584566 / KC584310 / KC584221 / KC584434 / KC584692 / KC584143
Alternaria tellustris / Embellisia tellustris / CBS 538.83 / KC584598 / KC584340 / FJ357316 / KC584465 / KC584724 / AY562419
Alternaria tenuissima / Alternaria tenuissima / CBS 918.96 / KC584567 / KC584311 / AF347032 / KC584435 / KC584693 / AY278809
Alternaria terricola / Ulocladium
tuberculatum / CBS 202.67 / KC584623 / KC584365 / FJ266490 / KC584490 / KC584750 / KC584177
Alternaria triticimaculans / EGS 41-050 / JQ693657 / JQ672430
Alternaria triticina / EGS 17-061 / AY762948 / AY762958
Alternaria vaccariicola / Alternaria vaccariicola / CBS 118714 / KC584571 / KC584315 / KC584224 / KC584439 / KC584697 / KC584147
Alternaria ventricosa / EGS 52-075 / JQ693649 / JQ672426
Alternaria viburni / EGS 49-147 / JQ693647 / JQ672420
Alternariaster helianthi / CBS 134020 / KC609346 / KC609340 / KC609352
Alternariaster helianthi / CBS 327.69 / KC584627 / KC584369 / KC609335 / KC584494
Bipolaris cynodontis / Cochliobolus cynodontis / ICMP 6128 / JX256380 / JX256412 / JX276427
Bipolaris heterostrophus / Cochliobolus heterostrophus / CBS 134.39 / AY544727 / AY544645 / DQ247790
Bipolaris melinidis / Cochliobolus melinidis / BRIP 12898 / JN600994 / JX256411 / JN192382 / JN600972
Bipolaris miyabeanus / Cochliobolus miyabeanus / MFLUCC 10 0694 / JX256381 / JX256413 / JX266582 / JX276428
Camarosporium aloes / CPC 21572 / KF777198 / KF777142
Camarosporium quaternatum / CBS 483.95 / GU296141 / GU301806 / GU357761
Chalastospora gossypii / CPC 15567 / FJ839650 / FJ839615
Chalastospora obclavata / CBS 124120 / FJ839651 / FJ839616
Clathrospora elynae / CBS 196.54 / KC584629 / KC584371 / KC584496
Clathrospora elynae / CBS 161.51 / KC584628 / KC584370 / KC584495
Comoclathris compressa / CBS 156.53 / KC584630 / KC584372 / KC584497
Comoclathris compressa / CBS 157.53 / KC584631 / KC584373 / KC584498
Comoclathris sedi / MFLUCC 13 0754 / KP334725 / KP334705 / KP334715
Comoclathris sedi / Pleospora ambigua / CBS 366.52 / AY787937
Comoclathris sedi / MFLUCC 13 0817 / KP334727 / KP334706 / KP334716
Comoclathris sedi / MFLUCC 13 0763 / KP334728 / KP334707 / KP334717
Comoclathris sedi / MFLUCC 13 0607 / KP334726 / KP334708 / KP334718
Comoclathris sp. / Pleospora incompta / CBS 467.76 / GU238220 / GU238087 / KC584504
Comoclathris sp. / Pleospora typhicola / CBS 132.69 / JF740105 / JF740325 / KC584505
Comoclathris spartii / MFLUCC 13 0214 / KM577161 / KM577160 / KM577159
Coniothyrium palmarum / CBS 400.71 / EU754054 / EU754153 / AY720708
Coniothyrium palmarum / CBS 758.73 / EU754055 / EU754154
Cucurbitaria berberidis / CBS 394.84 / GQ387544 / GQ387605
Cucurbitaria berberidis / CBS 363.93 / GQ387545 / GQ387606
Curvularia heteropogonis / CBS 284.91 / JN600990 / JN192379
Curvularia lunata / CBS 730.96 / JX256396 / JX256429
Curvularia ravenelii / BRIP 13165 / JN601001 / JN192386
Decorospora gaudefroyi / pp4723 / AF394542 / EF177849 / AF394541
Decorospora sp / Pleospora sp. / ATCC MYA-3202 / FJ914896 / FJ914869
Decorospora sp. / Pleospora sp. / ATCC MYA-3203 / FJ914897 / FJ914870
Dendryphiella salina / CBS:142.60 / KC793337 / KC793339 / KC793340
Dothidotthia aspera / CPC 12933 / EU673228 / EU673276
Dothidotthia symphoricarpi / CPC 12929 / EU673224 / EU673273
Drechslera dematioidea / CBS 108963 / JN712532 / JN712466
Drechslera dematioidea / CBS 108963 / JN712532 / JN712466 / JN712590 / AY004820
Drechslera dictyoides / DAOM 63666 / JN940080 / JN943653 / AY004836
Drechslera dictyoides / DAOM 63666 / JN940080 / JN943653 / AY004836
Edenia gomezpompae / CBS 124106 / FJ839654 / FJ839619
Edenia gomezpompae / C1c / EF565744
Edenia gomezpompae / JLCC34533 / KC193601
Edenia gomezpompae / 11G048 / KJ957792
Embellisia annulata / CBS 302.84 / KC584583 / KC584325 / JN383486 / KC584450 / JN383467
Exserohilum sp. / C950801 / AB245146 / AB245145
Exserohilum sp. / NK93 / AB245148 / AB245147
Gibbago trianthemae / NFCCI1886 / HM448998
Gibbago trianthemae / GT-VM / KJ825852
IT 1060
IT EW / MFLUCC
IT Kasun New / MFLUCC
Johnalcornia aberrans / BRIP 16281 / KJ415475 / KJ415522
Leptosphaeria maculans / DAOM 229267 / DQ470993 / DQ470946 / DQ470894
Leptosphaerulina australis / CBS 317.83 / EU754067 / EU754166 / GU371790
Neocamarosporium goegapense / CPC 23676 / KJ869220 / KJ869163
Neocamarosporium sp. / Phoma betae / CBS 109410 / EU754079 / EU754178 / GU371774
Neocamarosporium sp. / Pleospora betae / IMI 156653 / U43466 / U43483
Neocamarosporium sp. / Pleospora bjoerlingii / ICMP10945 / AY849954
Neocamarosporium sp. / Pleospora chenopodii / CBS 344.78 / EU754033 / EU754132
Neocamarosporium sp. / Pleospora calvescens / CBS 246.79 / EU754032 / EU754131 / KC584500
Neocamarosporium sp. / Pleospora halimiones / CBS 432.77 / JF740096 / JF740267 / KC584503
Ophiosphaerella herpotricha / CBS 620.86 / DQ678010 / DQ678062 / KF498728 / DQ767645
Paraphoma radicina / CBS 111.79 / EU754092 / EU754191 / FJ427058 / KF252180
Phaeosphaeria oryzae / CBS 110110 / GQ387530 / KF251689 / KF252193
Phoma exigua / CBS 431.74 / EU754084 / EU754183 / FJ427001 / GU357813
Pleospora fallens / CBS 284.70 / GU238215 / GU238074 / KC584502
Pleospora herbarum / MFLUCC 14-0261 / KJ790252 / KJ790251
Pleospora herbarum / BLE29 / FN868852 / FN868457
Pleospora herbarum / Pleospora tomatonis / CBS109844 / AY849959
Pleospora herbarum / Pleospora sedicola / CBS109843 / AY849958
Pleospora herbarum / CBS 191.86 / GU238232 / GU238160 / NR111243 / DQ247794 / KC584731 / AF443884
Pleospora herbarum / Pleospora papaveracea / CBS432.50 / AY152615
Pleospora herbarum / Pleospora tarda / CBS 714.68 / KC584603 / KC584345 / KC584238 / JQ646450 / AY324671 / AY316968
Pleospora herbarum / Pleospora halophila / CBS410.73 / AY849955
Pleospora herbarum MFLUCC (IT 956) / KP334729 / KP334709 / KP334719 / KP334737
Pleospora herbarum MFLUCC (IT 958) / KP334730 / KP334710 / KP334720 / KP334738
Pleospora herbarum var. herbarum / DAOM195299 / AY152614
Porocercospora seminalis / CPC 21349 / HF934861 / HF934945 / HF934845
Porocercospora seminalis / CPC 21332 / HF934862 / HF934941 / HF934843
Pyrenochaeta nobilis / CBS 407.76 / EU754107 / EU754206 / NR_103598 / DQ677991
Pyrenophora chaetomioides / DAOM 208989 / JN940091 / JN943662
Pyrenophora dictyoides / DAOM 75616 / JN940962 / JN940079 / JN943654 / JN993617
Pyrenophora phaeocomes / DAOM 222769 / JN940960 / JN940093 / JN943649 / DQ497614
Setosphaeria monoceras / CBS 154.26 / AY016352 / AY016368
Stemphylium herbarum / Stemphylium herbarum / CBS 191.86 / GU238232 / GU238160 / KC584239 / KC584471 / KC584731 / AF443884
Xenobotryosphaeria calamagrostidis / CBS 303.71 / KF251782 / KF251279 / KF252284