Table 2.1 Isolates and Genbank Accessions for the Gene Sequences in This Study.Bold Accession

Table 2.1 Isolates and Genbank Accessions for the Gene Sequences in This Study.Bold Accession

Table 2.1 Isolates and GenBank accessions for the gene sequences in this study.Bold accession numbers were generated in other studies

New species name / Former species name / Culture number / GenBank accessions
SSU / LSU / ITS / RPB2 / TEF / GAPDH
Alternaria
limoniasperae / Alternaria
limoniasperae / CBS 102595 / KC584540 / KC584284 / FJ266476 / KC584408 / AY562411 / KC584666
Alternaria
alternantherae / Alternaria
alternantherae / CBS 124392 / KC584506 / KC584251 / KC584179 / KC584374 / KC584633 / KC584096
Alternaria
perpunctulata / Alternaria
perpunctulata / CBS 115267 / KC584550 / KC584294 / KC584210 / KC584418 / KC584676 / KC584129
Alternaria
pseudorostrata / Alternaria
pseudorostrata / CBS 119411 / KC584554 / KC584298 / JN383483 / KC584422 / KC584680 / AY562406
Alternaria
triglochinicola / Alternaria
triglochinicola / CBS 119676 / KC584569 / KC584313 / KC584222 / KC584437 / KC584695 / KC584145
Alternaria
chlamydosporigena / Embellisia
chlamydospora / CBS 341.71 / KC584584 / KC584326 / KC584231 / KC584451 / KC584710 / KC584156
Alternaria
chlamydospora / Alternaria
chlamydospora / CBS 491.72 / KC584520 / KC584264 / KC584189 / KC584388 / KC584647 / KC584108
Alternaria abundans / Embellisia abundans / CBS 534.83 / KC584581 / KC584323 / JN383485 / KC584448 / KC584707 / KC584154
Alternaria alternata / Alternaria alternata / CBS 916.96 / KC584507 / DQ678082 / AF347031 / KC584375 / KC584634 / AY278808
Alternaria alternata / Alternaria alternata / MFLUCC 14-1184 / KP334721 / KP334701 / KP334711 / KP334731 / KP334733 / KP334735
Alternaria alternata / Alternaria alternata / MFLUCC14-1185 / KP334722 / KP334702 / KP334712 / KP334732 / KP334734 / KP334736
Alternaria alternata / Alternaria alternata / MFLUCC (IT 466) / KP334723 / KP334703 / KP334713
Alternaria anigozanthi / Alternaria anigozanthi / CBS 121920 / KC584508 / KC584252 / KC584180 / KC584376 / KC584635 / KC584097
Alternaria arborescens / Alternaria arborescens / CBS 102605 / KC584509 / KC584253 / AF347033 / KC584377 / KC584636 / AY278810
Alternaria arbusti / EGS 91-136 / JQ693644
Alternaria armoraciae / Alternaria armoraciae / CBS 118702 / KC584511 / KC584255 / KC584182 / KC584379 / KC584638 / KC584099
Alternaria aspera / Ulocladium
arborescens / CBS 115269 / KC584607 / KC584349 / KC584242 / KC584474 / KC584734 / KC584166
Alternaria bornmuelleri / Undifilum bornmuelleri / DAOM 231361 / KC584624 / KC584366 / FJ357317 / KC584491 / KC584751 / FJ357305
Alternaria botryospora / Embellisia novaezelandiae / CBS 478.90 / KC584594 / KC584336 / AY278844 / KC584461 / KC584720 / AY278831
Alternaria botrytis / Ulocladium botrytis / CBS 197.67 / KC584609 / KC584351 / KC584476 / KC584243 / KC584168 / KC584736
Alternaria brassicicola / Alternaria brassicicola / CBS 118699 / KC584515 / KC584259 / JX499031 / KC584383 / KC584642 / KC584103
Alternaria breviramosa / Chalastospora
ellipsoidea / CBS 121331 / KC584574 / KC584318 / FJ839608 / KC584442 / KC584700 / KC584148
Alternaria caespitosa Infectoriae / Ybotryomyces
caespitosus / CBS 177.80 / KC584625 / KC584367 / KC584250 / KC584492 / KC584752 / KC584178
Alternaria californica / EGS 52-082 / JQ693645 / JQ672433
Alternaria capsici-annui / Alternaria capsici-annui / CBS 504.74 / KC584517 / KC584261 / KC584187 / KC584385 / KC584644 / KC584105
Alternaria caricis / Nimbya caricis / CBS 480.90 / KC584600 / KC584342 / AY278839 / KC584467 / KC584726 / AY278826
Alternaria carotiincultae / Alternaria carotiincultae / CBS 109381 / KC584518 / KC584262 / KC584188 / KC584386 / KC584645 / KC584106
Alternaria cetera Chalastospora / Chalastospora cetera / CBS 121340 / KC584573 / KC584317 / JN383482 / KC584441 / KC584699 / AY562398
Alternaria cheiranthi / Alternaria cheiranthi / CBS 109384 / KC584519 / KC584263 / AF229457 / KC584387 / KC584646 / KC584107
Alternaria cinerariae / Alternaria cinerariae / CBS 116495 / KC584521 / KC584265 / KC584190 / KC584389 / KC584648 / KC584109
Alternaria conjuncta / Alternaria conjuncta / CBS 196.86 / KC584522 / KC584266 / FJ266475 / KC584390 / KC584649 / AY562401
Alternaria cucurbitae / Ulocladium cucurbitae / CBS 483.81 / KC584616 / KC584358 / FJ266483 / KC584483 / KC584743 / AY562418
Alternaria dauci / Alternaria dauci / CBS 117097 / KC584524 / KC584268 / KC584192 / KC584392 / KC584651 / KC584111
Alternaria daucicaulis / EGS 36-1947 / JQ693653 / JQ672435
Alternaria daucifolii / Alternaria daucifolii / CBS 118812 / KC584525 / KC584269 / KC584193 / KC584393 / KC584652 / KC584112
Alternaria dianthicola / Alternaria dianthicola / CBS 116491 / KC584526 / KC584270 / KC584194 / KC584394 / KC584653 / KC584113
Alternaria dianthicola / CBS 915.96 / JQ693640 / JQ672429
Alternaria embellisia / Embellisia allii / CBS 339.71 / KC584582 / KC584324 / KC584230 / KC584449 / KC584708 / KC584155
Alternaria ethzedia / Alternaria ethzedia / CBS 197.86 / KC584530 / KC584274 / AF392987 / KC584398 / KC584657 / AY278795
Alternaria eureka / Embellisia eureka / CBS 193.86 / KC584589 / KC584331 / JN383490 / KC584456 / KC584715 / JN383471
Alternaria frumenti / EGS 44-001 / JQ693654 / JQ672416
Alternaria gaisen / Alternaria gaisen / CBS 632.93 / KC584531 / KC584275 / KC584197 / KC584399 / KC584658 / KC584116
Alternaria gypsophilae / Alternaria gypsophilae / CBS 107.41 / KC584533 / KC584277 / KC584199 / KC584401 / KC584660 / KC584118
Alternaria hordeiaustralica / EGS 44-200 / JQ693641 / JQ672432
Alternaria hordeicola / EGS 50-184 / JQ693642 / JQ672425
Alternaria humuli / EGS 47 140 / JQ693652 / JQ672434 / JQ646293
Alternaria hyacinthi / Embellisia hyacinthi / CBS 416.71 / KC584590 / KC584332 / KC584233 / KC584457 / KC584716 / KC584158
Alternaria incomplexa / EGS 17-103 / JQ672422 / JQ693658
Alternaria infectoria / Alternaria infectoria / CBS 210.86 / KC584536 / KC584280 / DQ323697 / KC584404 / KC584662 / AY278793
Alternaria intercepta / EGS 49-137 / JQ693656 / JQ672431
Alternaria japonica / Alternaria japonica / CBS 118390 / KC584537 / KC584281 / KC584201 / KC584405 / KC584663 / KC584121
Alternaria juxtiseptata / Alternaria juxtiseptata / CBS 119673 / KC584538 / KC584282 / KC584202 / KC584406 / KC584664 / KC584122
Alternaria leptinellae / Embellisia leptinellae / CBS 477.90 / KC584592 / KC584334 / KC584235 / KC584459 / KC584718 / KC584160
Alternaria leucanthemi / Teretispora
leucanthemi / CBS 422.65 / KC584606 / KC584348 / KC584241 / KC584473 / KC584733 / KC584165
Alternaria leucanthemi / Teretispora
leucanthemi / CBS 421.65 / KC584605 / KC584347 / KC584240 / KC584472 / KC584732 / KC584164
Alternaria limaciformis / Alternaria limaciformis / CBS 481.81 / KC584539 / KC584283 / KC584203 / KC584407 / KC584665 / KC584123
Alternaria longipes / Alternaria longipes / CBS 540.94 / KC584541 / KC584285 / AY278835 / KC584409 / KC584667 / AY278811
Alternaria macrospora / Alternaria macrospora / CBS 117228 / KC584542 / KC584286 / KC584204 / KC584410 / KC584668 / KC584124
Alternaria merytae / EGS 46 153 / JQ693651 / JQ672421 / JQ646292
Alternaria metachromatica / EGS 38-132 / KF496083 / JQ646498 / FJ214931 / AY762956
Alternaria molesta / Alternaria molesta / CBS 548.81 / KC584544 / KC584288 / KC584205 / KC584412 / KC584670 / KC584125
Alternaria mouchaccae / Alternaria mouchaccae / CBS 119671 / KC584545 / KC584289 / KC584206 / KC584413 / KC584671 / AY562399
Alternaria murispora / KP334724 / KP334704 / KP334714
Alternaria nepalensis / Alternaria nepalensis / CBS 118700 / KC584546 / KC584290 / KC584207 / KC584414 / KC584672 / KC584126
Alternaria nobilis / Alternaria nobilis / CBS 116490 / KC584547 / KC584291 / KC584208 / KC584415 / KC584673 / KC584127
Alternaria novae zelandiae / EGS 48 092 / JQ693655 / JQ672418 / JQ646296
Alternaria obovoidea / Ulocladium
obovoideum / CBS 101229 / KC584618 / KC584360 / FJ266487 / KC584485 / KC584745 / FJ266498
Alternaria oregonensis / Alternaria oregonensis / CBS 542.94 / KC584548 / KC584292 / FJ266478 / KC584416 / KC584674 / FJ266491
Alternaria oudemansii / Ulocladium oudemansii / CBS 114.07 / KC584619 / KC584361 / FJ266488 / KC584486 / KC584746 / KC584175
Alternaria panax / Alternaria panax / CBS 482.81 / KC584549 / KC584293 / KC584209 / KC584417 / KC584675 / KC584128
Alternaria papavericola / Brachycladium papaveris / CBS 116606 / KC584579 / KC584321 / FJ357310 / KC584446 / KC584705 / FJ357298
Alternaria peglionii / CBS 103.26 / JQ693646
Alternaria penicillata / Crivellia papaveracea / CBS 116607 / KC584580 / KC584322 / KC584229 / KC584447 / KC584706 / KC584153
Alternaria photistica / EGS 35-172 / JQ693659 / JQ672417
Alternaria photistica / Alternaria photistica / CBS 212.86 / KC584552 / KC584296 / KC584212 / KC584420 / KC584678 / KC584131
Alternaria planifunda / Embellisia planifunda / CBS 537.83 / KC584596 / KC584338 / FJ357315 / KC584463 / KC584722 / FJ357303
Alternaria porri / Alternaria porri / CBS 116698 / KC584553 / KC584297 / DQ323700 / KC584421 / KC584679 / KC584132
Alternaria poteae / Embellisia proteae / CBS 475.90 / KC584597 / KC584339 / AY278842 / KC584464 / KC584723 / KC584161
Alternaria radicina / Alternaria radicina / CBS 245.67 / KC584555 / KC584299 / KC584213 / KC584423 / KC584681 / KC584133
Alternaria rosae / EGS 41-130 / JQ693639 / JQ672414
Alternaria saponariae / Alternaria saponariae / CBS 116492 / KC584557 / KC584301 / KC584215 / KC584425 / KC584683 / KC584135
Alternaria scirpicola / Nimbya scirpicola / CBS 481.90 / KC584602 / KC584344 / KC584237 / KC584469 / KC584728 / KC584163
Alternaria septospora / Ulocladium
septosporum / CBS 109.38 / KC584620 / KC584362 / FJ266489 / KC584487 / KC584747 / FJ266500
Alternaria simsimi / Alternaria simsimi / CBS 115265 / KC584560 / KC584304 / JF780937 / KC584428 / KC584686 / KC584137
Alternaria slovaca / Chmelia slovaca / CBS 567.66 / KC584576 / KC584319 / KC584226 / KC584444 / KC584702 / KC584150
Alternaria solani / Alternaria solani / CBS 116651 / KC584562 / KC584306 / KC584217 / KC584430 / KC584688 / KC584139
Alternaria sonchi / Alternaria sonchi / CBS 119675 / KC584565 / KC584309 / KC584220 / KC584433 / KC584691 / KC584142
Alternaria sp. / Clathrospora
heterospora / CBS 175.52 / KC584577 / KC584320 / KC584227 / KC584445 / KC584703 / KC584151
Alternaria sp. / Comoclathris magna / CBS 174.52 / KC584578 / DQ678068 / KC584228 / DQ677964 / KC584704 / KC584152
Alternaria sp. / Nimbya gomphrenae / CBS 108.27 / KC584601 / KC584343 / KC584236 / KC584468 / KC584727 / KC584162
Alternaria sp. / “Alternaria resedae” / CBS 115.44 / KC584556 / KC584300 / KC584214 / KC584424 / KC584682 / KC584134
Alternaria sp. / EGS 10-193 / JQ693648
Alternaria tagetica / Alternaria tagetica / CBS 479.81 / KC584566 / KC584310 / KC584221 / KC584434 / KC584692 / KC584143
Alternaria tellustris / Embellisia tellustris / CBS 538.83 / KC584598 / KC584340 / FJ357316 / KC584465 / KC584724 / AY562419
Alternaria tenuissima / Alternaria tenuissima / CBS 918.96 / KC584567 / KC584311 / AF347032 / KC584435 / KC584693 / AY278809
Alternaria terricola / Ulocladium
tuberculatum / CBS 202.67 / KC584623 / KC584365 / FJ266490 / KC584490 / KC584750 / KC584177
Alternaria triticimaculans / EGS 41-050 / JQ693657 / JQ672430
Alternaria triticina / EGS 17-061 / AY762948 / AY762958
Alternaria vaccariicola / Alternaria vaccariicola / CBS 118714 / KC584571 / KC584315 / KC584224 / KC584439 / KC584697 / KC584147
Alternaria ventricosa / EGS 52-075 / JQ693649 / JQ672426
Alternaria viburni / EGS 49-147 / JQ693647 / JQ672420
Alternariaster helianthi / CBS 134020 / KC609346 / KC609340 / KC609352
Alternariaster helianthi / CBS 327.69 / KC584627 / KC584369 / KC609335 / KC584494
Bipolaris cynodontis / Cochliobolus cynodontis / ICMP 6128 / JX256380 / JX256412 / JX276427
Bipolaris heterostrophus / Cochliobolus heterostrophus / CBS 134.39 / AY544727 / AY544645 / DQ247790
Bipolaris melinidis / Cochliobolus melinidis / BRIP 12898 / JN600994 / JX256411 / JN192382 / JN600972
Bipolaris miyabeanus / Cochliobolus miyabeanus / MFLUCC 10 0694 / JX256381 / JX256413 / JX266582 / JX276428
Camarosporium aloes / CPC 21572 / KF777198 / KF777142
Camarosporium quaternatum / CBS 483.95 / GU296141 / GU301806 / GU357761
Chalastospora gossypii / CPC 15567 / FJ839650 / FJ839615
Chalastospora obclavata / CBS 124120 / FJ839651 / FJ839616
Clathrospora elynae / CBS 196.54 / KC584629 / KC584371 / KC584496
Clathrospora elynae / CBS 161.51 / KC584628 / KC584370 / KC584495
Comoclathris compressa / CBS 156.53 / KC584630 / KC584372 / KC584497
Comoclathris compressa / CBS 157.53 / KC584631 / KC584373 / KC584498
Comoclathris sedi / MFLUCC 13 0754 / KP334725 / KP334705 / KP334715
Comoclathris sedi / Pleospora ambigua / CBS 366.52 / AY787937
Comoclathris sedi / MFLUCC 13 0817 / KP334727 / KP334706 / KP334716
Comoclathris sedi / MFLUCC 13 0763 / KP334728 / KP334707 / KP334717
Comoclathris sedi / MFLUCC 13 0607 / KP334726 / KP334708 / KP334718
Comoclathris sp. / Pleospora incompta / CBS 467.76 / GU238220 / GU238087 / KC584504
Comoclathris sp. / Pleospora typhicola / CBS 132.69 / JF740105 / JF740325 / KC584505
Comoclathris spartii / MFLUCC 13 0214 / KM577161 / KM577160 / KM577159
Coniothyrium palmarum / CBS 400.71 / EU754054 / EU754153 / AY720708
Coniothyrium palmarum / CBS 758.73 / EU754055 / EU754154
Cucurbitaria berberidis / CBS 394.84 / GQ387544 / GQ387605
Cucurbitaria berberidis / CBS 363.93 / GQ387545 / GQ387606
Curvularia heteropogonis / CBS 284.91 / JN600990 / JN192379
Curvularia lunata / CBS 730.96 / JX256396 / JX256429
Curvularia ravenelii / BRIP 13165 / JN601001 / JN192386
Decorospora gaudefroyi / pp4723 / AF394542 / EF177849 / AF394541
Decorospora sp / Pleospora sp. / ATCC MYA-3202 / FJ914896 / FJ914869
Decorospora sp. / Pleospora sp. / ATCC MYA-3203 / FJ914897 / FJ914870
Dendryphiella salina / CBS:142.60 / KC793337 / KC793339 / KC793340
Dothidotthia aspera / CPC 12933 / EU673228 / EU673276
Dothidotthia symphoricarpi / CPC 12929 / EU673224 / EU673273
Drechslera dematioidea / CBS 108963 / JN712532 / JN712466
Drechslera dematioidea / CBS 108963 / JN712532 / JN712466 / JN712590 / AY004820
Drechslera dictyoides / DAOM 63666 / JN940080 / JN943653 / AY004836
Drechslera dictyoides / DAOM 63666 / JN940080 / JN943653 / AY004836
Edenia gomezpompae / CBS 124106 / FJ839654 / FJ839619
Edenia gomezpompae / C1c / EF565744
Edenia gomezpompae / JLCC34533 / KC193601
Edenia gomezpompae / 11G048 / KJ957792
Embellisia annulata / CBS 302.84 / KC584583 / KC584325 / JN383486 / KC584450 / JN383467
Exserohilum sp. / C950801 / AB245146 / AB245145
Exserohilum sp. / NK93 / AB245148 / AB245147
Gibbago trianthemae / NFCCI1886 / HM448998
Gibbago trianthemae / GT-VM / KJ825852
IT 1060
IT EW / MFLUCC
IT Kasun New / MFLUCC
Johnalcornia aberrans / BRIP 16281 / KJ415475 / KJ415522
Leptosphaeria maculans / DAOM 229267 / DQ470993 / DQ470946 / DQ470894
Leptosphaerulina australis / CBS 317.83 / EU754067 / EU754166 / GU371790
Neocamarosporium goegapense / CPC 23676 / KJ869220 / KJ869163
Neocamarosporium sp. / Phoma betae / CBS 109410 / EU754079 / EU754178 / GU371774
Neocamarosporium sp. / Pleospora betae / IMI 156653 / U43466 / U43483
Neocamarosporium sp. / Pleospora bjoerlingii / ICMP10945 / AY849954
Neocamarosporium sp. / Pleospora chenopodii / CBS 344.78 / EU754033 / EU754132
Neocamarosporium sp. / Pleospora calvescens / CBS 246.79 / EU754032 / EU754131 / KC584500
Neocamarosporium sp. / Pleospora halimiones / CBS 432.77 / JF740096 / JF740267 / KC584503
Ophiosphaerella herpotricha / CBS 620.86 / DQ678010 / DQ678062 / KF498728 / DQ767645
Paraphoma radicina / CBS 111.79 / EU754092 / EU754191 / FJ427058 / KF252180
Phaeosphaeria oryzae / CBS 110110 / GQ387530 / KF251689 / KF252193
Phoma exigua / CBS 431.74 / EU754084 / EU754183 / FJ427001 / GU357813
Pleospora fallens / CBS 284.70 / GU238215 / GU238074 / KC584502
Pleospora herbarum / MFLUCC 14-0261 / KJ790252 / KJ790251
Pleospora herbarum / BLE29 / FN868852 / FN868457
Pleospora herbarum / Pleospora tomatonis / CBS109844 / AY849959
Pleospora herbarum / Pleospora sedicola / CBS109843 / AY849958
Pleospora herbarum / CBS 191.86 / GU238232 / GU238160 / NR111243 / DQ247794 / KC584731 / AF443884
Pleospora herbarum / Pleospora papaveracea / CBS432.50 / AY152615
Pleospora herbarum / Pleospora tarda / CBS 714.68 / KC584603 / KC584345 / KC584238 / JQ646450 / AY324671 / AY316968
Pleospora herbarum / Pleospora halophila / CBS410.73 / AY849955
Pleospora herbarum MFLUCC (IT 956) / KP334729 / KP334709 / KP334719 / KP334737
Pleospora herbarum MFLUCC (IT 958) / KP334730 / KP334710 / KP334720 / KP334738
Pleospora herbarum var. herbarum / DAOM195299 / AY152614
Porocercospora seminalis / CPC 21349 / HF934861 / HF934945 / HF934845
Porocercospora seminalis / CPC 21332 / HF934862 / HF934941 / HF934843
Pyrenochaeta nobilis / CBS 407.76 / EU754107 / EU754206 / NR_103598 / DQ677991
Pyrenophora chaetomioides / DAOM 208989 / JN940091 / JN943662
Pyrenophora dictyoides / DAOM 75616 / JN940962 / JN940079 / JN943654 / JN993617
Pyrenophora phaeocomes / DAOM 222769 / JN940960 / JN940093 / JN943649 / DQ497614
Setosphaeria monoceras / CBS 154.26 / AY016352 / AY016368
Stemphylium herbarum / Stemphylium herbarum / CBS 191.86 / GU238232 / GU238160 / KC584239 / KC584471 / KC584731 / AF443884
Xenobotryosphaeria calamagrostidis / CBS 303.71 / KF251782 / KF251279 / KF252284
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